RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LAMA5O15230 3695 aa10.95□□□□□ -0.66
CUX1-213ENST00000549414 CRYBG3Q68DQ2 2970 aa10.95□□□□□ -0.66
CUX1-213ENST00000549414 RELNP78509 3460 aa10.95□□□□□ -0.66
CUX1-213ENST00000549414 PRYO14603 147 aa10.94□□□□□ -0.66
CUX1-213ENST00000549414 DMDP11532 3685 aa10.94□□□□□ -0.66
CUX1-213ENST00000549414 Q6ZRP5 223 aa10.93□□□□□ -0.66
CUX1-213ENST00000549414 Q9BRP9 147 aa10.93□□□□□ -0.66
CUX1-213ENST00000549414 HRNRQ86YZ3 2850 aaPredicted RBP10.92□□□□□ -0.66
CUX1-213ENST00000549414 LINC00612Q8N6U2 182 aa10.92□□□□□ -0.66
CUX1-213ENST00000549414 ZNF706Q9Y5V0 76 aaPredicted RBP10.92□□□□□ -0.66
CUX1-213ENST00000549414 F8WDY8 70 aa10.92□□□□□ -0.66
CUX1-213ENST00000549414 K7EIL1 84 aa10.92□□□□□ -0.66
CUX1-213ENST00000549414 FAM104AQ969W3 186 aa10.91□□□□□ -0.66
CUX1-213ENST00000549414 TRAV7A0A075B6U4 112 aa10.9□□□□□ -0.66
CUX1-213ENST00000549414 CELSR2Q9HCU4 2923 aa10.9□□□□□ -0.66
CUX1-213ENST00000549414 NF1P21359 2839 aa10.9□□□□□ -0.67
CUX1-213ENST00000549414 SMCR5Q8TEV8 140 aa10.9□□□□□ -0.67
CUX1-213ENST00000549414 ELOF1P60002 83 aaKnown RBP10.89□□□□□ -0.67
CUX1-213ENST00000549414 FAM168BA1KXE4 195 aa10.88□□□□□ -0.67
CUX1-213ENST00000549414 VPREB1P12018 145 aa10.87□□□□□ -0.67
CUX1-213ENST00000549414 PRR34Q9NV39 138 aa10.87□□□□□ -0.67
CUX1-213ENST00000549414 APCP25054 2843 aa10.86□□□□□ -0.67
CUX1-213ENST00000549414 ST20-AS1Q8NBB2 130 aa10.86□□□□□ -0.67
CUX1-213ENST00000549414 CHTF8P0CG12 524 aa10.86□□□□□ -0.67
CUX1-213ENST00000549414 GVQW2A0A096LPI5 108 aaPredicted RBP10.84□□□□□ -0.67
CUX1-213ENST00000549414 Q6ZQT0 140 aa10.84□□□□□ -0.67
CUX1-213ENST00000549414 IGLV6-57P01721 117 aa10.84□□□□□ -0.67
CUX1-213ENST00000549414 SERTAD4-AS1Q5TG53 156 aa10.84□□□□□ -0.67
CUX1-213ENST00000549414 DNAH10OSP0CZ25 163 aa10.83□□□□□ -0.68
CUX1-213ENST00000549414 HIVEP1P15822 2718 aa10.83□□□□□ -0.68
CUX1-213ENST00000549414 ZFHX4Q86UP3 3567 aa10.83□□□□□ -0.68
CUX1-213ENST00000549414 PHF5AQ7RTV0 110 aaKnown RBP10.83□□□□□ -0.68
CUX1-213ENST00000549414 NBDYA0A0U1RRE5 68 aa10.82□□□□□ -0.68
CUX1-213ENST00000549414 FBN2P35556 2912 aa10.82□□□□□ -0.68
CUX1-213ENST00000549414 C15orf56Q8N910 161 aa10.82□□□□□ -0.68
CUX1-213ENST00000549414 BRK1Q8WUW1 75 aa10.82□□□□□ -0.68
CUX1-213ENST00000549414 LINC00208Q96KT6 92 aa10.82□□□□□ -0.68
CUX1-213ENST00000549414 DCHS2Q6V1P9 2916 aa10.81□□□□□ -0.68
CUX1-213ENST00000549414 C9orf129Q5T035 196 aaKnown RBP10.81□□□□□ -0.68
CUX1-213ENST00000549414 NDUFC1O43677 76 aa10.81□□□□□ -0.68
CUX1-213ENST00000549414 Q6ZRX8 168 aa10.81□□□□□ -0.68
CUX1-213ENST00000549414 CASC2Q6XLA1 102 aa10.8□□□□□ -0.68
CUX1-213ENST00000549414 TENM4Q6N022 2769 aa10.8□□□□□ -0.68
CUX1-213ENST00000549414 WWC2-AS2Q96NR7 200 aa10.8□□□□□ -0.68
CUX1-213ENST00000549414 IGHV6-1A0A0B4J1U7 121 aa10.77□□□□□ -0.68
CUX1-213ENST00000549414 SVIPQ8NHG7 77 aa10.77□□□□□ -0.69
CUX1-213ENST00000549414 KMT2BQ9UMN6 2715 aaPredicted RBP10.77□□□□□ -0.69
CUX1-213ENST00000549414 DMBT1Q9UGM3 2413 aaPredicted RBP10.76□□□□□ -0.69
CUX1-213ENST00000549414 CXCL6P80162 114 aa10.76□□□□□ -0.69
CUX1-213ENST00000549414 TMEM254Q8TBM7 123 aa10.76□□□□□ -0.69
CUX1-213ENST00000549414 TRBV7-6A0A0J9YX20 115 aa10.76□□□□□ -0.69
CUX1-213ENST00000549414 CASC10Q5T4H9 136 aa10.76□□□□□ -0.69
CUX1-213ENST00000549414 RETNLBQ9BQ08 111 aa10.73□□□□□ -0.69
CUX1-213ENST00000549414 LOC110117498A0A087WWA1 95 aa10.73□□□□□ -0.69
CUX1-213ENST00000549414 C16orf90A8MZG2 172 aa10.73□□□□□ -0.69
CUX1-213ENST00000549414 SMIM29Q86T20 159 aa10.73□□□□□ -0.69
CUX1-213ENST00000549414 LINC00476Q8WZB0 136 aa10.73□□□□□ -0.69
CUX1-213ENST00000549414 RTL8CO15255 209 aa10.71□□□□□ -0.69
CUX1-213ENST00000549414 LINC00528Q8N1L1 170 aa10.71□□□□□ -0.69
CUX1-213ENST00000549414 EPM2AB3EWF7 344 aa10.71□□□□□ -0.7
CUX1-213ENST00000549414 Q8NBF4 154 aa10.7□□□□□ -0.7
CUX1-213ENST00000549414 HCG22E2RYF7 251 aa10.69□□□□□ -0.7
CUX1-213ENST00000549414 PCOTHQ58A44 107 aa10.68□□□□□ -0.7
CUX1-213ENST00000549414 A0A0G2JQZ4 141 aa10.68□□□□□ -0.7
CUX1-213ENST00000549414 A0A1W2PNN7 141 aa10.68□□□□□ -0.7
CUX1-213ENST00000549414 ATP5EP56381 51 aaPredicted RBP10.67□□□□□ -0.7
CUX1-213ENST00000549414 NIPBLQ6KC79 2804 aaeCLIP10.67□□□□□ -0.7
CUX1-213ENST00000549414 MOBPQ13875 183 aa10.66□□□□□ -0.7
CUX1-213ENST00000549414 KCNQ1DNQ9H478 68 aa10.66□□□□□ -0.7
CUX1-213ENST00000549414 A0A0U1RQV1 116 aa10.66□□□□□ -0.7
CUX1-213ENST00000549414 TM2D3Q9BRN9 247 aa10.66□□□□□ -0.7
CUX1-213ENST00000549414 IGLV1-50A0A075B6I6 118 aa10.66□□□□□ -0.7
CUX1-213ENST00000549414 CRYGAP11844 174 aa10.65□□□□□ -0.7
CUX1-213ENST00000549414 SPACA4Q8TDM5 124 aa10.65□□□□□ -0.7
CUX1-213ENST00000549414 SPTSSBQ8NFR3 76 aa10.64□□□□□ -0.71
CUX1-213ENST00000549414 SERP1Q9Y6X1 66 aa10.63□□□□□ -0.71
CUX1-213ENST00000549414 RPL37AP61513 92 aaKnown RBP10.63□□□□□ -0.71
CUX1-213ENST00000549414 H0Y9P7 68 aa10.63□□□□□ -0.71
CUX1-213ENST00000549414 SMIM26A0A096LP01 95 aa10.62□□□□□ -0.71
CUX1-213ENST00000549414 SEC61GP60059 68 aa10.61□□□□□ -0.71
CUX1-213ENST00000549414 Q8N377 158 aa10.61□□□□□ -0.71
CUX1-213ENST00000549414 MXRA5Q9NR99 2828 aa10.6□□□□□ -0.71
CUX1-213ENST00000549414 ERC2-IT1O76042 136 aa10.57□□□□□ -0.72
CUX1-213ENST00000549414 Q8NDZ9 215 aa10.56□□□□□ -0.72
CUX1-213ENST00000549414 FLG2Q5D862 2391 aaPredicted RBP10.56□□□□□ -0.72
CUX1-213ENST00000549414 SMR3BP02814 79 aaPredicted RBP10.55□□□□□ -0.72
CUX1-213ENST00000549414 FAM229AH3BQW9 127 aa10.55□□□□□ -0.72
CUX1-213ENST00000549414 TRBV7-4A0A0J9YYF1 115 aa10.54□□□□□ -0.72
CUX1-213ENST00000549414 K7EQZ3 153 aa10.54□□□□□ -0.72
CUX1-213ENST00000549414 BCE1O60756 84 aa10.54□□□□□ -0.72
CUX1-213ENST00000549414 C1orf64Q8NEQ6 169 aa10.53□□□□□ -0.72
CUX1-213ENST00000549414 PSPHP1O15172 72 aa10.51□□□□□ -0.73
CUX1-213ENST00000549414 IGFL1Q6UW32 110 aa10.5□□□□□ -0.73
CUX1-213ENST00000549414 WIPF1O43516 503 aa10.5□□□□□ -0.73
CUX1-213ENST00000549414 TLX1NBP0CAT3 122 aa10.5□□□□□ -0.73
CUX1-213ENST00000549414 A6NED7 52 aa10.49□□□□□ -0.73
CUX1-213ENST00000549414 hDV103S1A0JD37 113 aa10.49□□□□□ -0.73
CUX1-213ENST00000549414 C9orf163Q8N9P6 203 aa10.49□□□□□ -0.73
CUX1-213ENST00000549414 A0A1B0GW54 56 aa10.48□□□□□ -0.73
CUX1-213ENST00000549414 SPINK1P00995 79 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 201.5 ms