RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 KLK5Q9Y337 293 aaPredicted RBP3.27□□□□□ -1.89
CD44-230ENST00000528922 MGAM2Q2M2H8 2515 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 HIVEP2P31629 2446 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 LINC00959A0A1B0GUT2 108 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 F8WDY8 70 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 CRYGAP11844 174 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 RPL18AQ02543 176 aaKnown RBP3.26□□□□□ -1.89
CD44-230ENST00000528922 DEFB136Q30KP8 78 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 NTM-AS1Q6ZSK4 140 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 LINC01006Q8NI28 216 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 ANAPC11Q9NYG5 84 aa3.26□□□□□ -1.89
CD44-230ENST00000528922 EPPK1P58107 5090 aaKnown RBP3.26□□□□□ -1.89
CD44-230ENST00000528922 WNK1Q9H4A3 2382 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 J3KT08 172 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 CCKP06307 115 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 LINC00694P0DN24 101 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 APOC4P55056 127 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 CCL18P55774 89 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 TMEM258P61165 79 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 SERP2Q8N6R1 65 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 SMIM11BQ8TCY0 68 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 LINC00167Q96N53 147 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 SS18L2Q9UHA2 77 aa3.25□□□□□ -1.89
CD44-230ENST00000528922 CCDC179H3BU77 68 aa3.24□□□□□ -1.89
CD44-230ENST00000528922 LECT2O14960 151 aa3.24□□□□□ -1.89
CD44-230ENST00000528922 HIST1H4AP62805 103 aaKnown RBP3.24□□□□□ -1.89
CD44-230ENST00000528922 SOSTDC1Q6X4U4 206 aa3.24□□□□□ -1.89
CD44-230ENST00000528922 LINC00337Q8N6G1 96 aa3.24□□□□□ -1.89
CD44-230ENST00000528922 TRBV7-6A0A0J9YX20 115 aa3.23□□□□□ -1.89
CD44-230ENST00000528922 A0A1B0GW54 56 aa3.23□□□□□ -1.89
CD44-230ENST00000528922 PFN2P35080 140 aa3.23□□□□□ -1.89
CD44-230ENST00000528922 RBM3P98179 157 aaKnown RBP3.23□□□□□ -1.89
CD44-230ENST00000528922 Q8N814 137 aa3.23□□□□□ -1.89
CD44-230ENST00000528922 VPS13CQ709C8 3753 aa3.23□□□□□ -1.89
CD44-230ENST00000528922 IGKV2-28A0A075B6P5 120 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 GVQW2A0A096LPI5 108 aaPredicted RBP3.22□□□□□ -1.89
CD44-230ENST00000528922 PLAC8L1A1L4L8 177 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 NDUFC1O43677 76 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 IGKV2D-28P01615 120 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 MIFP14174 115 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 LYPD5Q6UWN5 251 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 DSCR8Q96T75 97 aa3.22□□□□□ -1.89
CD44-230ENST00000528922 SONP18583 2426 aaKnown RBP3.22□□□□□ -1.89
CD44-230ENST00000528922 IGLV4-60A0A075B6I1 120 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 LOC110117498A0A087WWA1 95 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 IGKV3OR2-268A0A0C4DH90 116 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 LOC107984640A0A0U1RRK4 108 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 ATP5EP56381 51 aaPredicted RBP3.21□□□□□ -1.89
CD44-230ENST00000528922 LELP1Q5T871 98 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.21□□□□□ -1.89
CD44-230ENST00000528922 C14orf132Q9NPU4 83 aa3.21□□□□□ -1.89
CD44-230ENST00000528922 LOC100131303A0A0U1RQF7 123 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 H3BNG1 76 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 SPART-AS1P0CW21 52 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 DEFB130BP0DP73 79 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 DEFB130AP0DP74 79 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 XCL1P47992 114 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 DAD1P61803 113 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 REG3AQ06141 175 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 C3orf56Q8N813 242 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 CHCHD10Q8WYQ3 142 aaPredicted RBP3.2□□□□□ -1.9
CD44-230ENST00000528922 LAMTOR3Q9UHA4 124 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 SVEP1Q4LDE5 3571 aa3.2□□□□□ -1.9
CD44-230ENST00000528922 H0Y9J4 135 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 ANGP03950 147 aaKnown RBP3.19□□□□□ -1.9
CD44-230ENST00000528922 PRM2P04554 102 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 LINC00575Q6W349 94 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 SMCR5Q8TEV8 140 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 DIRC1Q969H9 104 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 LINC00846Q9NV44 126 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 PCLOQ9Y6V0 5065 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 HYDINQ4G0P3 5121 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 TRAV7A0A075B6U4 112 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 SPAG11BQ08648 103 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 C6orf99Q4VX62 202 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 C5orf47Q569G3 176 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 LINC00269Q8N2A0 174 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 C6orf223Q8N319 242 aa3.19□□□□□ -1.9
CD44-230ENST00000528922 PRKDCP78527 4128 aaKnown RBP3.18□□□□□ -1.9
CD44-230ENST00000528922 PANO1I0J062 215 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 NCR3O14931 201 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 ERC2-IT1O76042 136 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 IGLV6-57P01721 117 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 EGFEM1PQ0D2K5 195 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 KIAA0087Q14695 138 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 C22orf24Q9Y442 160 aa3.18□□□□□ -1.9
CD44-230ENST00000528922 TRAV23DV6A0A075B6W5 121 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 IGKV3D-7A0A0C4DH55 119 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 M0R378 163 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 COX7BP24311 80 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 Q6ZQT0 140 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 UPK3BQ9BT76 320 aa3.17□□□□□ -1.9
CD44-230ENST00000528922 TENM1Q9UKZ4 2725 aa3.16□□□□□ -1.9
CD44-230ENST00000528922 ANK3Q12955 4377 aaKnown RBP3.16□□□□□ -1.9
CD44-230ENST00000528922 ZNF73O43830 326 aaPredicted RBP3.16□□□□□ -1.9
CD44-230ENST00000528922 ZNF861PO60384 105 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 ELOF1P60002 83 aaKnown RBP3.15□□□□□ -1.91
CD44-230ENST00000528922 KLKP1Q107X0 134 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 RMI2Q96E14 147 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 DPH3Q96FX2 82 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms