RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 KCNQ1DNQ9H478 68 aa11.74□□□□□ -0.53
TNFRSF1A-213ENST00000540022 PRO1854Q9UHT4 67 aa11.74□□□□□ -0.53
TNFRSF1A-213ENST00000540022 TRAV23DV6A0A075B6W5 121 aa11.71□□□□□ -0.53
TNFRSF1A-213ENST00000540022 H7C2G1 150 aa11.71□□□□□ -0.53
TNFRSF1A-213ENST00000540022 PRYO14603 147 aa11.7□□□□□ -0.54
TNFRSF1A-213ENST00000540022 SMIM11BQ8TCY0 68 aa11.7□□□□□ -0.54
TNFRSF1A-213ENST00000540022 PSORS1C2Q9UIG4 136 aa11.7□□□□□ -0.54
TNFRSF1A-213ENST00000540022 REG3GQ6UW15 175 aa11.69□□□□□ -0.54
TNFRSF1A-213ENST00000540022 ZNF73O43830 326 aaPredicted RBP11.68□□□□□ -0.54
TNFRSF1A-213ENST00000540022 SPRR1AP35321 89 aa11.68□□□□□ -0.54
TNFRSF1A-213ENST00000540022 LINC00528Q8N1L1 170 aa11.68□□□□□ -0.54
TNFRSF1A-213ENST00000540022 Q5VSD8 79 aa11.67□□□□□ -0.54
TNFRSF1A-213ENST00000540022 CBY1Q9Y3M2 126 aa11.67□□□□□ -0.54
TNFRSF1A-213ENST00000540022 Q1RN00 199 aa11.66□□□□□ -0.54
TNFRSF1A-213ENST00000540022 KRTAP4-16G5E9R7 235 aaPredicted RBP11.65□□□□□ -0.54
TNFRSF1A-213ENST00000540022 TSPAN13O95857 204 aa11.65□□□□□ -0.54
TNFRSF1A-213ENST00000540022 RPL28P46779 137 aaKnown RBP11.65□□□□□ -0.54
TNFRSF1A-213ENST00000540022 C6orf99Q4VX62 202 aa11.65□□□□□ -0.54
TNFRSF1A-213ENST00000540022 C1orf137Q5JT78 98 aa11.65□□□□□ -0.55
TNFRSF1A-213ENST00000540022 DIRC1Q969H9 104 aa11.65□□□□□ -0.55
TNFRSF1A-213ENST00000540022 BCE1O60756 84 aa11.63□□□□□ -0.55
TNFRSF1A-213ENST00000540022 SRRM2Q9UQ35 2752 aaKnown RBP11.63□□□□□ -0.55
TNFRSF1A-213ENST00000540022 FLG2Q5D862 2391 aaPredicted RBP11.62□□□□□ -0.55
TNFRSF1A-213ENST00000540022 RPL37AP61513 92 aaKnown RBP11.61□□□□□ -0.55
TNFRSF1A-213ENST00000540022 FAM19A1Q7Z5A9 133 aa11.61□□□□□ -0.55
TNFRSF1A-213ENST00000540022 ETDCA0A1B0GVM5 59 aa11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 TAX1BP3O14907 124 aa11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 B5MCH6 92 aa11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 TRIAP1O43715 76 aa11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 PRLHP81277 87 aa11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 NAA38Q9BRA0 125 aaKnown RBP11.6□□□□□ -0.55
TNFRSF1A-213ENST00000540022 MYCBP2O75592 4640 aa11.59□□□□□ -0.55
TNFRSF1A-213ENST00000540022 COL5A1-AS1Q5SY13 56 aa11.59□□□□□ -0.55
TNFRSF1A-213ENST00000540022 FAM229AH3BQW9 127 aa11.58□□□□□ -0.56
TNFRSF1A-213ENST00000540022 IGLV7-43P04211 117 aa11.58□□□□□ -0.56
TNFRSF1A-213ENST00000540022 PSMB2P49721 201 aa11.58□□□□□ -0.56
TNFRSF1A-213ENST00000540022 ELOF1P60002 83 aaKnown RBP11.58□□□□□ -0.56
TNFRSF1A-213ENST00000540022 KRTAP10-4P60372 401 aaPredicted RBP11.58□□□□□ -0.56
TNFRSF1A-213ENST00000540022 TRBV7-6A0A0J9YX20 115 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 INAFM2P0DMQ5 153 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 COX7BP24311 80 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 UBE2AP49459 152 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 Q6ZRX8 168 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 KRTAP13-1Q8IUC0 172 aa11.57□□□□□ -0.56
TNFRSF1A-213ENST00000540022 VAMP3Q15836 100 aa11.55□□□□□ -0.56
TNFRSF1A-213ENST00000540022 C9orf118A6NHY6 69 aa11.54□□□□□ -0.56
TNFRSF1A-213ENST00000540022 H0Y9J4 135 aa11.54□□□□□ -0.56
TNFRSF1A-213ENST00000540022 H3BUT2 72 aa11.54□□□□□ -0.56
TNFRSF1A-213ENST00000540022 ZNF861PO60384 105 aa11.54□□□□□ -0.56
TNFRSF1A-213ENST00000540022 Q9BRP9 147 aa11.54□□□□□ -0.56
TNFRSF1A-213ENST00000540022 COX6CP09669 75 aa11.52□□□□□ -0.57
TNFRSF1A-213ENST00000540022 H0YGX0 51 aa11.51□□□□□ -0.57
TNFRSF1A-213ENST00000540022 PLA2G1BP04054 148 aaKnown RBP11.51□□□□□ -0.57
TNFRSF1A-213ENST00000540022 SMCR5Q8TEV8 140 aa11.51□□□□□ -0.57
TNFRSF1A-213ENST00000540022 HIGD2AQ9BW72 106 aa11.51□□□□□ -0.57
TNFRSF1A-213ENST00000540022 HERC1Q15751 4861 aa11.51□□□□□ -0.57
TNFRSF1A-213ENST00000540022 SCGB1C2P0DMR2 95 aa11.5□□□□□ -0.57
TNFRSF1A-213ENST00000540022 LINC00575Q6W349 94 aa11.5□□□□□ -0.57
TNFRSF1A-213ENST00000540022 FAM218AQ96MZ4 157 aa11.5□□□□□ -0.57
TNFRSF1A-213ENST00000540022 CLEC2BQ92478 149 aa11.5□□□□□ -0.57
TNFRSF1A-213ENST00000540022 DMBT1Q9UGM3 2413 aaPredicted RBP11.5□□□□□ -0.57
TNFRSF1A-213ENST00000540022 ERC2-IT1O76042 136 aa11.49□□□□□ -0.57
TNFRSF1A-213ENST00000540022 DHRS4-AS1Q9P1J3 65 aa11.47□□□□□ -0.57
TNFRSF1A-213ENST00000540022 A0A1W2PPM0 123 aa11.46□□□□□ -0.57
TNFRSF1A-213ENST00000540022 hADV29S1A0JD25 119 aa11.45□□□□□ -0.58
TNFRSF1A-213ENST00000540022 SLC25A20O43772 301 aa11.45□□□□□ -0.58
TNFRSF1A-213ENST00000540022 PKHD1L1Q86WI1 4243 aa11.44□□□□□ -0.58
TNFRSF1A-213ENST00000540022 LYRM7Q5U5X0 104 aa11.43□□□□□ -0.58
TNFRSF1A-213ENST00000540022 TCL1BO95988 128 aa11.42□□□□□ -0.58
TNFRSF1A-213ENST00000540022 SPINK6Q6UWN8 80 aa11.42□□□□□ -0.58
TNFRSF1A-213ENST00000540022 LST1O00453 97 aa11.41□□□□□ -0.58
TNFRSF1A-213ENST00000540022 FABP2P12104 132 aa11.41□□□□□ -0.58
TNFRSF1A-213ENST00000540022 LRP1Q07954 4544 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-213ENST00000540022 A0A1B0GX51 115 aa11.4□□□□□ -0.58
TNFRSF1A-213ENST00000540022 ST20-AS1Q8NBB2 130 aa11.4□□□□□ -0.58
TNFRSF1A-213ENST00000540022 FAT3Q8TDW7 4589 aa11.39□□□□□ -0.59
TNFRSF1A-213ENST00000540022 Q6ZQY7 126 aa11.39□□□□□ -0.59
TNFRSF1A-213ENST00000540022 TRBV20-1A0A075B6N2 111 aa11.37□□□□□ -0.59
TNFRSF1A-213ENST00000540022 SNCGO76070 127 aa11.37□□□□□ -0.59
TNFRSF1A-213ENST00000540022 ATXN8Q156A1 80 aa11.37□□□□□ -0.59
TNFRSF1A-213ENST00000540022 TRACP01848 142 aa11.36□□□□□ -0.59
TNFRSF1A-213ENST00000540022 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.36□□□□□ -0.59
TNFRSF1A-213ENST00000540022 SPRR4Q96PI1 79 aa11.36□□□□□ -0.59
TNFRSF1A-213ENST00000540022 SPCS1Q9Y6A9 102 aa11.35□□□□□ -0.59
TNFRSF1A-213ENST00000540022 LINC01547P58512 204 aaPredicted RBP11.35□□□□□ -0.59
TNFRSF1A-213ENST00000540022 DNAL4O96015 105 aa11.34□□□□□ -0.59
TNFRSF1A-213ENST00000540022 GAGE2AQ6NT46 116 aa11.34□□□□□ -0.59
TNFRSF1A-213ENST00000540022 DEFB105AQ8NG35 78 aa11.34□□□□□ -0.59
TNFRSF1A-213ENST00000540022 ZNF706Q9Y5V0 76 aaPredicted RBP11.34□□□□□ -0.59
TNFRSF1A-213ENST00000540022 IGLV5-48A0A075B6I7 105 aa11.32□□□□□ -0.6
TNFRSF1A-213ENST00000540022 KRTAP1-4P0C5Y4 121 aa11.32□□□□□ -0.6
TNFRSF1A-213ENST00000540022 ANAPC11Q9NYG5 84 aa11.32□□□□□ -0.6
TNFRSF1A-213ENST00000540022 H3BMG7 143 aa11.3□□□□□ -0.6
TNFRSF1A-213ENST00000540022 Q8N377 158 aa11.3□□□□□ -0.6
TNFRSF1A-213ENST00000540022 KRTAP29-1A8MX34 341 aaPredicted RBP11.3□□□□□ -0.6
TNFRSF1A-213ENST00000540022 K7EP34 96 aa11.3□□□□□ -0.6
TNFRSF1A-213ENST00000540022 LINC00483Q53H64 154 aa11.3□□□□□ -0.6
TNFRSF1A-213ENST00000540022 TEX49A0A1B0GTD5 131 aa11.29□□□□□ -0.6
TNFRSF1A-213ENST00000540022 SPRR1BP22528 89 aa11.29□□□□□ -0.6
TNFRSF1A-213ENST00000540022 OCIAD2Q56VL3 154 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms