RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SPRR1AP35321 89 aa5.65□□□□□ -1.5
SCFD1-220ENST00000556486 C10orf91Q5T1B1 145 aa5.65□□□□□ -1.5
SCFD1-220ENST00000556486 LINC00337Q8N6G1 96 aa5.65□□□□□ -1.5
SCFD1-220ENST00000556486 HIGD2AQ9BW72 106 aa5.65□□□□□ -1.5
SCFD1-220ENST00000556486 ZNF706Q9Y5V0 76 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-220ENST00000556486 KRTAP4-16G5E9R7 235 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-220ENST00000556486 NDUFA6P56556 154 aa5.64□□□□□ -1.51
SCFD1-220ENST00000556486 RHEBQ15382 184 aa5.64□□□□□ -1.51
SCFD1-220ENST00000556486 KRTAP13-3Q3SY46 172 aa5.64□□□□□ -1.51
SCFD1-220ENST00000556486 ASB16-AS1Q495Z4 193 aa5.64□□□□□ -1.51
SCFD1-220ENST00000556486 KRTAP9-8Q9BYQ0 159 aa5.64□□□□□ -1.51
SCFD1-220ENST00000556486 TMEM170BQ5T4T1 132 aa5.63□□□□□ -1.51
SCFD1-220ENST00000556486 BAGE3Q86Y29 109 aa5.63□□□□□ -1.51
SCFD1-220ENST00000556486 KCNQ1DNQ9H478 68 aa5.63□□□□□ -1.51
SCFD1-220ENST00000556486 SPINK1P00995 79 aa5.62□□□□□ -1.51
SCFD1-220ENST00000556486 LINC00158P58513 81 aa5.62□□□□□ -1.51
SCFD1-220ENST00000556486 RPS29P62273 56 aaKnown RBP5.62□□□□□ -1.51
SCFD1-220ENST00000556486 LINC00483Q53H64 154 aa5.62□□□□□ -1.51
SCFD1-220ENST00000556486 TRAV12-1A0A0B4J245 112 aa5.61□□□□□ -1.51
SCFD1-220ENST00000556486 TMEM223A0PJW6 202 aa5.61□□□□□ -1.51
SCFD1-220ENST00000556486 IFITM2Q01629 132 aa5.61□□□□□ -1.51
SCFD1-220ENST00000556486 PMCHL1Q16048 86 aa5.61□□□□□ -1.51
SCFD1-220ENST00000556486 DHRS4-AS1Q9P1J3 65 aa5.61□□□□□ -1.51
SCFD1-220ENST00000556486 TRAPPC1Q9Y5R8 145 aa5.6□□□□□ -1.51
SCFD1-220ENST00000556486 LOC107984156A0A0G2JMH3 177 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 LINC00587B1AMM8 73 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 MT1HP80294 61 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 ARL17AQ8IVW1 177 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 BOD1L2Q8IYS8 172 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 SMCR5Q8TEV8 140 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 RPS10P5Q9NQ39 176 aa5.59□□□□□ -1.51
SCFD1-220ENST00000556486 SMIM13P0DJ93 91 aa5.58□□□□□ -1.52
SCFD1-220ENST00000556486 MIR7-3HGQ8N6C7 128 aa5.58□□□□□ -1.52
SCFD1-220ENST00000556486 DAND5Q8N907 189 aa5.58□□□□□ -1.52
SCFD1-220ENST00000556486 ETDCA0A1B0GVM5 59 aa5.57□□□□□ -1.52
SCFD1-220ENST00000556486 SSBP3-AS1Q7Z2R9 100 aa5.57□□□□□ -1.52
SCFD1-220ENST00000556486 COMMD7Q86VX2 200 aa5.57□□□□□ -1.52
SCFD1-220ENST00000556486 FAM19A2Q8N3H0 131 aa5.57□□□□□ -1.52
SCFD1-220ENST00000556486 CHCHD1Q96BP2 118 aaKnown RBP5.57□□□□□ -1.52
SCFD1-220ENST00000556486 TRBV10-3A0A0K0K1G6 114 aa5.56□□□□□ -1.52
SCFD1-220ENST00000556486 TRBV10-2A0A0K0K1G8 114 aa5.56□□□□□ -1.52
SCFD1-220ENST00000556486 KRTAP19-2Q3LHN2 52 aa5.56□□□□□ -1.52
SCFD1-220ENST00000556486 Q8N377 158 aa5.56□□□□□ -1.52
SCFD1-220ENST00000556486 IFI27L1Q96BM0 104 aa5.56□□□□□ -1.52
SCFD1-220ENST00000556486 NCR3O14931 201 aa5.55□□□□□ -1.52
SCFD1-220ENST00000556486 S100A12P80511 92 aa5.55□□□□□ -1.52
SCFD1-220ENST00000556486 MEIG1Q5JSS6 88 aa5.55□□□□□ -1.52
SCFD1-220ENST00000556486 MAP1LC3CQ9BXW4 147 aa5.55□□□□□ -1.52
SCFD1-220ENST00000556486 NDUFA12Q9UI09 145 aa5.55□□□□□ -1.52
SCFD1-220ENST00000556486 MYMXA0A1B0GTQ4 84 aa5.54□□□□□ -1.52
SCFD1-220ENST00000556486 Q6ZRX8 168 aa5.54□□□□□ -1.52
SCFD1-220ENST00000556486 SLC25A20O43772 301 aa5.53□□□□□ -1.52
SCFD1-220ENST00000556486 ERC2-IT1O76042 136 aa5.53□□□□□ -1.52
SCFD1-220ENST00000556486 KRTAP10-6P60371 365 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-220ENST00000556486 MOBPQ13875 183 aa5.53□□□□□ -1.52
SCFD1-220ENST00000556486 YPEL4Q96NS1 127 aa5.53□□□□□ -1.52
SCFD1-220ENST00000556486 Q9BRP9 147 aa5.53□□□□□ -1.52
SCFD1-220ENST00000556486 NDUFC2O95298 119 aa5.52□□□□□ -1.53
SCFD1-220ENST00000556486 IGLV6-57P01721 117 aa5.52□□□□□ -1.53
SCFD1-220ENST00000556486 SPANXB1Q9NS25 103 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-220ENST00000556486 NDUFAF8A1L188 74 aa5.51□□□□□ -1.53
SCFD1-220ENST00000556486 SNAPINO95295 136 aa5.51□□□□□ -1.53
SCFD1-220ENST00000556486 DDTP30046 118 aa5.51□□□□□ -1.53
SCFD1-220ENST00000556486 TSPEAR-AS2P59090 65 aa5.51□□□□□ -1.53
SCFD1-220ENST00000556486 SVBPQ8N300 66 aa5.51□□□□□ -1.53
SCFD1-220ENST00000556486 APOC3P02656 99 aa5.5□□□□□ -1.53
SCFD1-220ENST00000556486 LEPROTO15243 131 aa5.49□□□□□ -1.53
SCFD1-220ENST00000556486 HSBP1O75506 76 aa5.49□□□□□ -1.53
SCFD1-220ENST00000556486 PLNP26678 52 aa5.49□□□□□ -1.53
SCFD1-220ENST00000556486 NMUP48645 174 aa5.49□□□□□ -1.53
SCFD1-220ENST00000556486 CXCL6P80162 114 aa5.49□□□□□ -1.53
SCFD1-220ENST00000556486 JOSD1Q15040 202 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-220ENST00000556486 J3QQQ9 107 aa5.48□□□□□ -1.53
SCFD1-220ENST00000556486 NDUFA5Q16718 116 aa5.48□□□□□ -1.53
SCFD1-220ENST00000556486 TRAV23DV6A0A075B6W5 121 aa5.47□□□□□ -1.53
SCFD1-220ENST00000556486 M0R2T5 61 aa5.47□□□□□ -1.53
SCFD1-220ENST00000556486 HIST1H4GQ99525 98 aa5.47□□□□□ -1.53
SCFD1-220ENST00000556486 MIEN1Q9BRT3 115 aa5.47□□□□□ -1.53
SCFD1-220ENST00000556486 ZNF73O43830 326 aaPredicted RBP5.46□□□□□ -1.54
SCFD1-220ENST00000556486 LEPROTL1O95214 131 aa5.46□□□□□ -1.54
SCFD1-220ENST00000556486 SPRR1BP22528 89 aa5.46□□□□□ -1.54
SCFD1-220ENST00000556486 S100A7L2Q5SY68 101 aa5.46□□□□□ -1.54
SCFD1-220ENST00000556486 IGLV8-61A0A075B6I0 122 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 DPM2O94777 84 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 HERVK_113P61574 105 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 PCOTHQ58A44 107 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 SOSTDC1Q6X4U4 206 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 CBY1Q9Y3M2 126 aa5.45□□□□□ -1.54
SCFD1-220ENST00000556486 HSPB8Q9UJY1 196 aa5.44□□□□□ -1.54
SCFD1-220ENST00000556486 LGALS3P17931 250 aaKnown RBP5.43□□□□□ -1.54
SCFD1-220ENST00000556486 C9orf153Q5TBE3 101 aa5.43□□□□□ -1.54
SCFD1-220ENST00000556486 ST20-AS1Q8NBB2 130 aa5.43□□□□□ -1.54
SCFD1-220ENST00000556486 LIMD2Q9BT23 127 aa5.43□□□□□ -1.54
SCFD1-220ENST00000556486 SSPOA2VEC9 5147 aa5.43□□□□□ -1.54
SCFD1-220ENST00000556486 A0A0J9YXY3 114 aa5.42□□□□□ -1.54
SCFD1-220ENST00000556486 HSBP1L1C9JCN9 74 aa5.42□□□□□ -1.54
SCFD1-220ENST00000556486 SERF1AO75920 110 aa5.42□□□□□ -1.54
SCFD1-220ENST00000556486 IGKCP01834 107 aa5.42□□□□□ -1.54
SCFD1-220ENST00000556486 SLC25A34Q6PIV7 304 aa5.42□□□□□ -1.54
SCFD1-220ENST00000556486 USH2AO75445 5202 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms