RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CYSTM1Q9H1C7 97 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 A0A0G2JQZ4 141 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 A0A1W2PNN7 141 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 C7orf33Q8WU49 177 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 PRR4Q16378 134 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 CASC10Q5T4H9 136 aa8.08□□□□□ -1.12
CCDC88C-211ENST00000556726 IGLV6-57P01721 117 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 ATP5EP2Q5VTU8 51 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 SERTAD4-AS1Q5TG53 156 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 LINC01600Q96MT4 127 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 PRR34Q9NV39 138 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 VPREB1P12018 145 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 PDE6GP18545 87 aa8.07□□□□□ -1.12
CCDC88C-211ENST00000556726 ST20-AS1Q8NBB2 130 aa8.06□□□□□ -1.12
CCDC88C-211ENST00000556726 AKAP9Q99996 3911 aa8.05□□□□□ -1.12
CCDC88C-211ENST00000556726 C15orf56Q8N910 161 aa8.05□□□□□ -1.12
CCDC88C-211ENST00000556726 FAM30AQ9NZY2 134 aa8.05□□□□□ -1.12
CCDC88C-211ENST00000556726 FAM236DA0A1B0GTK5 79 aa8.04□□□□□ -1.12
CCDC88C-211ENST00000556726 FAM236CP0DP71 79 aa8.04□□□□□ -1.12
CCDC88C-211ENST00000556726 PRLHP81277 87 aa8.04□□□□□ -1.12
CCDC88C-211ENST00000556726 LRCOL1A6NCL2 159 aa8.03□□□□□ -1.12
CCDC88C-211ENST00000556726 ELOF1P60002 83 aaKnown RBP8.03□□□□□ -1.12
CCDC88C-211ENST00000556726 TMEM258P61165 79 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 TM2D3Q9BRN9 247 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 C1orf137Q5JT78 98 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 HRCT1Q6UXD1 115 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 WFDC13Q8IUB5 93 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 MPLKIPQ8TAP9 179 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 CRYGAP11844 174 aa8.02□□□□□ -1.13
CCDC88C-211ENST00000556726 LINC00167Q96N53 147 aa8.01□□□□□ -1.13
CCDC88C-211ENST00000556726 LINC00588Q9Y4M8 146 aa8.01□□□□□ -1.13
CCDC88C-211ENST00000556726 LINC01556Q5JQF7 62 aa8□□□□□ -1.13
CCDC88C-211ENST00000556726 C2orf48Q96LS8 159 aa8□□□□□ -1.13
CCDC88C-211ENST00000556726 TENM2Q9NT68 2774 aa7.99□□□□□ -1.13
CCDC88C-211ENST00000556726 UBE2AP49459 152 aa7.99□□□□□ -1.13
CCDC88C-211ENST00000556726 OBSCN-AS1Q96MR7 158 aa7.99□□□□□ -1.13
CCDC88C-211ENST00000556726 TRAV7A0A075B6U4 112 aa7.98□□□□□ -1.13
CCDC88C-211ENST00000556726 CHTF8P0CG12 524 aa7.97□□□□□ -1.13
CCDC88C-211ENST00000556726 MRPL55Q7Z7F7 128 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-211ENST00000556726 H3BQ85 93 aa7.96□□□□□ -1.13
CCDC88C-211ENST00000556726 C4orf48Q5BLP8 95 aa7.96□□□□□ -1.13
CCDC88C-211ENST00000556726 GVQW2A0A096LPI5 108 aaPredicted RBP7.96□□□□□ -1.14
CCDC88C-211ENST00000556726 LINC00528Q8N1L1 170 aa7.96□□□□□ -1.14
CCDC88C-211ENST00000556726 DHRS4-AS1Q9P1J3 65 aa7.95□□□□□ -1.14
CCDC88C-211ENST00000556726 LOC110117498A0A087WWA1 95 aa7.95□□□□□ -1.14
CCDC88C-211ENST00000556726 C4orf26Q17RF5 130 aa7.95□□□□□ -1.14
CCDC88C-211ENST00000556726 A0A087WSZ3 146 aa7.94□□□□□ -1.14
CCDC88C-211ENST00000556726 H0Y9J4 135 aa7.93□□□□□ -1.14
CCDC88C-211ENST00000556726 ERC2-IT1O76042 136 aa7.93□□□□□ -1.14
CCDC88C-211ENST00000556726 REG3GQ6UW15 175 aa7.93□□□□□ -1.14
CCDC88C-211ENST00000556726 Q8N377 158 aa7.92□□□□□ -1.14
CCDC88C-211ENST00000556726 SMIM29Q86T20 159 aa7.92□□□□□ -1.14
CCDC88C-211ENST00000556726 TMEM254Q8TBM7 123 aa7.92□□□□□ -1.14
CCDC88C-211ENST00000556726 Q6ZRX8 168 aa7.9□□□□□ -1.14
CCDC88C-211ENST00000556726 IGLV9-49A0A0B4J1Y8 123 aa7.9□□□□□ -1.14
CCDC88C-211ENST00000556726 NDUFS5O43920 106 aa7.9□□□□□ -1.14
CCDC88C-211ENST00000556726 CXCL6P80162 114 aa7.9□□□□□ -1.14
CCDC88C-211ENST00000556726 TRBV7-4A0A0J9YYF1 115 aa7.9□□□□□ -1.15
CCDC88C-211ENST00000556726 H3BNG1 76 aa7.89□□□□□ -1.15
CCDC88C-211ENST00000556726 PHF5AQ7RTV0 110 aaKnown RBP7.89□□□□□ -1.15
CCDC88C-211ENST00000556726 ANK3Q12955 4377 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-211ENST00000556726 RPL37AP61513 92 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-211ENST00000556726 K7EIL1 84 aa7.88□□□□□ -1.15
CCDC88C-211ENST00000556726 DNAH10OSP0CZ25 163 aa7.88□□□□□ -1.15
CCDC88C-211ENST00000556726 BRK1Q8WUW1 75 aa7.87□□□□□ -1.15
CCDC88C-211ENST00000556726 Q9BRP9 147 aa7.86□□□□□ -1.15
CCDC88C-211ENST00000556726 KCNQ1DNQ9H478 68 aa7.86□□□□□ -1.15
CCDC88C-211ENST00000556726 A0A0U1RQV1 116 aa7.85□□□□□ -1.15
CCDC88C-211ENST00000556726 PRYO14603 147 aa7.85□□□□□ -1.15
CCDC88C-211ENST00000556726 LINC00476Q8WZB0 136 aa7.85□□□□□ -1.15
CCDC88C-211ENST00000556726 IGLV1-50A0A075B6I6 118 aa7.84□□□□□ -1.15
CCDC88C-211ENST00000556726 KRTAP26-1Q6PEX3 210 aa7.84□□□□□ -1.15
CCDC88C-211ENST00000556726 A0A1W2PNM2 257 aa7.83□□□□□ -1.16
CCDC88C-211ENST00000556726 K7EQZ3 153 aa7.83□□□□□ -1.16
CCDC88C-211ENST00000556726 CDK2AP2O75956 126 aa7.83□□□□□ -1.16
CCDC88C-211ENST00000556726 SPINK6Q6UWN8 80 aa7.83□□□□□ -1.16
CCDC88C-211ENST00000556726 LINC00474Q9P2X8 69 aa7.83□□□□□ -1.16
CCDC88C-211ENST00000556726 TRBV7-6A0A0J9YX20 115 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 H7BZZ5 65 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 MP68P56378 58 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 C5orf47Q569G3 176 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 Q8NBF4 154 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 LINC00208Q96KT6 92 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 B9D2Q9BPU9 175 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 PKIGQ9Y2B9 76 aa7.82□□□□□ -1.16
CCDC88C-211ENST00000556726 IGKV4-1P06312 121 aa7.81□□□□□ -1.16
CCDC88C-211ENST00000556726 SERP1Q9Y6X1 66 aa7.8□□□□□ -1.16
CCDC88C-211ENST00000556726 OXTP01178 125 aa7.79□□□□□ -1.16
CCDC88C-211ENST00000556726 SRRM2Q9UQ35 2752 aaKnown RBP7.78□□□□□ -1.16
CCDC88C-211ENST00000556726 EPM2AB3EWF7 344 aa7.78□□□□□ -1.16
CCDC88C-211ENST00000556726 CSMD3Q7Z407 3707 aa7.77□□□□□ -1.17
CCDC88C-211ENST00000556726 KRTAP1-5Q9BYS1 174 aa7.76□□□□□ -1.17
CCDC88C-211ENST00000556726 NDUFC1O43677 76 aa7.76□□□□□ -1.17
CCDC88C-211ENST00000556726 NDUFB1O75438 58 aa7.76□□□□□ -1.17
CCDC88C-211ENST00000556726 C14orf177Q52M58 125 aa7.76□□□□□ -1.17
CCDC88C-211ENST00000556726 MDFIQ99750 246 aa7.76□□□□□ -1.17
CCDC88C-211ENST00000556726 HCG22E2RYF7 251 aa7.75□□□□□ -1.17
CCDC88C-211ENST00000556726 IGFL1Q6UW32 110 aa7.75□□□□□ -1.17
CCDC88C-211ENST00000556726 SMIM26A0A096LP01 95 aa7.75□□□□□ -1.17
CCDC88C-211ENST00000556726 RPS28P62857 69 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms