RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PRYO14603 147 aa10.52□□□□□ -0.73
LIG1-204ENST00000542460 BCE1O60756 84 aa10.52□□□□□ -0.73
LIG1-204ENST00000542460 LINC00337Q8N6G1 96 aa10.52□□□□□ -0.73
LIG1-204ENST00000542460 IGLV7-43P04211 117 aa10.51□□□□□ -0.73
LIG1-204ENST00000542460 CBY1Q9Y3M2 126 aa10.51□□□□□ -0.73
LIG1-204ENST00000542460 CEND1Q8N111 149 aa10.5□□□□□ -0.73
LIG1-204ENST00000542460 TRAV13-2A0A0B4J235 113 aa10.49□□□□□ -0.73
LIG1-204ENST00000542460 TAX1BP3O14907 124 aa10.49□□□□□ -0.73
LIG1-204ENST00000542460 TRAV23DV6A0A075B6W5 121 aa10.48□□□□□ -0.73
LIG1-204ENST00000542460 SPRR1AP35321 89 aa10.48□□□□□ -0.73
LIG1-204ENST00000542460 ZNF861PO60384 105 aa10.46□□□□□ -0.74
LIG1-204ENST00000542460 INAFM2P0DMQ5 153 aa10.46□□□□□ -0.74
LIG1-204ENST00000542460 FXYD2P54710 66 aa10.46□□□□□ -0.74
LIG1-204ENST00000542460 SPINK6Q6UWN8 80 aa10.46□□□□□ -0.74
LIG1-204ENST00000542460 FAM19A1Q7Z5A9 133 aa10.46□□□□□ -0.74
LIG1-204ENST00000542460 TMEM238LA0A1B0GVL6 79 aa10.45□□□□□ -0.74
LIG1-204ENST00000542460 A6NJY4 79 aa10.45□□□□□ -0.74
LIG1-204ENST00000542460 ZNF73O43830 326 aaPredicted RBP10.45□□□□□ -0.74
LIG1-204ENST00000542460 RPL28P46779 137 aaKnown RBP10.45□□□□□ -0.74
LIG1-204ENST00000542460 UBE2AP49459 152 aa10.45□□□□□ -0.74
LIG1-204ENST00000542460 KRTAP4-16G5E9R7 235 aaPredicted RBP10.44□□□□□ -0.74
LIG1-204ENST00000542460 ETDCA0A1B0GVM5 59 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 CFC1BP0CG36 223 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 CFC1P0CG37 223 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 H0Y9J4 135 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 VAMP3Q15836 100 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 KRTAP13-1Q8IUC0 172 aa10.43□□□□□ -0.74
LIG1-204ENST00000542460 NHP2Q9NX24 153 aaKnown RBP10.43□□□□□ -0.74
LIG1-204ENST00000542460 PRLHP81277 87 aa10.42□□□□□ -0.74
LIG1-204ENST00000542460 RAB37Q96AX2 223 aa10.42□□□□□ -0.74
LIG1-204ENST00000542460 HERC1Q15751 4861 aa10.41□□□□□ -0.74
LIG1-204ENST00000542460 A0A0B4J2C4 111 aa10.41□□□□□ -0.74
LIG1-204ENST00000542460 K7ERJ3 54 aa10.41□□□□□ -0.74
LIG1-204ENST00000542460 DIRC1Q969H9 104 aa10.41□□□□□ -0.74
LIG1-204ENST00000542460 MYCBP2O75592 4640 aa10.41□□□□□ -0.74
LIG1-204ENST00000542460 C9orf118A6NHY6 69 aa10.4□□□□□ -0.74
LIG1-204ENST00000542460 B5MCH6 92 aa10.39□□□□□ -0.75
LIG1-204ENST00000542460 RPL13AP40429 203 aaKnown RBP10.39□□□□□ -0.75
LIG1-204ENST00000542460 C6orf99Q4VX62 202 aa10.38□□□□□ -0.75
LIG1-204ENST00000542460 SMIM11BQ8TCY0 68 aa10.38□□□□□ -0.75
LIG1-204ENST00000542460 H3BUT2 72 aa10.38□□□□□ -0.75
LIG1-204ENST00000542460 Q6ZRX8 168 aa10.38□□□□□ -0.75
LIG1-204ENST00000542460 NAA38Q9BRA0 125 aaKnown RBP10.37□□□□□ -0.75
LIG1-204ENST00000542460 TRBV7-6A0A0J9YX20 115 aa10.36□□□□□ -0.75
LIG1-204ENST00000542460 UBE2V1Q13404 147 aa10.36□□□□□ -0.75
LIG1-204ENST00000542460 HIGD2AQ9BW72 106 aa10.36□□□□□ -0.75
LIG1-204ENST00000542460 PRO1854Q9UHT4 67 aa10.36□□□□□ -0.75
LIG1-204ENST00000542460 COX7BP24311 80 aa10.34□□□□□ -0.75
LIG1-204ENST00000542460 ELOF1P60002 83 aaKnown RBP10.34□□□□□ -0.75
LIG1-204ENST00000542460 PKHD1L1Q86WI1 4243 aa10.34□□□□□ -0.75
LIG1-204ENST00000542460 A0A1B0GWB2 263 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 H7C2G1 150 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 A0A1W2PPM0 123 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 FABP2P12104 132 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 SMCR5Q8TEV8 140 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 Q9BRP9 147 aa10.33□□□□□ -0.76
LIG1-204ENST00000542460 FLG2Q5D862 2391 aaPredicted RBP10.32□□□□□ -0.76
LIG1-204ENST00000542460 DMBT1Q9UGM3 2413 aaPredicted RBP10.31□□□□□ -0.76
LIG1-204ENST00000542460 GTF2H5Q6ZYL4 71 aa10.31□□□□□ -0.76
LIG1-204ENST00000542460 DHRS4-AS1Q9P1J3 65 aa10.31□□□□□ -0.76
LIG1-204ENST00000542460 Q1RN00 199 aa10.3□□□□□ -0.76
LIG1-204ENST00000542460 K7EP34 96 aa10.29□□□□□ -0.76
LIG1-204ENST00000542460 SPCS1Q9Y6A9 102 aa10.28□□□□□ -0.76
LIG1-204ENST00000542460 ERC2-IT1O76042 136 aa10.28□□□□□ -0.76
LIG1-204ENST00000542460 OXTP01178 125 aa10.27□□□□□ -0.77
LIG1-204ENST00000542460 KRTAP1-4P0C5Y4 121 aa10.27□□□□□ -0.77
LIG1-204ENST00000542460 ZNF706Q9Y5V0 76 aaPredicted RBP10.27□□□□□ -0.77
LIG1-204ENST00000542460 LINC01600Q96MT4 127 aa10.25□□□□□ -0.77
LIG1-204ENST00000542460 SPRR4Q96PI1 79 aa10.25□□□□□ -0.77
LIG1-204ENST00000542460 KRTAP29-1A8MX34 341 aaPredicted RBP10.24□□□□□ -0.77
LIG1-204ENST00000542460 H0YGX0 51 aa10.23□□□□□ -0.77
LIG1-204ENST00000542460 SLC25A20O43772 301 aa10.23□□□□□ -0.77
LIG1-204ENST00000542460 TSPAN13O95857 204 aa10.23□□□□□ -0.77
LIG1-204ENST00000542460 LINC00575Q6W349 94 aa10.23□□□□□ -0.77
LIG1-204ENST00000542460 J3QL48 77 aa10.22□□□□□ -0.77
LIG1-204ENST00000542460 TRIAP1O43715 76 aa10.21□□□□□ -0.78
LIG1-204ENST00000542460 PSMB2P49721 201 aa10.21□□□□□ -0.78
LIG1-204ENST00000542460 LYRM7Q5U5X0 104 aa10.21□□□□□ -0.78
LIG1-204ENST00000542460 ANAPC11Q9NYG5 84 aa10.21□□□□□ -0.78
LIG1-204ENST00000542460 FAM229BQ4G0N7 80 aa10.2□□□□□ -0.78
LIG1-204ENST00000542460 GAGE2AQ6NT46 116 aa10.2□□□□□ -0.78
LIG1-204ENST00000542460 ST20-AS1Q8NBB2 130 aa10.2□□□□□ -0.78
LIG1-204ENST00000542460 LRP1Q07954 4544 aaKnown RBP10.19□□□□□ -0.78
LIG1-204ENST00000542460 hADV29S1A0JD25 119 aa10.19□□□□□ -0.78
LIG1-204ENST00000542460 COX6CP09669 75 aa10.19□□□□□ -0.78
LIG1-204ENST00000542460 CRYGAP11844 174 aa10.18□□□□□ -0.78
LIG1-204ENST00000542460 LINC00483Q53H64 154 aa10.18□□□□□ -0.78
LIG1-204ENST00000542460 PRR26Q8N8Z3 221 aa10.18□□□□□ -0.78
LIG1-204ENST00000542460 FAT3Q8TDW7 4589 aa10.18□□□□□ -0.78
LIG1-204ENST00000542460 SNCGO76070 127 aa10.17□□□□□ -0.78
LIG1-204ENST00000542460 A0A087X002 238 aa10.16□□□□□ -0.78
LIG1-204ENST00000542460 KRTAP10-8P60410 259 aa10.16□□□□□ -0.78
LIG1-204ENST00000542460 MT1HL1P0DM35 61 aa10.14□□□□□ -0.79
LIG1-204ENST00000542460 SCGB1C2P0DMR2 95 aa10.14□□□□□ -0.79
LIG1-204ENST00000542460 SPRR1BP22528 89 aa10.14□□□□□ -0.79
LIG1-204ENST00000542460 DEFB105AQ8NG35 78 aa10.14□□□□□ -0.79
LIG1-204ENST00000542460 FAM218AQ96MZ4 157 aa10.14□□□□□ -0.79
LIG1-204ENST00000542460 A0A1B0GX51 115 aa10.13□□□□□ -0.79
LIG1-204ENST00000542460 Q6ZQY7 126 aa10.13□□□□□ -0.79
LIG1-204ENST00000542460 IGLV5-48A0A075B6I7 105 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 1819.4 ms