RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 LINC00304Q8N9R0 145 aa10.75□□□□□ -0.69
PCDHA3-201ENST00000522353 C15orf56Q8N910 161 aa10.74□□□□□ -0.69
PCDHA3-201ENST00000522353 A8MWP4 228 aa10.73□□□□□ -0.69
PCDHA3-201ENST00000522353 COX6B2Q6YFQ2 88 aa10.73□□□□□ -0.69
PCDHA3-201ENST00000522353 LOC101927531A0A1B0GV80 90 aa10.73□□□□□ -0.69
PCDHA3-201ENST00000522353 PRRC2CQ9Y520 2896 aaKnown RBP10.73□□□□□ -0.69
PCDHA3-201ENST00000522353 KRTAP1-1Q07627 177 aa10.72□□□□□ -0.69
PCDHA3-201ENST00000522353 RPS28P62857 69 aaKnown RBP10.72□□□□□ -0.69
PCDHA3-201ENST00000522353 FLNAP21333 2647 aaKnown RBP10.72□□□□□ -0.69
PCDHA3-201ENST00000522353 LINC00528Q8N1L1 170 aa10.71□□□□□ -0.69
PCDHA3-201ENST00000522353 MRPL34Q9BQ48 92 aaKnown RBP10.7□□□□□ -0.7
PCDHA3-201ENST00000522353 TLX1NBP0CAT3 122 aa10.7□□□□□ -0.7
PCDHA3-201ENST00000522353 APLNQ9ULZ1 77 aa10.7□□□□□ -0.7
PCDHA3-201ENST00000522353 SMR3BP02814 79 aaPredicted RBP10.68□□□□□ -0.7
PCDHA3-201ENST00000522353 ITPR3Q14573 2671 aa10.66□□□□□ -0.7
PCDHA3-201ENST00000522353 PRO0628Q9UI54 55 aa10.66□□□□□ -0.7
PCDHA3-201ENST00000522353 PLA2G2DQ9UNK4 145 aa10.66□□□□□ -0.7
PCDHA3-201ENST00000522353 ZNF575Q86XF7 245 aa10.64□□□□□ -0.71
PCDHA3-201ENST00000522353 C9orf129Q5T035 196 aaKnown RBP10.63□□□□□ -0.71
PCDHA3-201ENST00000522353 K7EQZ3 153 aa10.63□□□□□ -0.71
PCDHA3-201ENST00000522353 ERC2-IT1O76042 136 aa10.63□□□□□ -0.71
PCDHA3-201ENST00000522353 IGFL1Q6UW32 110 aa10.63□□□□□ -0.71
PCDHA3-201ENST00000522353 DNAH12Q6ZR08 3092 aa10.63□□□□□ -0.71
PCDHA3-201ENST00000522353 IGLV7-43P04211 117 aa10.62□□□□□ -0.71
PCDHA3-201ENST00000522353 CNBPP62633 177 aaKnown RBP10.62□□□□□ -0.71
PCDHA3-201ENST00000522353 BPTFQ12830 3046 aa10.6□□□□□ -0.71
PCDHA3-201ENST00000522353 STAB1Q9NY15 2570 aa10.59□□□□□ -0.71
PCDHA3-201ENST00000522353 CFAP46Q8IYW2 2715 aa10.59□□□□□ -0.71
PCDHA3-201ENST00000522353 PSORS1C2Q9UIG4 136 aa10.57□□□□□ -0.72
PCDHA3-201ENST00000522353 C8orf17Q9NRJ1 99 aa10.57□□□□□ -0.72
PCDHA3-201ENST00000522353 DSCR10P59022 87 aa10.56□□□□□ -0.72
PCDHA3-201ENST00000522353 EIF4EBP3O60516 100 aaPredicted RBP10.56□□□□□ -0.72
PCDHA3-201ENST00000522353 PRR15Q8IV56 129 aa10.56□□□□□ -0.72
PCDHA3-201ENST00000522353 OBSCN-AS1Q96MR7 158 aa10.55□□□□□ -0.72
PCDHA3-201ENST00000522353 A0A1B0GVX0 72 aa10.55□□□□□ -0.72
PCDHA3-201ENST00000522353 Q8N377 158 aa10.55□□□□□ -0.72
PCDHA3-201ENST00000522353 A0A1W2PNN7 141 aa10.53□□□□□ -0.72
PCDHA3-201ENST00000522353 CEP350Q5VT06 3117 aa10.53□□□□□ -0.72
PCDHA3-201ENST00000522353 C9orf92A6NGG3 77 aa10.52□□□□□ -0.73
PCDHA3-201ENST00000522353 SPRR4Q96PI1 79 aa10.51□□□□□ -0.73
PCDHA3-201ENST00000522353 CASC10Q5T4H9 136 aa10.51□□□□□ -0.73
PCDHA3-201ENST00000522353 C4orf26Q17RF5 130 aa10.51□□□□□ -0.73
PCDHA3-201ENST00000522353 IGLV8-61A0A075B6I0 122 aa10.5□□□□□ -0.73
PCDHA3-201ENST00000522353 COA5Q86WW8 74 aa10.49□□□□□ -0.73
PCDHA3-201ENST00000522353 SETXQ7Z333 2677 aaKnown RBP10.49□□□□□ -0.73
PCDHA3-201ENST00000522353 ANAPC11Q9NYG5 84 aa10.48□□□□□ -0.73
PCDHA3-201ENST00000522353 LINC01600Q96MT4 127 aa10.48□□□□□ -0.73
PCDHA3-201ENST00000522353 UTRNP46939 3433 aa10.47□□□□□ -0.73
PCDHA3-201ENST00000522353 RBM12B-AS1Q9P1G2 102 aa10.47□□□□□ -0.73
PCDHA3-201ENST00000522353 CYP4F30PQ9H0H9 118 aa10.45□□□□□ -0.74
PCDHA3-201ENST00000522353 TNP2Q05952 138 aa10.45□□□□□ -0.74
PCDHA3-201ENST00000522353 WIPF1O43516 503 aa10.45□□□□□ -0.74
PCDHA3-201ENST00000522353 CENPEQ02224 2701 aa10.44□□□□□ -0.74
PCDHA3-201ENST00000522353 IGLV5-37A0A075B6J1 123 aa10.44□□□□□ -0.74
PCDHA3-201ENST00000522353 UQCR11O14957 56 aa10.43□□□□□ -0.74
PCDHA3-201ENST00000522353 KLKP1Q107X0 134 aa10.43□□□□□ -0.74
PCDHA3-201ENST00000522353 A0A0G2JQZ4 141 aa10.39□□□□□ -0.75
PCDHA3-201ENST00000522353 A8MUN3 132 aa10.38□□□□□ -0.75
PCDHA3-201ENST00000522353 TEP1Q99973 2627 aaKnown RBP10.37□□□□□ -0.75
PCDHA3-201ENST00000522353 A0A1W2PNM2 257 aa10.34□□□□□ -0.75
PCDHA3-201ENST00000522353 CHD7Q9P2D1 2997 aa10.32□□□□□ -0.76
PCDHA3-201ENST00000522353 CD164Q04900 197 aa10.32□□□□□ -0.76
PCDHA3-201ENST00000522353 IGLV5-48A0A075B6I7 105 aa10.3□□□□□ -0.76
PCDHA3-201ENST00000522353 MIR22HGQ0VDD5 57 aa10.28□□□□□ -0.76
PCDHA3-201ENST00000522353 SPINT4Q6UDR6 99 aa10.27□□□□□ -0.76
PCDHA3-201ENST00000522353 Q6ZSA8 131 aa10.27□□□□□ -0.76
PCDHA3-201ENST00000522353 IGLV7-46A0A075B6I9 117 aa10.27□□□□□ -0.77
PCDHA3-201ENST00000522353 H7BZZ5 65 aa10.26□□□□□ -0.77
PCDHA3-201ENST00000522353 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.26□□□□□ -0.77
PCDHA3-201ENST00000522353 FAM229BQ4G0N7 80 aa10.25□□□□□ -0.77
PCDHA3-201ENST00000522353 COL6A5A8TX70 2615 aa10.25□□□□□ -0.77
PCDHA3-201ENST00000522353 SPANXA2-OT1Q8N9U9 137 aa10.24□□□□□ -0.77
PCDHA3-201ENST00000522353 CRIPTQ9P021 101 aa10.24□□□□□ -0.77
PCDHA3-201ENST00000522353 TEX15Q9BXT5 2789 aa10.24□□□□□ -0.77
PCDHA3-201ENST00000522353 PRR26Q8N8Z3 221 aa10.23□□□□□ -0.77
PCDHA3-201ENST00000522353 AKAP13Q12802 2813 aa10.23□□□□□ -0.77
PCDHA3-201ENST00000522353 PLAC8Q9NZF1 115 aa10.19□□□□□ -0.78
PCDHA3-201ENST00000522353 FAM104AQ969W3 186 aa10.19□□□□□ -0.78
PCDHA3-201ENST00000522353 CHD9Q3L8U1 2897 aa10.18□□□□□ -0.78
PCDHA3-201ENST00000522353 Q8N1X5 172 aa10.17□□□□□ -0.78
PCDHA3-201ENST00000522353 LINC01554Q52M75 96 aa10.15□□□□□ -0.78
PCDHA3-201ENST00000522353 PCNTO95613 3336 aa10.15□□□□□ -0.78
PCDHA3-201ENST00000522353 CR1P17927 2039 aa10.14□□□□□ -0.79
PCDHA3-201ENST00000522353 HTTP42858 3142 aa10.13□□□□□ -0.79
PCDHA3-201ENST00000522353 C5orf42Q9H799 3197 aa10.13□□□□□ -0.79
PCDHA3-201ENST00000522353 ZNF292O60281 2723 aa10.12□□□□□ -0.79
PCDHA3-201ENST00000522353 CHD6Q8TD26 2715 aa10.1□□□□□ -0.79
PCDHA3-201ENST00000522353 BAHCC1Q9P281 2608 aa10.1□□□□□ -0.79
PCDHA3-201ENST00000522353 M0R2T5 61 aa10.09□□□□□ -0.79
PCDHA3-201ENST00000522353 RANBP2P49792 3224 aaKnown RBP10.09□□□□□ -0.79
PCDHA3-201ENST00000522353 NBEAL1Q6ZS30 2694 aa10.09□□□□□ -0.79
PCDHA3-201ENST00000522353 UNC79Q9P2D8 2635 aa10.09□□□□□ -0.79
PCDHA3-201ENST00000522353 LCE6AA0A183 80 aa10.08□□□□□ -0.8
PCDHA3-201ENST00000522353 OCR1Q9BZK8 76 aa10.07□□□□□ -0.8
PCDHA3-201ENST00000522353 NOTCH1P46531 2555 aa10.05□□□□□ -0.8
PCDHA3-201ENST00000522353 CDC42SE1Q9NRR8 79 aa10.05□□□□□ -0.8
PCDHA3-201ENST00000522353 FLG2Q5D862 2391 aaPredicted RBP10.03□□□□□ -0.8
PCDHA3-201ENST00000522353 A0A0D9SG42 100 aa10.03□□□□□ -0.8
PCDHA3-201ENST00000522353 SPRR1AP35321 89 aa10.02□□□□□ -0.8
PCDHA3-201ENST00000522353 TRANK1O15050 2925 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms