RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 SPTBN2O15020 2390 aa1.3□□□□□ -2.2
VRK1-203ENST00000555067 EFCAB6Q5THR3 1501 aa1.3□□□□□ -2.2
VRK1-203ENST00000555067 NCBP2-AS2Q69YL0 99 aa1.3□□□□□ -2.2
VRK1-203ENST00000555067 POLQO75417 2590 aa1.3□□□□□ -2.2
VRK1-203ENST00000555067 CACNA1EQ15878 2313 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 FAM208AQ9UK61 1670 aaKnown RBP1.29□□□□□ -2.2
VRK1-203ENST00000555067 SPTY2D1-AS1A0A0U1RR47 76 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 UBL5Q9BZL1 73 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 USF3Q68DE3 2245 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 ADCY10Q96PN6 1610 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 C3P01024 1663 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 NRAPQ86VF7 1730 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 ANKRD36CQ5JPF3 1778 aa1.29□□□□□ -2.2
VRK1-203ENST00000555067 HMGA1P17096 107 aaKnown RBP1.28□□□□□ -2.2
VRK1-203ENST00000555067 ENHOQ6UWT2 76 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 NMES1Q9C002 83 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 TRPM2O94759 1503 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 AGLP35573 1532 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 BCORQ6W2J9 1755 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 F8P00451 2351 aa1.28□□□□□ -2.2
VRK1-203ENST00000555067 TSC2P49815 1807 aa1.27□□□□□ -2.21
VRK1-203ENST00000555067 USMG5Q96IX5 58 aa1.27□□□□□ -2.21
VRK1-203ENST00000555067 CMC2Q9NRP2 79 aa1.27□□□□□ -2.21
VRK1-203ENST00000555067 NRXN3Q9Y4C0 1643 aa1.26□□□□□ -2.21
VRK1-203ENST00000555067 ABCC8Q09428 1581 aa1.26□□□□□ -2.21
VRK1-203ENST00000555067 NDUFA4O00483 81 aa1.26□□□□□ -2.21
VRK1-203ENST00000555067 LY75O60449 1722 aa1.26□□□□□ -2.21
VRK1-203ENST00000555067 TJP1Q07157 1748 aa1.26□□□□□ -2.21
VRK1-203ENST00000555067 K7EMI3 77 aa1.25□□□□□ -2.21
VRK1-203ENST00000555067 RPL38P63173 70 aaKnown RBP1.25□□□□□ -2.21
VRK1-203ENST00000555067 ABRACLQ9P1F3 81 aa1.25□□□□□ -2.21
VRK1-203ENST00000555067 PIEZO2Q9H5I5 2752 aa1.25□□□□□ -2.21
VRK1-203ENST00000555067 NWD1Q149M9 1564 aa1.25□□□□□ -2.21
VRK1-203ENST00000555067 CDC42BPAQ5VT25 1732 aa1.24□□□□□ -2.21
VRK1-203ENST00000555067 LCE6AA0A183 80 aa1.24□□□□□ -2.21
VRK1-203ENST00000555067 PLNP26678 52 aa1.24□□□□□ -2.21
VRK1-203ENST00000555067 SERF2P84101 59 aa1.24□□□□□ -2.21
VRK1-203ENST00000555067 PTPRZ1P23471 2315 aaPredicted RBP1.23□□□□□ -2.21
VRK1-203ENST00000555067 I3L3M4 83 aa1.23□□□□□ -2.21
VRK1-203ENST00000555067 M0R1W7 72 aa1.23□□□□□ -2.21
VRK1-203ENST00000555067 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.22□□□□□ -2.21
VRK1-203ENST00000555067 NFAT5O94916 1531 aa1.22□□□□□ -2.21
VRK1-203ENST00000555067 COX6B1P14854 86 aa1.22□□□□□ -2.21
VRK1-203ENST00000555067 TIMM8BQ9Y5J9 83 aaPredicted RBP1.22□□□□□ -2.21
VRK1-203ENST00000555067 DDX60LQ5H9U9 1706 aaKnown RBP1.22□□□□□ -2.21
VRK1-203ENST00000555067 BDP1A6H8Y1 2624 aa1.21□□□□□ -2.22
VRK1-203ENST00000555067 PTPRQQ9UMZ3 2332 aa1.21□□□□□ -2.22
VRK1-203ENST00000555067 CPSF4LA6NMK7 179 aaKnown RBP1.21□□□□□ -2.22
VRK1-203ENST00000555067 ABCA12Q86UK0 2595 aa1.21□□□□□ -2.22
VRK1-203ENST00000555067 DEPDC5O75140 1603 aa1.2□□□□□ -2.22
VRK1-203ENST00000555067 SMIM27A0A1W2PRY6 76 aa1.2□□□□□ -2.22
VRK1-203ENST00000555067 Q5VSD8 79 aa1.2□□□□□ -2.22
VRK1-203ENST00000555067 ETDCA0A1B0GVM5 59 aa1.19□□□□□ -2.22
VRK1-203ENST00000555067 MRPL33O75394 65 aaKnown RBP1.19□□□□□ -2.22
VRK1-203ENST00000555067 DEFB114Q30KQ6 69 aa1.19□□□□□ -2.22
VRK1-203ENST00000555067 MROH2BQ7Z745 1585 aa1.19□□□□□ -2.22
VRK1-203ENST00000555067 MRPL34Q9BQ48 92 aaKnown RBP1.19□□□□□ -2.22
VRK1-203ENST00000555067 ZNF292O60281 2723 aa1.19□□□□□ -2.22
VRK1-203ENST00000555067 PIEZO1Q92508 2521 aa1.19□□□□□ -2.22
VRK1-203ENST00000555067 SPTBN1Q01082 2364 aaKnown RBP1.18□□□□□ -2.22
VRK1-203ENST00000555067 SPINK4O60575 86 aa1.18□□□□□ -2.22
VRK1-203ENST00000555067 SPRR1AP35321 89 aa1.18□□□□□ -2.22
VRK1-203ENST00000555067 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
VRK1-203ENST00000555067 KIF21BO75037 1637 aa1.18□□□□□ -2.22
VRK1-203ENST00000555067 ATP7AQ04656 1500 aa1.17□□□□□ -2.22
VRK1-203ENST00000555067 IGIPA6NJ69 53 aa1.17□□□□□ -2.22
VRK1-203ENST00000555067 KCNQ1DNQ9H478 68 aa1.17□□□□□ -2.22
VRK1-203ENST00000555067 TOGARAM1Q9Y4F4 1720 aa1.17□□□□□ -2.22
VRK1-203ENST00000555067 SPRR1BP22528 89 aa1.16□□□□□ -2.22
VRK1-203ENST00000555067 AHNAK2Q8IVF2 5795 aa1.16□□□□□ -2.22
VRK1-203ENST00000555067 FRAS1Q86XX4 4008 aa1.15□□□□□ -2.22
VRK1-203ENST00000555067 NDUFA3O95167 84 aa1.15□□□□□ -2.23
VRK1-203ENST00000555067 CNOT1A5YKK6 2376 aaKnown RBP1.15□□□□□ -2.23
VRK1-203ENST00000555067 DDX60Q8IY21 1712 aaKnown RBP1.15□□□□□ -2.23
VRK1-203ENST00000555067 IQGAP1P46940 1657 aa1.14□□□□□ -2.23
VRK1-203ENST00000555067 TNRC6CQ9HCJ0 1690 aaKnown RBP1.14□□□□□ -2.23
VRK1-203ENST00000555067 GVINP1Q7Z2Y8 2422 aa1.14□□□□□ -2.23
VRK1-203ENST00000555067 DEFB131BA0A096LNP1 70 aa1.14□□□□□ -2.23
VRK1-203ENST00000555067 H0YGX0 51 aa1.14□□□□□ -2.23
VRK1-203ENST00000555067 TNCP24821 2201 aa1.13□□□□□ -2.23
VRK1-203ENST00000555067 SAMD9LQ8IVG5 1584 aa1.13□□□□□ -2.23
VRK1-203ENST00000555067 LINC01546A6NGU7 62 aa1.13□□□□□ -2.23
VRK1-203ENST00000555067 SNRPGP62308 76 aaKnown RBP1.13□□□□□ -2.23
VRK1-203ENST00000555067 FBN2P35556 2912 aa1.13□□□□□ -2.23
VRK1-203ENST00000555067 CHD9Q3L8U1 2897 aa1.13□□□□□ -2.23
VRK1-203ENST00000555067 C4AP0C0L4 1744 aa1.12□□□□□ -2.23
VRK1-203ENST00000555067 DEFB105AQ8NG35 78 aa1.12□□□□□ -2.23
VRK1-203ENST00000555067 APLNQ9ULZ1 77 aa1.12□□□□□ -2.23
VRK1-203ENST00000555067 TPRP12270 2363 aaKnown RBP1.12□□□□□ -2.23
VRK1-203ENST00000555067 ANK2Q01484 3957 aa1.12□□□□□ -2.23
VRK1-203ENST00000555067 CELSR2Q9HCU4 2923 aa1.12□□□□□ -2.23
VRK1-203ENST00000555067 C4BP0C0L5 1744 aa1.11□□□□□ -2.23
VRK1-203ENST00000555067 LMO7Q8WWI1 1683 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 DUOX1Q9NRD9 1551 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 CCL22O00626 93 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 KRTAP2-3P0C7H8 128 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 CRIP1P50238 77 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 LINC00158P58513 81 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 LELP1Q5T871 98 aa1.1□□□□□ -2.23
VRK1-203ENST00000555067 SPINK6Q6UWN8 80 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms