RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 RPS20P60866 119 aaKnown RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 RAB14P61106 215 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 RPL39P62891 51 aaKnown RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 KRTAP13-4Q3LI77 160 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 PACRGLQ8N7B6 248 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 PLEKHB2Q96CS7 222 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 KRTAP2-4Q9BYR9 128 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 WDR61Q9GZS3 305 aaKnown RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 NIT2Q9NQR4 276 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 BATF3Q9NR55 127 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 LYRM2Q9NU23 88 aaPredicted RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 MRPL35Q9NZE8 188 aaKnown RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 CACFD1Q9UGQ2 172 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 EPDR1Q9UM22 224 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 PKIGQ9Y2B9 76 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 A0A087WXM4 84 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 C7orf77A4D0Y5 90 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 ZNF727A8MUV8 499 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 C1orf196B1AJZ1 125 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 NUPR1O60356 82 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 ATP5HO75947 161 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 GCHFRP30047 84 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 FCER1GP30273 86 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 FAUP35544 74 aaKnown RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 AKR1C3P42330 323 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 AP3S2P59780 193 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 CKS1BP61024 79 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 TMEM97Q5BJF2 176 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 SAPCD1Q5SSQ6 148 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 FAM19A2Q8N3H0 131 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 AP3S1Q92572 193 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 ZNF625Q96I27 306 aaPredicted RBP0.56□□□□□ -2.32
PRPF39-208ENST00000554785 CCDC32Q9BV29 185 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 IMUPQ9GZP8 106 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 TMEM126AQ9H061 195 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 CDC42SE2Q9NRR3 84 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 LINC00846Q9NV44 126 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 PRO2289Q9P1D8 64 aa0.56□□□□□ -2.32
PRPF39-208ENST00000554785 TGIF2-C20orf24A0A0A6YYL0 155 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 CCDC160A6NGH7 325 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 J3QQQ9 107 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SSNA1O43805 119 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SPINK1P00995 79 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 NPYP01303 97 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SPRR2DP22532 72 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 DDTP30046 118 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 JOSD1Q15040 202 aaPredicted RBP0.55□□□□□ -2.32
PRPF39-208ENST00000554785 LYZL1Q6UWQ5 148 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 AKAP14Q86UN6 197 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SMCR5Q8TEV8 140 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SPRR4Q96PI1 79 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 GGACTQ9BVM4 153 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TIMM21Q9BVV7 248 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 KRTAP2-1Q9BYU5 128 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TRBV20-1A0A075B6N2 111 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 C20orf202A1L168 122 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 I3L3M4 83 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 M0R378 163 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 NCR3O14931 201 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TRGC1P0CF51 173 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 ZNF25P17030 456 aaPredicted RBP0.55□□□□□ -2.32
PRPF39-208ENST00000554785 RPL37P61927 97 aaKnown RBP0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TRIQKQ629K1 86 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SPAG11AQ6PDA7 123 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 SLC51BQ86UW2 128 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 OBSCN-AS1Q96MR7 158 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 MRPS26Q9BYN8 205 aaKnown RBP0.55□□□□□ -2.32
PRPF39-208ENST00000554785 MAP1LC3AQ9H492 121 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TP73-AS1Q9UF72 201 aa0.55□□□□□ -2.32
PRPF39-208ENST00000554785 TRBV20OR9-2A0A075B6H5 130 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 FXYD6-FXYD2A0A087WZ82 144 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 TRBV30A0A0K0K1B3 111 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 ERC2-IT1O76042 136 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 NDUFB6O95139 128 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 CEBPGP53567 150 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 MRPS10P82664 201 aaKnown RBP0.54□□□□□ -2.32
PRPF39-208ENST00000554785 RPL7L1Q6DKI1 246 aaKnown RBP0.54□□□□□ -2.32
PRPF39-208ENST00000554785 ATP11AUNQ6ZP68 121 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 COMMD7Q86VX2 200 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 BAGE2Q86Y30 109 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 PPP1R1CQ8WVI7 109 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 PTH2Q96A98 100 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 SLC25A21Q9BQT8 299 aaPredicted RBP0.54□□□□□ -2.32
PRPF39-208ENST00000554785 TTTY13Q9BZ97 58 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 TMEM191AQ9H0A3 160 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 VCX3BQ9H321 246 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 ST20Q9HBF5 79 aa0.54□□□□□ -2.32
PRPF39-208ENST00000554785 RSL24D1Q9UHA3 163 aaKnown RBP0.54□□□□□ -2.32
PRPF39-208ENST00000554785 PIGBOS1A0A0B4J2F0 54 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 ETDCA0A1B0GVM5 59 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 A0A1B0GW54 56 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 MAP1LC3B2A6NCE7 125 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 F8VRH5 84 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 IFNA1P01562 189 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 RPL35P42766 123 aaKnown RBP0.53□□□□□ -2.32
PRPF39-208ENST00000554785 TMEM258P61165 79 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 HBBP68871 147 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 SSBP1Q04837 148 aaKnown RBP0.53□□□□□ -2.32
PRPF39-208ENST00000554785 MAP1LC3BQ9GZQ8 125 aa0.53□□□□□ -2.32
PRPF39-208ENST00000554785 TMEM167BQ9NRX6 74 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms