RNA–Protein interactions for RNA: ENST00000557249.1

PTPN21-209, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 2

Gene PTPN21, Length 576 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-209	ENST00000557249	PRRC2B	Q5JSZ5	2229 aa	Known RBP	0.96	□□□□□ -2.26
PTPN21-209	ENST00000557249	SDK1	Q7Z5N4	2213 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249		A0A096LNT2	108 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	GVQW2	A0A096LPI5	108 aa	Predicted RBP	0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249		G3V318	75 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	KRTAP12-4	P60329	112 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	SPATA8	Q6RVD6	105 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249		Q6ZRX8	168 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	SMIM11B	Q8TCY0	68 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	PLAC4	Q8WY50	150 aa		0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249	RPL39L	Q96EH5	51 aa	Known RBP	0.95	□□□□□ -2.26
PTPN21-209	ENST00000557249		H0YGX0	51 aa		0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	NDUFB1	O75438	58 aa		0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	RPL39	P62891	51 aa	Known RBP	0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	LEAP2	Q969E1	77 aa		0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	CNFN	Q9BYD5	112 aa		0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	TECTA	O75443	2155 aa		0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	0.94	□□□□□ -2.26
PTPN21-209	ENST00000557249	MED13L	Q71F56	2210 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	ETDC	A0A1B0GVM5	59 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	NDUFA1	O15239	70 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	CD52	P31358	61 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	RPL37	P61927	97 aa	Known RBP	0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	SPINK13	Q1W4C9	94 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	KRTAP13-1	Q8IUC0	172 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	KCNQ1DN	Q9H478	68 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	CACNA1B	Q00975	2339 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	FBN3	Q75N90	2809 aa		0.93	□□□□□ -2.26
PTPN21-209	ENST00000557249	SORL1	Q92673	2214 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	STATH	P02808	62 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	COX7B	P24311	80 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	DEFB114	Q30KQ6	69 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	DEFB104A	Q8WTQ1	72 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	COX14	Q96I36	57 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	PRO3102	Q9H379	93 aa		0.92	□□□□□ -2.26
PTPN21-209	ENST00000557249	PTPRQ	Q9UMZ3	2332 aa		0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249		A0A1B0GU69	56 aa		0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249	LYNX1	P0DP58	116 aa		0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249	POLR2K	P53803	58 aa	Known RBP	0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249	LINC00158	P58513	81 aa		0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249	EP400	Q96L91	3159 aa		0.91	□□□□□ -2.26
PTPN21-209	ENST00000557249		I3L2K1	104 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	PRCD	Q00LT1	54 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	DEFB119	Q8N690	84 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	CRIPT	Q9P021	101 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	CDKN2A-AS1	Q9UH64	79 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	ABCA1	O95477	2261 aa		0.9	□□□□□ -2.27
PTPN21-209	ENST00000557249	USF3	Q68DE3	2245 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	ASXL3	Q9C0F0	2248 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	URB1	O60287	2271 aa	Known RBP	0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	DEFB108A	A8MXU0	73 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	RPL39P5	Q59GN2	51 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	SSBP3-AS1	Q7Z2R9	100 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	KMT2B	Q9UMN6	2715 aa	Predicted RBP	0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249	DOPEY2	Q9Y3R5	2298 aa		0.89	□□□□□ -2.27
PTPN21-209	ENST00000557249		H0YGG7	62 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249		J3QKU1	62 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249		K7EIL1	84 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249		K7EQZ3	153 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249	KRTAP12-3	P60328	96 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249	COX6A2	Q02221	97 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249	WFDC13	Q8IUB5	93 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249	UBE2DNL	Q8IWF7	75 aa		0.88	□□□□□ -2.27
PTPN21-209	ENST00000557249	ASCC3	Q8N3C0	2202 aa	Known RBP	0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249	DEFB131B	A0A096LNP1	70 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249	SPTY2D1-AS1	A0A0U1RR47	76 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249	WT1-AS	Q06250	92 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249		Q6ZSA8	131 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249		Q8IZM0	81 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249	BPTF	Q12830	3046 aa		0.87	□□□□□ -2.27
PTPN21-209	ENST00000557249		M0QY20	66 aa		0.86	□□□□□ -2.27
PTPN21-209	ENST00000557249	WFDC10B	Q8IUB3	73 aa		0.86	□□□□□ -2.27
PTPN21-209	ENST00000557249	ANKRD17	O75179	2603 aa	Known RBP	0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249		A8MTW9	85 aa		0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	ANG	P03950	147 aa	Known RBP	0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	TMEM167A	Q8TBQ9	72 aa		0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	TOMM7	Q9P0U1	55 aa		0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	FLG2	Q5D862	2391 aa	Predicted RBP	0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	ZDBF2	Q9HCK1	2354 aa		0.85	□□□□□ -2.27
PTPN21-209	ENST00000557249	ZFHX3	Q15911	3703 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249		H0YAA0	97 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249	MRPL33	O75394	65 aa	Known RBP	0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249	APELA	P0DMC3	54 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249	LELP1	Q5T871	98 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249	C10orf95	Q9H7T3	257 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249		U3KQA8	63 aa		0.84	□□□□□ -2.27
PTPN21-209	ENST00000557249	NAV3	Q8IVL0	2385 aa		0.84	□□□□□ -2.28
PTPN21-209	ENST00000557249	HTT	P42858	3142 aa		0.84	□□□□□ -2.28
PTPN21-209	ENST00000557249	CNTRL	Q7Z7A1	2325 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249		K7EIM0	57 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249	DEFB110	Q30KQ9	67 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249	MINOS1	Q5TGZ0	78 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249	COL6A6	A6NMZ7	2263 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249	JMJD1C	Q15652	2540 aa		0.83	□□□□□ -2.28
PTPN21-209	ENST00000557249	PDE4DIP	Q5VU43	2346 aa		0.82	□□□□□ -2.28
PTPN21-209	ENST00000557249	IGLV5-48	A0A075B6I7	105 aa		0.82	□□□□□ -2.28
PTPN21-209	ENST00000557249	MMP24-AS1	A0A0U1RRL7	71 aa		0.82	□□□□□ -2.28
PTPN21-209	ENST00000557249	DEFB1	P60022	68 aa		0.82	□□□□□ -2.28
PTPN21-209	ENST00000557249	DEFB133	Q30KQ1	61 aa		0.82	□□□□□ -2.28
PTPN21-209	ENST00000557249	C6orf48	Q9UBA6	75 aa		0.82	□□□□□ -2.28

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms