RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 GTF2H5Q6ZYL4 71 aa5.51□□□□□ -1.53
VIPAS39-207ENST00000555854 TAX1BP3O14907 124 aa5.5□□□□□ -1.53
VIPAS39-207ENST00000555854 SMIM13P0DJ93 91 aa5.5□□□□□ -1.53
VIPAS39-207ENST00000555854 VAMP3Q15836 100 aa5.5□□□□□ -1.53
VIPAS39-207ENST00000555854 C9orf118A6NHY6 69 aa5.49□□□□□ -1.53
VIPAS39-207ENST00000555854 E9PLD3 99 aa5.49□□□□□ -1.53
VIPAS39-207ENST00000555854 VPREB1P12018 145 aa5.49□□□□□ -1.53
VIPAS39-207ENST00000555854 NMUP48645 174 aa5.49□□□□□ -1.53
VIPAS39-207ENST00000555854 TMEM238LA0A1B0GVL6 79 aa5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 PFN2P35080 140 aa5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 RPL13AP40429 203 aaKnown RBP5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 KRTAP13-2Q52LG2 175 aa5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 ZNF625Q96I27 306 aaPredicted RBP5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 KRTAP4-11Q9BYQ6 195 aa5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 ANAPC11Q9NYG5 84 aa5.48□□□□□ -1.53
VIPAS39-207ENST00000555854 IGKV2-28A0A075B6P5 120 aa5.47□□□□□ -1.53
VIPAS39-207ENST00000555854 IGKV2D-28P01615 120 aa5.47□□□□□ -1.53
VIPAS39-207ENST00000555854 RPL28P46779 137 aaKnown RBP5.47□□□□□ -1.53
VIPAS39-207ENST00000555854 SND1-IT1Q9HBX3 110 aa5.47□□□□□ -1.53
VIPAS39-207ENST00000555854 ERG28Q9UKR5 140 aa5.47□□□□□ -1.53
VIPAS39-207ENST00000555854 MYMXA0A1B0GTQ4 84 aa5.46□□□□□ -1.54
VIPAS39-207ENST00000555854 PCP2Q8IVA1 136 aa5.46□□□□□ -1.54
VIPAS39-207ENST00000555854 CEND1Q8N111 149 aa5.46□□□□□ -1.54
VIPAS39-207ENST00000555854 NKAPP1Q8N9T2 125 aa5.46□□□□□ -1.54
VIPAS39-207ENST00000555854 CBY1Q9Y3M2 126 aa5.46□□□□□ -1.54
VIPAS39-207ENST00000555854 TMEM238C9JI98 176 aa5.45□□□□□ -1.54
VIPAS39-207ENST00000555854 FABP2P12104 132 aa5.45□□□□□ -1.54
VIPAS39-207ENST00000555854 PRLHP81277 87 aa5.45□□□□□ -1.54
VIPAS39-207ENST00000555854 PLEKHB2Q96CS7 222 aa5.45□□□□□ -1.54
VIPAS39-207ENST00000555854 TMEM223A0PJW6 202 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 M0R378 163 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 TMEM170BQ5T4T1 132 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 LYRM7Q5U5X0 104 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 HIST1H4GQ99525 98 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 TMEM126AQ9H061 195 aa5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 SPANXB1Q9NS25 103 aaPredicted RBP5.44□□□□□ -1.54
VIPAS39-207ENST00000555854 IGKV2D-26A0A0A0MRZ7 120 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 A0A1B0GWB2 263 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 K7ERU9 68 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 TSPAN13O95857 204 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 CRYGAP11844 174 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 UBE2AP49459 152 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 PRR4Q16378 134 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 Q6ZVH6 145 aa5.43□□□□□ -1.54
VIPAS39-207ENST00000555854 A0A1W2PPM0 123 aa5.42□□□□□ -1.54
VIPAS39-207ENST00000555854 K7EP34 96 aa5.42□□□□□ -1.54
VIPAS39-207ENST00000555854 LEPROTO15243 131 aa5.42□□□□□ -1.54
VIPAS39-207ENST00000555854 COX17Q14061 63 aa5.42□□□□□ -1.54
VIPAS39-207ENST00000555854 TYMSOSQ8TAI1 123 aa5.42□□□□□ -1.54
VIPAS39-207ENST00000555854 A0A0U1RRA0 63 aa5.41□□□□□ -1.54
VIPAS39-207ENST00000555854 ZNF815PA8K554 130 aa5.41□□□□□ -1.54
VIPAS39-207ENST00000555854 TSPEAR-AS2P59090 65 aa5.41□□□□□ -1.54
VIPAS39-207ENST00000555854 SCGB1D4Q6XE38 83 aa5.41□□□□□ -1.54
VIPAS39-207ENST00000555854 FAM19A1Q7Z5A9 133 aa5.41□□□□□ -1.54
VIPAS39-207ENST00000555854 F8W1H4 67 aa5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 H3BUT2 72 aa5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 J3QQQ9 107 aa5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 LGALS3P17931 250 aaKnown RBP5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 FAM229BQ4G0N7 80 aa5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 COPS9Q8WXC6 57 aa5.4□□□□□ -1.54
VIPAS39-207ENST00000555854 J3QR89 54 aa5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 FXYD2P54710 66 aa5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 RPL24P83731 157 aaKnown RBP5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 SFTA2Q6UW10 78 aa5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 C3orf22Q8N5N4 141 aa5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 NHP2Q9NX24 153 aaKnown RBP5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 SPCS1Q9Y6A9 102 aa5.39□□□□□ -1.55
VIPAS39-207ENST00000555854 TRBV20-1A0A075B6N2 111 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 A0A0J9YXY3 114 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 LINC00158P58513 81 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 MIR7-3HGQ8N6C7 128 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 RETNLBQ9BQ08 111 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 PPDPFQ9H3Y8 114 aa5.38□□□□□ -1.55
VIPAS39-207ENST00000555854 NCR3O14931 201 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 TIMM17BO60830 172 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 IFITM1P13164 125 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 SPRR1AP35321 89 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 OCIAD2Q56VL3 154 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 LINC00304Q8N9R0 145 aa5.37□□□□□ -1.55
VIPAS39-207ENST00000555854 KRTAP4-16G5E9R7 235 aaPredicted RBP5.36□□□□□ -1.55
VIPAS39-207ENST00000555854 RAB37Q96AX2 223 aa5.36□□□□□ -1.55
VIPAS39-207ENST00000555854 SPRR4Q96PI1 79 aa5.36□□□□□ -1.55
VIPAS39-207ENST00000555854 HIGD2AQ9BW72 106 aa5.36□□□□□ -1.55
VIPAS39-207ENST00000555854 PRYO14603 147 aa5.35□□□□□ -1.55
VIPAS39-207ENST00000555854 MEIG1Q5JSS6 88 aa5.35□□□□□ -1.55
VIPAS39-207ENST00000555854 DAND5Q8N907 189 aa5.35□□□□□ -1.55
VIPAS39-207ENST00000555854 TTTY13Q9BZ97 58 aa5.35□□□□□ -1.55
VIPAS39-207ENST00000555854 NDUFA12Q9UI09 145 aa5.35□□□□□ -1.55
VIPAS39-207ENST00000555854 A0A0B4J2C4 111 aa5.34□□□□□ -1.55
VIPAS39-207ENST00000555854 HERV-K104P63124 156 aa5.34□□□□□ -1.55
VIPAS39-207ENST00000555854 SMCR5Q8TEV8 140 aa5.34□□□□□ -1.55
VIPAS39-207ENST00000555854 KCNQ1DNQ9H478 68 aa5.34□□□□□ -1.55
VIPAS39-207ENST00000555854 PRO1854Q9UHT4 67 aa5.34□□□□□ -1.55
VIPAS39-207ENST00000555854 TRBV10-3A0A0K0K1G6 114 aa5.33□□□□□ -1.56
VIPAS39-207ENST00000555854 LINC00337Q8N6G1 96 aa5.33□□□□□ -1.56
VIPAS39-207ENST00000555854 SPANXDQ9BXN6 97 aa5.33□□□□□ -1.56
VIPAS39-207ENST00000555854 SPANXCQ9NY87 97 aa5.33□□□□□ -1.56
VIPAS39-207ENST00000555854 LOC107984156A0A0G2JMH3 177 aa5.32□□□□□ -1.56
VIPAS39-207ENST00000555854 ARL17AQ8IVW1 177 aa5.32□□□□□ -1.56
VIPAS39-207ENST00000555854 ERC2-IT1O76042 136 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms