RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MRPL54Q6P161 138 aaKnown RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 FP248Q71RG6 208 aaPredicted RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 COMMD6Q7Z4G1 85 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 ARL17AQ8IVW1 177 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 Q8TAT8 98 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 SPTSSAQ969W0 71 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 LINC00526Q96FQ7 95 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 LINC01600Q96MT4 127 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 SEC11CQ9BY50 192 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 KRTAP2-4Q9BYR9 128 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 MED9Q9NWA0 146 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 TMEM242Q9NWH2 141 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
CD44-233ENST00000531141 A0A0J9YY99 117 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 OOSP1A8MZH6 123 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 F8W1H4 67 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 G3V318 75 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 H3BRM9 83 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 M0R129 80 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 TFF1P04155 84 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 IL5P05113 134 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 HMGN2P05204 90 aaKnown RBP0.91□□□□□ -2.26
CD44-233ENST00000531141 GYPBP06028 91 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 IFI6P09912 130 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 LINC00032P0C843 101 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 RNASE3P12724 160 aaKnown RBP0.91□□□□□ -2.26
CD44-233ENST00000531141 CATR1Q13166 79 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 RHOHQ15669 191 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 ZCCHC23Q6ZST2 131 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 SVBPQ8N300 66 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 C5orf17Q8NAS9 161 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 GAFA1Q96PS6 74 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 AQP10Q96PS8 301 aa0.91□□□□□ -2.26
CD44-233ENST00000531141 MRPL57Q9BQC6 102 aaKnown RBP0.91□□□□□ -2.26
CD44-233ENST00000531141 TRBV6-8A0A0A6YYG3 113 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 TRBV6-4A0A1B0GX49 114 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 CCL25O15444 150 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 NUPR1O60356 82 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 SNCGO76070 127 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 IFITM1P13164 125 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 ATP5EP56381 51 aaPredicted RBP0.9□□□□□ -2.27
CD44-233ENST00000531141 NPC2P61916 151 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 IQCJQ1A5X6 159 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 C9orf153Q5TBE3 101 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 UNQ5815/PRO19632Q6UWF5 114 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 C4orf33Q8N1A6 199 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 TTC9CQ8N5M4 171 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 TSKUQ8WUA8 353 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 S100ZQ8WXG8 99 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 TMEM141Q96I45 108 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 S100A13Q99584 98 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 DPY30Q9C005 99 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 LINC00846Q9NV44 126 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 KLK9Q9UKQ9 250 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 C22orf24Q9Y442 160 aa0.9□□□□□ -2.27
CD44-233ENST00000531141 TRBV10-1A0A0K0K1A3 114 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 TCRBV3S1A0A5B6 114 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 TMEM30CPA0ZSE6 113 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 FAM24AA6NFZ4 105 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 A6NIN4 97 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 TMEM262E9PQX1 116 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 H3BQ15 152 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 INE1O15225 51 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 IGHV3-30P01768 117 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 SPART-AS1P0CW21 52 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 IGHV3-30-5P0DP03 117 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 HTN3P15516 51 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 CBLN1P23435 193 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 EDDM3BP56851 147 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 MPV17LQ2QL34 196 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 C10orf128Q5T292 105 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 C9orf62Q8N4C0 152 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 LSM10Q969L4 123 aaKnown RBP0.89□□□□□ -2.27
CD44-233ENST00000531141 DMAC1Q96GE9 116 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 ATG5Q9H1Y0 275 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 NDUFA12Q9UI09 145 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 RABAC1Q9UI14 185 aa0.89□□□□□ -2.27
CD44-233ENST00000531141 MUC17Q685J3 4493 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 UBE2L5PA0A1B0GUS4 154 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 JMJD7-PLA2G4BH0Y9G9 81 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 H3BQF6 201 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 SSSCA1O60232 199 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 SPINK8P0C7L1 97 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 IL7P13232 177 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 PDE6GP18545 87 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 SNCAP37840 140 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 S100A10P60903 97 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 UBE2L3P68036 154 aaKnown RBP0.88□□□□□ -2.27
CD44-233ENST00000531141 HMGN3Q15651 99 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 C9orf116Q5BN46 136 aaPredicted RBP0.88□□□□□ -2.27
CD44-233ENST00000531141 RPL7L1Q6DKI1 246 aaKnown RBP0.88□□□□□ -2.27
CD44-233ENST00000531141 LYPD5Q6UWN5 251 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 C5orf38Q86SI9 138 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 Q8N6K4 173 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 VAMP8Q9BV40 100 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 BET1LQ9NYM9 111 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 SNURFQ9Y675 71 aa0.88□□□□□ -2.27
CD44-233ENST00000531141 LOC110117498A0A087WWA1 95 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 TRBV10-3A0A0K0K1G6 114 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms