RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 C15orf56Q8N910 161 aa7.41□□□□□ -1.22
SYNE1-237ENST00000539504 RPL37AP8A6NKH3 93 aa7.41□□□□□ -1.22
SYNE1-237ENST00000539504 HIGD2AQ9BW72 106 aa7.41□□□□□ -1.22
SYNE1-237ENST00000539504 FAM30AQ9NZY2 134 aa7.4□□□□□ -1.22
SYNE1-237ENST00000539504 MRAPQ8TCY5 172 aa7.4□□□□□ -1.22
SYNE1-237ENST00000539504 Q6ZTC4 211 aa7.4□□□□□ -1.23
SYNE1-237ENST00000539504 ANK3Q12955 4377 aaKnown RBP7.4□□□□□ -1.23
SYNE1-237ENST00000539504 BRK1Q8WUW1 75 aa7.39□□□□□ -1.23
SYNE1-237ENST00000539504 PRO0628Q9UI54 55 aa7.39□□□□□ -1.23
SYNE1-237ENST00000539504 C7orf33Q8WU49 177 aa7.39□□□□□ -1.23
SYNE1-237ENST00000539504 F8P00451 2351 aa7.39□□□□□ -1.23
SYNE1-237ENST00000539504 Q8N377 158 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 INAFM1C9JVW0 142 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 SERTAD4-AS1Q5TG53 156 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 TEP1Q99973 2627 aaKnown RBP7.38□□□□□ -1.23
SYNE1-237ENST00000539504 ETDCA0A1B0GVM5 59 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 ESRGQ1W209 222 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 OCR1Q9BZK8 76 aa7.38□□□□□ -1.23
SYNE1-237ENST00000539504 SMIM29Q86T20 159 aa7.37□□□□□ -1.23
SYNE1-237ENST00000539504 PKIGQ9Y2B9 76 aa7.37□□□□□ -1.23
SYNE1-237ENST00000539504 ERC2-IT1O76042 136 aa7.37□□□□□ -1.23
SYNE1-237ENST00000539504 KRTAP26-1Q6PEX3 210 aa7.37□□□□□ -1.23
SYNE1-237ENST00000539504 HELZ2Q9BYK8 2649 aaKnown RBP7.37□□□□□ -1.23
SYNE1-237ENST00000539504 PDZD2O15018 2839 aa7.36□□□□□ -1.23
SYNE1-237ENST00000539504 HECTD1Q9ULT8 2610 aa7.36□□□□□ -1.23
SYNE1-237ENST00000539504 HIVEP1P15822 2718 aa7.36□□□□□ -1.23
SYNE1-237ENST00000539504 A0A0U1RQV1 116 aa7.36□□□□□ -1.23
SYNE1-237ENST00000539504 C1orf137Q5JT78 98 aa7.36□□□□□ -1.23
SYNE1-237ENST00000539504 FAM229BQ4G0N7 80 aa7.35□□□□□ -1.23
SYNE1-237ENST00000539504 KCNQ1DNQ9H478 68 aa7.35□□□□□ -1.23
SYNE1-237ENST00000539504 TENM1Q9UKZ4 2725 aa7.35□□□□□ -1.23
SYNE1-237ENST00000539504 ST20-AS1Q8NBB2 130 aa7.34□□□□□ -1.23
SYNE1-237ENST00000539504 UBE2BP63146 152 aa7.34□□□□□ -1.24
SYNE1-237ENST00000539504 DHRS4-AS1Q9P1J3 65 aa7.34□□□□□ -1.24
SYNE1-237ENST00000539504 TENM4Q6N022 2769 aa7.34□□□□□ -1.24
SYNE1-237ENST00000539504 LRCOL1A6NCL2 159 aa7.33□□□□□ -1.24
SYNE1-237ENST00000539504 A0A1W2PNM2 257 aa7.33□□□□□ -1.24
SYNE1-237ENST00000539504 OXLD1Q5BKU9 147 aa7.33□□□□□ -1.24
SYNE1-237ENST00000539504 FAM168BA1KXE4 195 aa7.33□□□□□ -1.24
SYNE1-237ENST00000539504 IGLV5-48A0A075B6I7 105 aa7.32□□□□□ -1.24
SYNE1-237ENST00000539504 DEFB131BA0A096LNP1 70 aa7.32□□□□□ -1.24
SYNE1-237ENST00000539504 Q6ZRX8 168 aa7.32□□□□□ -1.24
SYNE1-237ENST00000539504 H3BNG1 76 aa7.3□□□□□ -1.24
SYNE1-237ENST00000539504 PRR4Q16378 134 aa7.3□□□□□ -1.24
SYNE1-237ENST00000539504 LINC01556Q5JQF7 62 aa7.3□□□□□ -1.24
SYNE1-237ENST00000539504 Q9BRP9 147 aa7.3□□□□□ -1.24
SYNE1-237ENST00000539504 J3QKU1 62 aa7.3□□□□□ -1.24
SYNE1-237ENST00000539504 PRB2P02812 416 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-237ENST00000539504 Q8NBF4 154 aa7.29□□□□□ -1.24
SYNE1-237ENST00000539504 PKD1L1Q8TDX9 2849 aa7.28□□□□□ -1.24
SYNE1-237ENST00000539504 K7EQZ3 153 aa7.28□□□□□ -1.24
SYNE1-237ENST00000539504 DEFB116Q30KQ4 102 aa7.28□□□□□ -1.24
SYNE1-237ENST00000539504 C11orf45Q8TAV5 145 aa7.28□□□□□ -1.24
SYNE1-237ENST00000539504 TRRAPQ9Y4A5 3859 aa7.27□□□□□ -1.25
SYNE1-237ENST00000539504 A0A0G2JQZ4 141 aa7.27□□□□□ -1.25
SYNE1-237ENST00000539504 A0A1W2PNN7 141 aa7.27□□□□□ -1.25
SYNE1-237ENST00000539504 F8WDY8 70 aa7.27□□□□□ -1.25
SYNE1-237ENST00000539504 IGLV1-50A0A075B6I6 118 aa7.26□□□□□ -1.25
SYNE1-237ENST00000539504 CASC10Q5T4H9 136 aa7.25□□□□□ -1.25
SYNE1-237ENST00000539504 DSCR10P59022 87 aa7.25□□□□□ -1.25
SYNE1-237ENST00000539504 WFDC13Q8IUB5 93 aa7.25□□□□□ -1.25
SYNE1-237ENST00000539504 MRPL55Q7Z7F7 128 aaKnown RBP7.24□□□□□ -1.25
SYNE1-237ENST00000539504 NSD1Q96L73 2696 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-237ENST00000539504 A0A1B0GW54 56 aa7.24□□□□□ -1.25
SYNE1-237ENST00000539504 BAHCC1Q9P281 2608 aa7.23□□□□□ -1.25
SYNE1-237ENST00000539504 KRTAP10-11P60412 298 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 TNP2Q05952 138 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 HCG22E2RYF7 251 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 C1orf64Q8NEQ6 169 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 LINC00476Q8WZB0 136 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 PSCAO43653 123 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 OTOGQ6ZRI0 2925 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 TENM3Q9P273 2699 aa7.22□□□□□ -1.25
SYNE1-237ENST00000539504 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-237ENST00000539504 KRTAP4-16G5E9R7 235 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-237ENST00000539504 IGKV2-24A0A0C4DH68 120 aa7.21□□□□□ -1.26
SYNE1-237ENST00000539504 hDV103S1A0JD37 113 aa7.21□□□□□ -1.26
SYNE1-237ENST00000539504 TLX1NBP0CAT3 122 aa7.21□□□□□ -1.26
SYNE1-237ENST00000539504 REG3GQ6UW15 175 aa7.21□□□□□ -1.26
SYNE1-237ENST00000539504 SPRR4Q96PI1 79 aa7.21□□□□□ -1.26
SYNE1-237ENST00000539504 DNAH10OSP0CZ25 163 aa7.2□□□□□ -1.26
SYNE1-237ENST00000539504 C1orf195Q5TG92 126 aa7.2□□□□□ -1.26
SYNE1-237ENST00000539504 PLA2G2DQ9UNK4 145 aa7.2□□□□□ -1.26
SYNE1-237ENST00000539504 SPRR1AP35321 89 aa7.2□□□□□ -1.26
SYNE1-237ENST00000539504 A0A087WSZ3 146 aa7.2□□□□□ -1.26
SYNE1-237ENST00000539504 PSPHP1O15172 72 aa7.19□□□□□ -1.26
SYNE1-237ENST00000539504 PRLHP81277 87 aa7.19□□□□□ -1.26
SYNE1-237ENST00000539504 MP68P56378 58 aa7.19□□□□□ -1.26
SYNE1-237ENST00000539504 FLNBO75369 2602 aaKnown RBP7.19□□□□□ -1.26
SYNE1-237ENST00000539504 KRTAP7-1Q8IUC3 87 aa7.18□□□□□ -1.26
SYNE1-237ENST00000539504 LINC00588Q9Y4M8 146 aa7.18□□□□□ -1.26
SYNE1-237ENST00000539504 IGLV5-37A0A075B6J1 123 aa7.17□□□□□ -1.26
SYNE1-237ENST00000539504 RPL37AP61513 92 aaKnown RBP7.17□□□□□ -1.26
SYNE1-237ENST00000539504 IGFL1Q6UW32 110 aa7.17□□□□□ -1.26
SYNE1-237ENST00000539504 LINC00208Q96KT6 92 aa7.17□□□□□ -1.26
SYNE1-237ENST00000539504 NOTCH1P46531 2555 aa7.17□□□□□ -1.26
SYNE1-237ENST00000539504 MAST4O15021 2626 aa7.17□□□□□ -1.26
SYNE1-237ENST00000539504 LCE6AA0A183 80 aa7.15□□□□□ -1.26
SYNE1-237ENST00000539504 ZCCHC13Q8WW36 166 aaKnown RBP7.15□□□□□ -1.26
SYNE1-237ENST00000539504 UBE2AP49459 152 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms