RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CDIP1Q9H305 208 aa9.26□□□□□ -0.93
USP3-204ENST00000540797 BPTFQ12830 3046 aa9.26□□□□□ -0.93
USP3-204ENST00000540797 ZNF861PO60384 105 aa9.25□□□□□ -0.93
USP3-204ENST00000540797 TRBV7-4A0A0J9YYF1 115 aa9.25□□□□□ -0.93
USP3-204ENST00000540797 Q96NJ1 140 aa9.25□□□□□ -0.93
USP3-204ENST00000540797 PRO0461Q9UI25 63 aa9.25□□□□□ -0.93
USP3-204ENST00000540797 LINC00528Q8N1L1 170 aa9.24□□□□□ -0.93
USP3-204ENST00000540797 CENPEQ02224 2701 aa9.24□□□□□ -0.93
USP3-204ENST00000540797 A0A0U1RQV1 116 aa9.24□□□□□ -0.93
USP3-204ENST00000540797 TLX1NBP0CAT3 122 aa9.24□□□□□ -0.93
USP3-204ENST00000540797 CASC10Q5T4H9 136 aa9.24□□□□□ -0.93
USP3-204ENST00000540797 PCNTO95613 3336 aa9.23□□□□□ -0.93
USP3-204ENST00000540797 ZNF575Q86XF7 245 aa9.23□□□□□ -0.93
USP3-204ENST00000540797 ATP11AUNQ6ZP68 121 aa9.22□□□□□ -0.93
USP3-204ENST00000540797 EIF4EBP3O60516 100 aaPredicted RBP9.21□□□□□ -0.94
USP3-204ENST00000540797 ZNF292O60281 2723 aa9.21□□□□□ -0.94
USP3-204ENST00000540797 LINC00304Q8N9R0 145 aa9.2□□□□□ -0.94
USP3-204ENST00000540797 PLA2G2DQ9UNK4 145 aa9.2□□□□□ -0.94
USP3-204ENST00000540797 CNBPP62633 177 aaKnown RBP9.19□□□□□ -0.94
USP3-204ENST00000540797 SSBP3-AS1Q7Z2R9 100 aa9.18□□□□□ -0.94
USP3-204ENST00000540797 A0A1W2PNN7 141 aa9.18□□□□□ -0.94
USP3-204ENST00000540797 C8orf87E5RJ46 101 aa9.18□□□□□ -0.94
USP3-204ENST00000540797 TRANK1O15050 2925 aa9.18□□□□□ -0.94
USP3-204ENST00000540797 A8MWP4 228 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 SPAG11AQ6PDA7 123 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 IGLV7-43P04211 117 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 IGFL1Q6UW32 110 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 TRAV22A0A0B4J277 110 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 WIPF1O43516 503 aa9.16□□□□□ -0.94
USP3-204ENST00000540797 PSORS1C2Q9UIG4 136 aa9.15□□□□□ -0.94
USP3-204ENST00000540797 ACYP2P14621 99 aa9.15□□□□□ -0.94
USP3-204ENST00000540797 LAMA3Q16787 3333 aa9.14□□□□□ -0.95
USP3-204ENST00000540797 PSPHP1O15172 72 aa9.13□□□□□ -0.95
USP3-204ENST00000540797 H3BPC8 53 aa9.13□□□□□ -0.95
USP3-204ENST00000540797 ANAPC11Q9NYG5 84 aa9.13□□□□□ -0.95
USP3-204ENST00000540797 Q8N377 158 aa9.12□□□□□ -0.95
USP3-204ENST00000540797 TNP2Q05952 138 aa9.12□□□□□ -0.95
USP3-204ENST00000540797 MRPL34Q9BQ48 92 aaKnown RBP9.11□□□□□ -0.95
USP3-204ENST00000540797 K7EQZ3 153 aa9.11□□□□□ -0.95
USP3-204ENST00000540797 CR1P17927 2039 aa9.1□□□□□ -0.95
USP3-204ENST00000540797 MKI67P46013 3256 aaKnown RBP9.1□□□□□ -0.95
USP3-204ENST00000540797 DSCR10P59022 87 aa9.08□□□□□ -0.96
USP3-204ENST00000540797 MGAQ8IWI9 3026 aa9.08□□□□□ -0.96
USP3-204ENST00000540797 TEP1Q99973 2627 aaKnown RBP9.07□□□□□ -0.96
USP3-204ENST00000540797 A0A0G2JQZ4 141 aa9.07□□□□□ -0.96
USP3-204ENST00000540797 LOC101927531A0A1B0GV80 90 aa9.07□□□□□ -0.96
USP3-204ENST00000540797 C9orf92A6NGG3 77 aa9.06□□□□□ -0.96
USP3-204ENST00000540797 SPRR4Q96PI1 79 aa9.06□□□□□ -0.96
USP3-204ENST00000540797 A0A1B0GU69 56 aa9.06□□□□□ -0.96
USP3-204ENST00000540797 COX6B2Q6YFQ2 88 aa9.06□□□□□ -0.96
USP3-204ENST00000540797 OBSCN-AS1Q96MR7 158 aa9.05□□□□□ -0.96
USP3-204ENST00000540797 ERC2-IT1O76042 136 aa9.04□□□□□ -0.96
USP3-204ENST00000540797 C8orf17Q9NRJ1 99 aa9.04□□□□□ -0.96
USP3-204ENST00000540797 PRR15Q8IV56 129 aa9.02□□□□□ -0.96
USP3-204ENST00000540797 A0A1B0GVX0 72 aa9.02□□□□□ -0.97
USP3-204ENST00000540797 IGLV5-37A0A075B6J1 123 aa9.01□□□□□ -0.97
USP3-204ENST00000540797 PMAIP1Q13794 54 aa9□□□□□ -0.97
USP3-204ENST00000540797 BRCA2P51587 3418 aa8.99□□□□□ -0.97
USP3-204ENST00000540797 SETXQ7Z333 2677 aaKnown RBP8.99□□□□□ -0.97
USP3-204ENST00000540797 AKAP13Q12802 2813 aa8.97□□□□□ -0.97
USP3-204ENST00000540797 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.96□□□□□ -0.97
USP3-204ENST00000540797 TEX15Q9BXT5 2789 aa8.95□□□□□ -0.98
USP3-204ENST00000540797 C1orf195Q5TG92 126 aa8.94□□□□□ -0.98
USP3-204ENST00000540797 IGSF10Q6WRI0 2623 aa8.93□□□□□ -0.98
USP3-204ENST00000540797 UNC79Q9P2D8 2635 aa8.93□□□□□ -0.98
USP3-204ENST00000540797 PRUNE2Q8WUY3 3088 aa8.93□□□□□ -0.98
USP3-204ENST00000540797 DSPP15924 2871 aaKnown RBP8.92□□□□□ -0.98
USP3-204ENST00000540797 COL6A5A8TX70 2615 aa8.92□□□□□ -0.98
USP3-204ENST00000540797 BAHCC1Q9P281 2608 aa8.92□□□□□ -0.98
USP3-204ENST00000540797 A0A1W2PNM2 257 aa8.92□□□□□ -0.98
USP3-204ENST00000540797 STAB1Q9NY15 2570 aa8.92□□□□□ -0.98
USP3-204ENST00000540797 WDFY4Q6ZS81 3184 aa8.9□□□□□ -0.98
USP3-204ENST00000540797 IGLV8-61A0A075B6I0 122 aa8.89□□□□□ -0.99
USP3-204ENST00000540797 FAM104AQ969W3 186 aa8.89□□□□□ -0.99
USP3-204ENST00000540797 PRR26Q8N8Z3 221 aa8.86□□□□□ -0.99
USP3-204ENST00000540797 CFAP54Q96N23 3096 aa8.86□□□□□ -0.99
USP3-204ENST00000540797 A0A0C4DFX4 3053 aa8.86□□□□□ -0.99
USP3-204ENST00000540797 IGLV5-48A0A075B6I7 105 aa8.85□□□□□ -0.99
USP3-204ENST00000540797 CHD6Q8TD26 2715 aa8.85□□□□□ -0.99
USP3-204ENST00000540797 RBM12B-AS1Q9P1G2 102 aa8.84□□□□□ -0.99
USP3-204ENST00000540797 PLAC8Q9NZF1 115 aa8.84□□□□□ -0.99
USP3-204ENST00000540797 COA5Q86WW8 74 aa8.83□□□□□ -1
USP3-204ENST00000540797 CD164Q04900 197 aa8.82□□□□□ -1
USP3-204ENST00000540797 IGLV7-46A0A075B6I9 117 aa8.79□□□□□ -1
USP3-204ENST00000540797 KRTAP1-5Q9BYS1 174 aa8.79□□□□□ -1
USP3-204ENST00000540797 LCE6AA0A183 80 aa8.78□□□□□ -1
USP3-204ENST00000540797 FAM229BQ4G0N7 80 aa8.78□□□□□ -1
USP3-204ENST00000540797 LINC01600Q96MT4 127 aa8.78□□□□□ -1
USP3-204ENST00000540797 RPS28P62857 69 aaKnown RBP8.77□□□□□ -1
USP3-204ENST00000540797 LAMA2P24043 3122 aaKnown RBP8.76□□□□□ -1.01
USP3-204ENST00000540797 UNC80Q8N2C7 3258 aa8.76□□□□□ -1.01
USP3-204ENST00000540797 NOTCH1P46531 2555 aa8.75□□□□□ -1.01
USP3-204ENST00000540797 Q6ZSA8 131 aa8.74□□□□□ -1.01
USP3-204ENST00000540797 TRIOO75962 3097 aa8.72□□□□□ -1.01
USP3-204ENST00000540797 KLKP1Q107X0 134 aa8.72□□□□□ -1.01
USP3-204ENST00000540797 XIRP2A4UGR9 3374 aa8.71□□□□□ -1.02
USP3-204ENST00000540797 Q8N1X5 172 aa8.7□□□□□ -1.02
USP3-204ENST00000540797 C4orf26Q17RF5 130 aa8.7□□□□□ -1.02
USP3-204ENST00000540797 Q8NDZ9 215 aa8.7□□□□□ -1.02
USP3-204ENST00000540797 SPRR1AP35321 89 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms