RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 CD164L2Q6UWJ8 174 aa6.87□□□□□ -1.31
PDGFRB-207ENST00000520579 HIVEP1P15822 2718 aa6.86□□□□□ -1.31
PDGFRB-207ENST00000520579 TEP1Q99973 2627 aaKnown RBP6.86□□□□□ -1.31
PDGFRB-207ENST00000520579 REG3AQ06141 175 aa6.85□□□□□ -1.31
PDGFRB-207ENST00000520579 DIRC1Q969H9 104 aa6.85□□□□□ -1.31
PDGFRB-207ENST00000520579 PDZD2O15018 2839 aa6.84□□□□□ -1.31
PDGFRB-207ENST00000520579 CYSRT1A8MQ03 144 aa6.84□□□□□ -1.31
PDGFRB-207ENST00000520579 UBR5O95071 2799 aaPredicted RBP6.84□□□□□ -1.31
PDGFRB-207ENST00000520579 ZNF706Q9Y5V0 76 aaPredicted RBP6.84□□□□□ -1.31
PDGFRB-207ENST00000520579 C16orf74Q96GX8 76 aa6.84□□□□□ -1.31
PDGFRB-207ENST00000520579 Q5VV11 94 aa6.83□□□□□ -1.32
PDGFRB-207ENST00000520579 Q8IZM0 81 aa6.83□□□□□ -1.32
PDGFRB-207ENST00000520579 LY6G6DO95868 133 aa6.83□□□□□ -1.32
PDGFRB-207ENST00000520579 ATRQ13535 2644 aa6.83□□□□□ -1.32
PDGFRB-207ENST00000520579 PSCAO43653 123 aa6.82□□□□□ -1.32
PDGFRB-207ENST00000520579 COX7BP24311 80 aa6.82□□□□□ -1.32
PDGFRB-207ENST00000520579 GIG44P09565 113 aaPredicted RBP6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 A0A0G2JQZ4 141 aa6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 A0A1W2PNN7 141 aa6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 DEFB135Q30KP9 77 aa6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 C4orf3Q8WVX3 66 aa6.81□□□□□ -1.32
PDGFRB-207ENST00000520579 PHF5AQ7RTV0 110 aaKnown RBP6.8□□□□□ -1.32
PDGFRB-207ENST00000520579 SMIM29Q86T20 159 aa6.8□□□□□ -1.32
PDGFRB-207ENST00000520579 CXCL6P80162 114 aa6.8□□□□□ -1.32
PDGFRB-207ENST00000520579 Q6YL49 198 aa6.8□□□□□ -1.32
PDGFRB-207ENST00000520579 KRTAP10-9P60411 292 aa6.79□□□□□ -1.32
PDGFRB-207ENST00000520579 KIAA0087Q14695 138 aa6.78□□□□□ -1.32
PDGFRB-207ENST00000520579 VWFP04275 2813 aa6.78□□□□□ -1.32
PDGFRB-207ENST00000520579 A0A0J9YWU9 116 aa6.78□□□□□ -1.32
PDGFRB-207ENST00000520579 MP68P56378 58 aa6.78□□□□□ -1.32
PDGFRB-207ENST00000520579 A6NN06 94 aa6.77□□□□□ -1.32
PDGFRB-207ENST00000520579 ITPR2Q14571 2701 aa6.77□□□□□ -1.33
PDGFRB-207ENST00000520579 CAMK2N2Q96S95 79 aa6.77□□□□□ -1.33
PDGFRB-207ENST00000520579 ERC2-IT1O76042 136 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 LIMD2Q9BT23 127 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 WFDC13Q8IUB5 93 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 RPL37AP8A6NKH3 93 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 LINC00313P59037 77 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 LINC00167Q96N53 147 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 DNAJC9-AS1A6NH13 148 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 PRO0255Q9UI72 69 aa6.76□□□□□ -1.33
PDGFRB-207ENST00000520579 J3QKU1 62 aa6.75□□□□□ -1.33
PDGFRB-207ENST00000520579 PKD1L1Q8TDX9 2849 aa6.74□□□□□ -1.33
PDGFRB-207ENST00000520579 LOC110117498A0A087WWA1 95 aa6.74□□□□□ -1.33
PDGFRB-207ENST00000520579 FSHBP01225 129 aa6.74□□□□□ -1.33
PDGFRB-207ENST00000520579 IGHV4-31P0DP07 118 aa6.74□□□□□ -1.33
PDGFRB-207ENST00000520579 IGKV4-1P06312 121 aa6.73□□□□□ -1.33
PDGFRB-207ENST00000520579 WFDC10BQ8IUB3 73 aa6.73□□□□□ -1.33
PDGFRB-207ENST00000520579 OCR1Q9BZK8 76 aa6.73□□□□□ -1.33
PDGFRB-207ENST00000520579 C6orf48Q9UBA6 75 aa6.73□□□□□ -1.33
PDGFRB-207ENST00000520579 RETNLBQ9BQ08 111 aa6.73□□□□□ -1.33
PDGFRB-207ENST00000520579 B9D2Q9BPU9 175 aa6.72□□□□□ -1.33
PDGFRB-207ENST00000520579 MOBPQ13875 183 aa6.71□□□□□ -1.33
PDGFRB-207ENST00000520579 LINC00612Q8N6U2 182 aa6.71□□□□□ -1.33
PDGFRB-207ENST00000520579 PDE6GP18545 87 aa6.71□□□□□ -1.34
PDGFRB-207ENST00000520579 ADM2Q7Z4H4 148 aa6.71□□□□□ -1.34
PDGFRB-207ENST00000520579 LINC00208Q96KT6 92 aa6.7□□□□□ -1.34
PDGFRB-207ENST00000520579 CASC2Q6XLA1 102 aa6.7□□□□□ -1.34
PDGFRB-207ENST00000520579 ST20-AS1Q8NBB2 130 aa6.7□□□□□ -1.34
PDGFRB-207ENST00000520579 NOTCH1P46531 2555 aa6.7□□□□□ -1.34
PDGFRB-207ENST00000520579 A0A096LNI7 61 aa6.69□□□□□ -1.34
PDGFRB-207ENST00000520579 IGLV6-57P01721 117 aa6.69□□□□□ -1.34
PDGFRB-207ENST00000520579 COX17Q14061 63 aa6.69□□□□□ -1.34
PDGFRB-207ENST00000520579 Q8N9P0 234 aaPredicted RBP6.69□□□□□ -1.34
PDGFRB-207ENST00000520579 CDC42SE1Q9NRR8 79 aa6.69□□□□□ -1.34
PDGFRB-207ENST00000520579 IGKV2D-24A0A075B6R9 120 aa6.68□□□□□ -1.34
PDGFRB-207ENST00000520579 NBEAL1Q6ZS30 2694 aa6.68□□□□□ -1.34
PDGFRB-207ENST00000520579 CYP4F30PQ9H0H9 118 aa6.68□□□□□ -1.34
PDGFRB-207ENST00000520579 TENM4Q6N022 2769 aa6.68□□□□□ -1.34
PDGFRB-207ENST00000520579 COL6A5A8TX70 2615 aa6.68□□□□□ -1.34
PDGFRB-207ENST00000520579 A0A1B0GUV1 79 aa6.67□□□□□ -1.34
PDGFRB-207ENST00000520579 CSNK1G2-AS1Q8NCQ2 148 aa6.67□□□□□ -1.34
PDGFRB-207ENST00000520579 SPAG11AQ6PDA7 123 aa6.66□□□□□ -1.34
PDGFRB-207ENST00000520579 K7EQZ3 153 aa6.66□□□□□ -1.34
PDGFRB-207ENST00000520579 MAST4O15021 2626 aa6.65□□□□□ -1.34
PDGFRB-207ENST00000520579 RPL37AP61513 92 aaKnown RBP6.65□□□□□ -1.34
PDGFRB-207ENST00000520579 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 ELOF1P60002 83 aaKnown RBP6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 KPRPQ5T749 579 aaPredicted RBP6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 C9orf66Q5T8R8 295 aa6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 A0A0A0MQY5 61 aa6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 LOC101927531A0A1B0GV80 90 aa6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 NDUFB1O75438 58 aa6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 C19orf73Q9NVV2 129 aa6.64□□□□□ -1.35
PDGFRB-207ENST00000520579 ETDCA0A1B0GVM5 59 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 DEFB113Q30KQ7 82 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 C1orf137Q5JT78 98 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 DSCR9P59020 149 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 IGLV1-51P01701 117 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 X6R8D5 127 aa6.63□□□□□ -1.35
PDGFRB-207ENST00000520579 FAM168BA1KXE4 195 aa6.62□□□□□ -1.35
PDGFRB-207ENST00000520579 SRRM2Q9UQ35 2752 aaKnown RBP6.61□□□□□ -1.35
PDGFRB-207ENST00000520579 Q75L30 129 aa6.61□□□□□ -1.35
PDGFRB-207ENST00000520579 Q8N377 158 aa6.61□□□□□ -1.35
PDGFRB-207ENST00000520579 TENM1Q9UKZ4 2725 aa6.6□□□□□ -1.35
PDGFRB-207ENST00000520579 A0A1W2PNM2 257 aa6.6□□□□□ -1.35
PDGFRB-207ENST00000520579 SMR3AQ99954 134 aa6.6□□□□□ -1.35
PDGFRB-207ENST00000520579 LINC00528Q8N1L1 170 aa6.6□□□□□ -1.35
PDGFRB-207ENST00000520579 PCOTHQ58A44 107 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms