RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PRR34Q9NV39 138 aa8.77□□□□□ -1
CSPG4P11-201ENST00000560634 ANKRD17O75179 2603 aaKnown RBP8.77□□□□□ -1.01
CSPG4P11-201ENST00000560634 FAM168BA1KXE4 195 aa8.76□□□□□ -1.01
CSPG4P11-201ENST00000560634 CSNK1G2-AS1Q8NCQ2 148 aa8.75□□□□□ -1.01
CSPG4P11-201ENST00000560634 COL4A2P08572 1712 aa8.75□□□□□ -1.01
CSPG4P11-201ENST00000560634 CRIPTQ9P021 101 aa8.75□□□□□ -1.01
CSPG4P11-201ENST00000560634 MIR22HGQ0VDD5 57 aa8.75□□□□□ -1.01
CSPG4P11-201ENST00000560634 LINC00336Q6ZUF6 198 aa8.74□□□□□ -1.01
CSPG4P11-201ENST00000560634 A0A1B0GVX0 72 aa8.74□□□□□ -1.01
CSPG4P11-201ENST00000560634 H7BZZ5 65 aa8.74□□□□□ -1.01
CSPG4P11-201ENST00000560634 EIF4EBP3O60516 100 aaPredicted RBP8.73□□□□□ -1.01
CSPG4P11-201ENST00000560634 Q8N377 158 aa8.73□□□□□ -1.01
CSPG4P11-201ENST00000560634 KTN1-AS1Q86SY8 53 aa8.72□□□□□ -1.01
CSPG4P11-201ENST00000560634 PLA2G2DQ9UNK4 145 aa8.71□□□□□ -1.01
CSPG4P11-201ENST00000560634 LCA10Q71F78 164 aa8.71□□□□□ -1.01
CSPG4P11-201ENST00000560634 WWC2-AS2Q96NR7 200 aa8.71□□□□□ -1.01
CSPG4P11-201ENST00000560634 ZNF861PO60384 105 aa8.71□□□□□ -1.02
CSPG4P11-201ENST00000560634 TLX1NBP0CAT3 122 aa8.7□□□□□ -1.02
CSPG4P11-201ENST00000560634 COL27A1Q8IZC6 1860 aaPredicted RBP8.69□□□□□ -1.02
CSPG4P11-201ENST00000560634 C15orf56Q8N910 161 aa8.69□□□□□ -1.02
CSPG4P11-201ENST00000560634 USP24Q9UPU5 2620 aa8.68□□□□□ -1.02
CSPG4P11-201ENST00000560634 DSCR10P59022 87 aa8.68□□□□□ -1.02
CSPG4P11-201ENST00000560634 LINC00612Q8N6U2 182 aa8.66□□□□□ -1.02
CSPG4P11-201ENST00000560634 SPANXA2-OT1Q8N9U9 137 aa8.66□□□□□ -1.02
CSPG4P11-201ENST00000560634 LINC00304Q8N9R0 145 aa8.66□□□□□ -1.02
CSPG4P11-201ENST00000560634 HTTP42858 3142 aa8.66□□□□□ -1.02
CSPG4P11-201ENST00000560634 C9orf129Q5T035 196 aaKnown RBP8.65□□□□□ -1.02
CSPG4P11-201ENST00000560634 C9orf163Q8N9P6 203 aa8.65□□□□□ -1.02
CSPG4P11-201ENST00000560634 APLNQ9ULZ1 77 aa8.65□□□□□ -1.02
CSPG4P11-201ENST00000560634 BRCA2P51587 3418 aa8.64□□□□□ -1.03
CSPG4P11-201ENST00000560634 C19orf73Q9NVV2 129 aa8.63□□□□□ -1.03
CSPG4P11-201ENST00000560634 MGAM2Q2M2H8 2515 aa8.62□□□□□ -1.03
CSPG4P11-201ENST00000560634 OBSCN-AS1Q96MR7 158 aa8.62□□□□□ -1.03
CSPG4P11-201ENST00000560634 COX6B2Q6YFQ2 88 aa8.6□□□□□ -1.03
CSPG4P11-201ENST00000560634 GIG44P09565 113 aaPredicted RBP8.6□□□□□ -1.03
CSPG4P11-201ENST00000560634 A0A1W2PNM2 257 aa8.59□□□□□ -1.03
CSPG4P11-201ENST00000560634 CDC42SE1Q9NRR8 79 aa8.59□□□□□ -1.03
CSPG4P11-201ENST00000560634 J3QL48 77 aa8.58□□□□□ -1.04
CSPG4P11-201ENST00000560634 A0A087WTM6 91 aa8.58□□□□□ -1.04
CSPG4P11-201ENST00000560634 FAM104AQ969W3 186 aa8.57□□□□□ -1.04
CSPG4P11-201ENST00000560634 K7EIL1 84 aa8.57□□□□□ -1.04
CSPG4P11-201ENST00000560634 WIPF1O43516 503 aa8.56□□□□□ -1.04
CSPG4P11-201ENST00000560634 PRRC2CQ9Y520 2896 aaKnown RBP8.56□□□□□ -1.04
CSPG4P11-201ENST00000560634 C5orf42Q9H799 3197 aa8.56□□□□□ -1.04
CSPG4P11-201ENST00000560634 IGLV5-48A0A075B6I7 105 aa8.56□□□□□ -1.04
CSPG4P11-201ENST00000560634 SPRR4Q96PI1 79 aa8.56□□□□□ -1.04
CSPG4P11-201ENST00000560634 IGLV7-43P04211 117 aa8.55□□□□□ -1.04
CSPG4P11-201ENST00000560634 CNBPP62633 177 aaKnown RBP8.54□□□□□ -1.04
CSPG4P11-201ENST00000560634 A0A0G2JQZ4 141 aa8.54□□□□□ -1.04
CSPG4P11-201ENST00000560634 A0A1W2PNN7 141 aa8.54□□□□□ -1.04
CSPG4P11-201ENST00000560634 KRTAP10-11P60412 298 aa8.53□□□□□ -1.04
CSPG4P11-201ENST00000560634 IGLV5-37A0A075B6J1 123 aa8.52□□□□□ -1.05
CSPG4P11-201ENST00000560634 RBM12B-AS1Q9P1G2 102 aa8.51□□□□□ -1.05
CSPG4P11-201ENST00000560634 C9orf92A6NGG3 77 aa8.51□□□□□ -1.05
CSPG4P11-201ENST00000560634 Q1T7F1 81 aa8.51□□□□□ -1.05
CSPG4P11-201ENST00000560634 PSORS1C2Q9UIG4 136 aa8.51□□□□□ -1.05
CSPG4P11-201ENST00000560634 A0A096LNT2 108 aa8.5□□□□□ -1.05
CSPG4P11-201ENST00000560634 MKI67P46013 3256 aaKnown RBP8.5□□□□□ -1.05
CSPG4P11-201ENST00000560634 ZNF575Q86XF7 245 aa8.48□□□□□ -1.05
CSPG4P11-201ENST00000560634 HECTD1Q9ULT8 2610 aa8.48□□□□□ -1.05
CSPG4P11-201ENST00000560634 ANAPC11Q9NYG5 84 aa8.47□□□□□ -1.05
CSPG4P11-201ENST00000560634 OCR1Q9BZK8 76 aa8.47□□□□□ -1.05
CSPG4P11-201ENST00000560634 CHD7Q9P2D1 2997 aa8.47□□□□□ -1.05
CSPG4P11-201ENST00000560634 ATRQ13535 2644 aa8.46□□□□□ -1.05
CSPG4P11-201ENST00000560634 PCSK5Q92824 1860 aa8.45□□□□□ -1.06
CSPG4P11-201ENST00000560634 MAST4O15021 2626 aa8.44□□□□□ -1.06
CSPG4P11-201ENST00000560634 LAMA2P24043 3122 aaKnown RBP8.43□□□□□ -1.06
CSPG4P11-201ENST00000560634 Q8N1X5 172 aa8.42□□□□□ -1.06
CSPG4P11-201ENST00000560634 LUZP6Q538Z0 58 aa8.42□□□□□ -1.06
CSPG4P11-201ENST00000560634 PRR26Q8N8Z3 221 aa8.42□□□□□ -1.06
CSPG4P11-201ENST00000560634 A0A0D9SG42 100 aa8.41□□□□□ -1.06
CSPG4P11-201ENST00000560634 KRTAP10-3P60369 221 aa8.41□□□□□ -1.06
CSPG4P11-201ENST00000560634 CASC10Q5T4H9 136 aa8.41□□□□□ -1.06
CSPG4P11-201ENST00000560634 IGLV7-46A0A075B6I9 117 aa8.4□□□□□ -1.07
CSPG4P11-201ENST00000560634 SMR3BP02814 79 aaPredicted RBP8.39□□□□□ -1.07
CSPG4P11-201ENST00000560634 LINC01554Q52M75 96 aa8.39□□□□□ -1.07
CSPG4P11-201ENST00000560634 Q75L30 129 aa8.37□□□□□ -1.07
CSPG4P11-201ENST00000560634 CHD9Q3L8U1 2897 aa8.37□□□□□ -1.07
CSPG4P11-201ENST00000560634 LAMA3Q16787 3333 aa8.35□□□□□ -1.07
CSPG4P11-201ENST00000560634 CR1P17927 2039 aa8.35□□□□□ -1.07
CSPG4P11-201ENST00000560634 RANBP2P49792 3224 aaKnown RBP8.33□□□□□ -1.08
CSPG4P11-201ENST00000560634 A0A1B0GU33 70 aa8.33□□□□□ -1.08
CSPG4P11-201ENST00000560634 HRES1P13985 223 aa8.3□□□□□ -1.08
CSPG4P11-201ENST00000560634 LINC01558Q9Y6Z2 57 aa8.3□□□□□ -1.08
CSPG4P11-201ENST00000560634 STAB1Q9NY15 2570 aa8.28□□□□□ -1.08
CSPG4P11-201ENST00000560634 FLG2Q5D862 2391 aaPredicted RBP8.28□□□□□ -1.08
CSPG4P11-201ENST00000560634 CFAP54Q96N23 3096 aa8.28□□□□□ -1.08
CSPG4P11-201ENST00000560634 HELZ2Q9BYK8 2649 aaKnown RBP8.28□□□□□ -1.08
CSPG4P11-201ENST00000560634 FAM229BQ4G0N7 80 aa8.28□□□□□ -1.08
CSPG4P11-201ENST00000560634 SETXQ7Z333 2677 aaKnown RBP8.27□□□□□ -1.09
CSPG4P11-201ENST00000560634 Q6ZSA8 131 aa8.27□□□□□ -1.09
CSPG4P11-201ENST00000560634 Q8N9P0 234 aaPredicted RBP8.26□□□□□ -1.09
CSPG4P11-201ENST00000560634 Q5XG85 94 aa8.26□□□□□ -1.09
CSPG4P11-201ENST00000560634 CDH23Q9H251 3354 aa8.25□□□□□ -1.09
CSPG4P11-201ENST00000560634 CAMK2N1Q7Z7J9 78 aa8.25□□□□□ -1.09
CSPG4P11-201ENST00000560634 UNC80Q8N2C7 3258 aa8.25□□□□□ -1.09
CSPG4P11-201ENST00000560634 MMP24-AS1A0A0U1RRL7 71 aa8.23□□□□□ -1.09
CSPG4P11-201ENST00000560634 TRANK1O15050 2925 aa8.23□□□□□ -1.09
CSPG4P11-201ENST00000560634 KRTAP1-3Q8IUG1 177 aa8.23□□□□□ -1.09
CSPG4P11-201ENST00000560634 LINC00483Q53H64 154 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms