RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 UBR4Q5T4S7 5183 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 PKHD1P08F94 4074 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 hDV103S1A0JD37 113 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 C16orf90A8MZG2 172 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 PRAC2D3DTV9 90 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 LECT2O14960 151 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 LINC01547P58512 204 aaPredicted RBP3.46□□□□□ -1.86
CD44-218ENST00000525469 ELOF1P60002 83 aaKnown RBP3.46□□□□□ -1.86
CD44-218ENST00000525469 RPL36AP83881 106 aaKnown RBP3.46□□□□□ -1.86
CD44-218ENST00000525469 ASB16-AS1Q495Z4 193 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 LCE1AQ5T7P2 110 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 FAM74A4Q5TZK3 123 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 RMI2Q96E14 147 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 ZNF625Q96I27 306 aaPredicted RBP3.46□□□□□ -1.86
CD44-218ENST00000525469 HERC1Q15751 4861 aa3.46□□□□□ -1.86
CD44-218ENST00000525469 LOC100131303A0A0U1RQF7 123 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 H3BUA1 57 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 NDUFA4O00483 81 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 BPY2O14599 106 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 APOC4P55056 127 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 SS18Q15532 418 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 LCA10Q71F78 164 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 SMIM11BQ8TCY0 68 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 FAM218AQ96MZ4 157 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 Q9HAA7 133 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 RBM12B-AS1Q9P1G2 102 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 LINC00474Q9P2X8 69 aa3.45□□□□□ -1.86
CD44-218ENST00000525469 TRBV6-8A0A0A6YYG3 113 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 M0R2N4 97 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 M0R378 163 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 NCR3O14931 201 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 RTL8CO15255 209 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 HAMPP81172 84 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 COX17Q14061 63 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 Q6ZQT0 140 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 C7orf65Q6ZTY9 151 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 C6orf223Q8N319 242 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 Q8N814 137 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 Q8N9W7 124 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 ZNF580Q9UK33 172 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 SNURFQ9Y675 71 aa3.44□□□□□ -1.86
CD44-218ENST00000525469 IGHV1OR15-1A0A075B7D0 117 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 A0A087WYN8 130 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 IGHV3-16A0A0C4DH30 117 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 TRBV6-4A0A1B0GX49 114 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 G3V318 75 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 H3BPC8 53 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 IGHV3-11P01762 117 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 APELAP0DMC3 54 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 NTM-AS1Q6ZSK4 140 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 Q6ZTC4 211 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 NKAPP1Q8N9T2 125 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 USMG5Q96IX5 58 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 MAP6D1Q9H9H5 199 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 CDKN2A-AS1Q9UH64 79 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 LINC00588Q9Y4M8 146 aa3.43□□□□□ -1.86
CD44-218ENST00000525469 IGHV3-72A0A0B4J1Y9 119 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 TRBV10-1A0A0K0K1A3 114 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 IGKV2-29A2NJV5 120 aaPredicted RBP3.42□□□□□ -1.86
CD44-218ENST00000525469 SMIM1B2RUZ4 78 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 K7EMT4 169 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 K7EQD1 137 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 ZNF73O43830 326 aaPredicted RBP3.42□□□□□ -1.86
CD44-218ENST00000525469 C11orf45Q8TAV5 145 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 COX7B2Q8TF08 81 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 DIRC1Q969H9 104 aa3.42□□□□□ -1.86
CD44-218ENST00000525469 ATP6V0E1O15342 81 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 GNRH2O43555 120 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 NANOS2P60321 138 aaKnown RBP3.41□□□□□ -1.86
CD44-218ENST00000525469 DEFB135Q30KP9 77 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 PRR9Q5T870 116 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 CLEC19AQ6UXS0 136 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 SOSTDC1Q6X4U4 206 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 LINC00269Q8N2A0 174 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 LINC00337Q8N6G1 96 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 SPANXA2-OT1Q8N9U9 137 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 LINC00467Q9BRT7 94 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 WFDC10AQ9H1F0 79 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 APLNQ9ULZ1 77 aa3.41□□□□□ -1.86
CD44-218ENST00000525469 TRAV22A0A0B4J277 110 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 IGHV3-53P01767 116 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 LINC00158P58513 81 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 SYCNQ0VAF6 134 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 LINC00242Q5T6M2 205 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 C1orf134Q5TEV5 83 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.4□□□□□ -1.87
CD44-218ENST00000525469 UNQ9165/PRO28630Q6UXU0 137 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 PRR26Q8N8Z3 221 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 CHCHD7Q9BUK0 85 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 OCR1Q9BZK8 76 aa3.4□□□□□ -1.87
CD44-218ENST00000525469 FLG2Q5D862 2391 aaPredicted RBP3.39□□□□□ -1.87
CD44-218ENST00000525469 SRRM2Q9UQ35 2752 aaKnown RBP3.39□□□□□ -1.87
CD44-218ENST00000525469 IGKV2-28A0A075B6P5 120 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 IGKV2D-28P01615 120 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 COX7BP24311 80 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 NDPQ00604 133 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 Q6ZRP5 223 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 UBE2DNLQ8IWF7 75 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 Q9BRP9 147 aa3.39□□□□□ -1.87
CD44-218ENST00000525469 CDC42SE1Q9NRR8 79 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms