RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 FUSP35637 526 aaKnown RBP eCLIP9.99□□□□□ -0.811e-7■■■■□ 22.5
CUX1-215ENST00000556210 V9GYY9 64 aa9.99□□□□□ -0.81
CUX1-215ENST00000556210 H3BQ85 93 aa9.98□□□□□ -0.81
CUX1-215ENST00000556210 NDUFC2-KCTD14E9PQ53 114 aa9.98□□□□□ -0.81
CUX1-215ENST00000556210 EGFEM1PQ0D2K5 195 aa9.98□□□□□ -0.81
CUX1-215ENST00000556210 TRAV10A0A0B4J240 114 aa9.98□□□□□ -0.81
CUX1-215ENST00000556210 BPY2O14599 106 aa9.98□□□□□ -0.81
CUX1-215ENST00000556210 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.96□□□□□ -0.81
CUX1-215ENST00000556210 MUC7Q8TAX7 377 aa9.96□□□□□ -0.82
CUX1-215ENST00000556210 TENM3Q9P273 2699 aa9.95□□□□□ -0.82
CUX1-215ENST00000556210 Q6ZQT0 140 aa9.95□□□□□ -0.82
CUX1-215ENST00000556210 LINC00612Q8N6U2 182 aa9.95□□□□□ -0.82
CUX1-215ENST00000556210 Q8NDZ9 215 aa9.95□□□□□ -0.82
CUX1-215ENST00000556210 SERP1Q9Y6X1 66 aa9.95□□□□□ -0.82
CUX1-215ENST00000556210 ZNF469Q96JG9 3925 aaPredicted RBP9.94□□□□□ -0.82
CUX1-215ENST00000556210 PKD1L1Q8TDX9 2849 aa9.94□□□□□ -0.82
CUX1-215ENST00000556210 LRCOL1A6NCL2 159 aa9.93□□□□□ -0.82
CUX1-215ENST00000556210 DEFB116Q30KQ4 102 aa9.93□□□□□ -0.82
CUX1-215ENST00000556210 Q6ZRP5 223 aa9.93□□□□□ -0.82
CUX1-215ENST00000556210 OBSCN-AS1Q96MR7 158 aa9.93□□□□□ -0.82
CUX1-215ENST00000556210 FAM168BA1KXE4 195 aa9.92□□□□□ -0.82
CUX1-215ENST00000556210 C1orf195Q5TG92 126 aa9.92□□□□□ -0.82
CUX1-215ENST00000556210 SMIM26A0A096LP01 95 aa9.9□□□□□ -0.82
CUX1-215ENST00000556210 C7orf33Q8WU49 177 aa9.89□□□□□ -0.83
CUX1-215ENST00000556210 UBE2AP49459 152 aa9.89□□□□□ -0.83
CUX1-215ENST00000556210 CASC10Q5T4H9 136 aa9.89□□□□□ -0.83
CUX1-215ENST00000556210 NDUFC1O43677 76 aa9.88□□□□□ -0.83
CUX1-215ENST00000556210 PRLHP81277 87 aa9.88□□□□□ -0.83
CUX1-215ENST00000556210 TM2D3Q9BRN9 247 aa9.88□□□□□ -0.83
CUX1-215ENST00000556210 PRR4Q16378 134 aa9.87□□□□□ -0.83
CUX1-215ENST00000556210 LINC00588Q9Y4M8 146 aa9.86□□□□□ -0.83
CUX1-215ENST00000556210 TMEM254Q8TBM7 123 aa9.86□□□□□ -0.83
CUX1-215ENST00000556210 PRR34Q9NV39 138 aa9.86□□□□□ -0.83
CUX1-215ENST00000556210 CXCL6P80162 114 aa9.86□□□□□ -0.83
CUX1-215ENST00000556210 SERTAD4-AS1Q5TG53 156 aa9.86□□□□□ -0.83
CUX1-215ENST00000556210 ST20-AS1Q8NBB2 130 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 LOC110117498A0A087WWA1 95 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 A0A0G2JQZ4 141 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 A0A1W2PNN7 141 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 SPTSSBQ8NFR3 76 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 TRRAPQ9Y4A5 3859 aa9.85□□□□□ -0.83
CUX1-215ENST00000556210 VPREB1P12018 145 aa9.84□□□□□ -0.83
CUX1-215ENST00000556210 LINC01556Q5JQF7 62 aa9.84□□□□□ -0.83
CUX1-215ENST00000556210 C15orf56Q8N910 161 aa9.84□□□□□ -0.83
CUX1-215ENST00000556210 FAM30AQ9NZY2 134 aa9.83□□□□□ -0.84
CUX1-215ENST00000556210 TRBV7-6A0A0J9YX20 115 aa9.83□□□□□ -0.84
CUX1-215ENST00000556210 IGLV6-57P01721 117 aa9.83□□□□□ -0.84
CUX1-215ENST00000556210 LINC00167Q96N53 147 aa9.83□□□□□ -0.84
CUX1-215ENST00000556210 C1orf137Q5JT78 98 aa9.82□□□□□ -0.84
CUX1-215ENST00000556210 WFDC13Q8IUB5 93 aa9.82□□□□□ -0.84
CUX1-215ENST00000556210 H7BZZ5 65 aa9.81□□□□□ -0.84
CUX1-215ENST00000556210 CHTF8P0CG12 524 aa9.8□□□□□ -0.84
CUX1-215ENST00000556210 MRPL55Q7Z7F7 128 aaKnown RBP9.8□□□□□ -0.84
CUX1-215ENST00000556210 ATP5EP56381 51 aaPredicted RBP9.79□□□□□ -0.84
CUX1-215ENST00000556210 ELOF1P60002 83 aaKnown RBP9.79□□□□□ -0.84
CUX1-215ENST00000556210 PRYO14603 147 aa9.79□□□□□ -0.84
CUX1-215ENST00000556210 BCE1O60756 84 aa9.78□□□□□ -0.84
CUX1-215ENST00000556210 PRO0628Q9UI54 55 aa9.78□□□□□ -0.84
CUX1-215ENST00000556210 OXTP01178 125 aa9.78□□□□□ -0.84
CUX1-215ENST00000556210 H0Y9J4 135 aa9.78□□□□□ -0.84
CUX1-215ENST00000556210 SEC61GP60059 68 aa9.77□□□□□ -0.85
CUX1-215ENST00000556210 DHRS4-AS1Q9P1J3 65 aa9.76□□□□□ -0.85
CUX1-215ENST00000556210 NDUFS5O43920 106 aa9.76□□□□□ -0.85
CUX1-215ENST00000556210 LINC00474Q9P2X8 69 aa9.76□□□□□ -0.85
CUX1-215ENST00000556210 KLKP1Q107X0 134 aa9.75□□□□□ -0.85
CUX1-215ENST00000556210 REG3GQ6UW15 175 aa9.75□□□□□ -0.85
CUX1-215ENST00000556210 IGLV9-49A0A0B4J1Y8 123 aa9.74□□□□□ -0.85
CUX1-215ENST00000556210 K7EIL1 84 aa9.74□□□□□ -0.85
CUX1-215ENST00000556210 A0A087WSZ3 146 aa9.73□□□□□ -0.85
CUX1-215ENST00000556210 LINC00336Q6ZUF6 198 aa9.73□□□□□ -0.85
CUX1-215ENST00000556210 TENM2Q9NT68 2774 aa9.72□□□□□ -0.85
CUX1-215ENST00000556210 GVQW2A0A096LPI5 108 aaPredicted RBP9.72□□□□□ -0.85
CUX1-215ENST00000556210 CDK2AP2O75956 126 aa9.71□□□□□ -0.85
CUX1-215ENST00000556210 PSPHP1O15172 72 aa9.71□□□□□ -0.86
CUX1-215ENST00000556210 MP68P56378 58 aa9.71□□□□□ -0.86
CUX1-215ENST00000556210 H3BNG1 76 aa9.71□□□□□ -0.86
CUX1-215ENST00000556210 TRBV7-4A0A0J9YYF1 115 aa9.7□□□□□ -0.86
CUX1-215ENST00000556210 Q5XG85 94 aa9.7□□□□□ -0.86
CUX1-215ENST00000556210 SMIM29Q86T20 159 aa9.7□□□□□ -0.86
CUX1-215ENST00000556210 LINC00528Q8N1L1 170 aa9.7□□□□□ -0.86
CUX1-215ENST00000556210 PHF5AQ7RTV0 110 aaKnown RBP9.7□□□□□ -0.86
CUX1-215ENST00000556210 DNAH10OSP0CZ25 163 aa9.68□□□□□ -0.86
CUX1-215ENST00000556210 ERC2-IT1O76042 136 aa9.67□□□□□ -0.86
CUX1-215ENST00000556210 Q6ZRX8 168 aa9.67□□□□□ -0.86
CUX1-215ENST00000556210 SPINK6Q6UWN8 80 aa9.67□□□□□ -0.86
CUX1-215ENST00000556210 B9D2Q9BPU9 175 aa9.66□□□□□ -0.86
CUX1-215ENST00000556210 Q8N377 158 aa9.66□□□□□ -0.86
CUX1-215ENST00000556210 Q9BRP9 147 aa9.65□□□□□ -0.86
CUX1-215ENST00000556210 PMAIP1Q13794 54 aa9.65□□□□□ -0.87
CUX1-215ENST00000556210 LY6G6CO95867 125 aa9.64□□□□□ -0.87
CUX1-215ENST00000556210 C14orf177Q52M58 125 aa9.63□□□□□ -0.87
CUX1-215ENST00000556210 MDFIQ99750 246 aa9.62□□□□□ -0.87
CUX1-215ENST00000556210 RPL37AP61513 92 aaKnown RBP9.62□□□□□ -0.87
CUX1-215ENST00000556210 IGKV4-1P06312 121 aa9.62□□□□□ -0.87
CUX1-215ENST00000556210 LINC00476Q8WZB0 136 aa9.6□□□□□ -0.87
CUX1-215ENST00000556210 KCNQ1DNQ9H478 68 aa9.6□□□□□ -0.87
CUX1-215ENST00000556210 IGLV1-50A0A075B6I6 118 aa9.59□□□□□ -0.87
CUX1-215ENST00000556210 NDUFB1O75438 58 aa9.59□□□□□ -0.87
CUX1-215ENST00000556210 LINC00208Q96KT6 92 aa9.59□□□□□ -0.87
CUX1-215ENST00000556210 WIPF1O43516 503 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms