RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 LINC00269Q8N2A0 174 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 C4orf3Q8WVX3 66 aa3.75□□□□□ -1.81
NUP54-218ENST00000515460 G3V318 75 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 JMJD7-PLA2G4BH0Y9G9 81 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 H0Y9J4 135 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 SAA1P0DJI8 122 aaPredicted RBP3.74□□□□□ -1.81
NUP54-218ENST00000515460 ERHP84090 104 aaKnown RBP3.74□□□□□ -1.81
NUP54-218ENST00000515460 SYCNQ0VAF6 134 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 FAM19A3Q7Z5A8 133 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 TMEM254Q8TBM7 123 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 LRP1BQ9NZR2 4599 aa3.74□□□□□ -1.81
NUP54-218ENST00000515460 LRP2P98164 4655 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 IGHV7-81A0A0B4J1V7 117 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 TRAV22A0A0B4J277 110 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 NDUFAF8A1L188 74 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 C12orf77C9JDV5 145 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 CRIP1P50238 77 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 LINC01554Q52M75 96 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 Q6ZRP5 223 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 GPHB5Q86YW7 130 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 LIMD2Q9BT23 127 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 C22orf24Q9Y442 160 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 SNURFQ9Y675 71 aa3.73□□□□□ -1.81
NUP54-218ENST00000515460 A0A087WW49 117 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 A0A0J9YWU9 116 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 KLLNB2CW77 178 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 H0YGX0 51 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 ATP6V0E1O15342 81 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 C15orf32Q32M92 178 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 NPBQ8NG41 125 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 DNAH6Q9C0G6 4158 aa3.72□□□□□ -1.81
NUP54-218ENST00000515460 IGKV1D-37A0A075B6S9 117 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 A0A087WZ39 114 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 IGHV3OR16-9A0A0B4J2B5 98 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 GNRH2O43555 120 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 IGLV1-51P01701 117 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 LINC00313P59037 77 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 NDPQ00604 133 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 NREPQ16612 68 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 ENHOQ6UWT2 76 aa3.71□□□□□ -1.82
NUP54-218ENST00000515460 MRPL36Q9P0J6 103 aaKnown RBP3.71□□□□□ -1.82
NUP54-218ENST00000515460 TRAV12-3A0A0B4J271 114 aa3.7□□□□□ -1.82
NUP54-218ENST00000515460 IGHV3-11P01762 117 aa3.7□□□□□ -1.82
NUP54-218ENST00000515460 C14orf132Q9NPU4 83 aa3.7□□□□□ -1.82
NUP54-218ENST00000515460 CDC42SE1Q9NRR8 79 aa3.7□□□□□ -1.82
NUP54-218ENST00000515460 NDUFA12Q9UI09 145 aa3.7□□□□□ -1.82
NUP54-218ENST00000515460 NACAE9PAV3 2078 aa3.69□□□□□ -1.82
NUP54-218ENST00000515460 C16orf90A8MZG2 172 aa3.69□□□□□ -1.82
NUP54-218ENST00000515460 HCG22E2RYF7 251 aa3.69□□□□□ -1.82
NUP54-218ENST00000515460 TRBV6-8A0A0A6YYG3 113 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 PSPHP1O15172 72 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 TRGV3P03979 118 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 PRM2P04554 102 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 SAA2P0DJI9 122 aaPredicted RBP3.68□□□□□ -1.82
NUP54-218ENST00000515460 RPL39P5Q59GN2 51 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 Q5VV11 94 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 LINC00337Q8N6G1 96 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 NDUFA4L2Q9NRX3 87 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 KIF25-AS1Q9Y6Z4 181 aa3.68□□□□□ -1.82
NUP54-218ENST00000515460 DNAH5Q8TE73 4624 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 H3BQ85 93 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 H3BRN7 92 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 PSCAO43653 123 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 CTSGP08311 255 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 IGHV3-30-3P0DP02 117 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 PDE6GP18545 87 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 RNF5Q99942 180 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 ORMDL1Q9P0S3 153 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 DSCAML1Q8TD84 2053 aa3.67□□□□□ -1.82
NUP54-218ENST00000515460 KRTAP16-1A8MUX0 517 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 CHKB-CPT1BH3BT56 60 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 NDUFA1O15239 70 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 IGLV2-23P01705 113 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 IGKV1-16P04430 117 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 ELOF1P60002 83 aaKnown RBP3.66□□□□□ -1.82
NUP54-218ENST00000515460 C11orf72Q8NBR9 251 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 SPTSSBQ8NFR3 76 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 LINC00167Q96N53 147 aa3.66□□□□□ -1.82
NUP54-218ENST00000515460 TRAV21A0A0B4J279 112 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 TRBV6-5A0A0K0K1A5 114 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 H3BUA1 57 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 NDUFB1O75438 58 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 CRPP02741 224 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 PRR3P79522 188 aaKnown RBP3.65□□□□□ -1.83
NUP54-218ENST00000515460 C9orf116Q5BN46 136 aaPredicted RBP3.65□□□□□ -1.83
NUP54-218ENST00000515460 C1orf64Q8NEQ6 169 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 TMEM167AQ8TBQ9 72 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 LINC00308Q8TCZ7 52 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 Q9HAA7 133 aa3.65□□□□□ -1.83
NUP54-218ENST00000515460 LOC110117498A0A087WWA1 95 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 IGLV9-49A0A0B4J1Y8 123 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 TRAV10A0A0B4J240 114 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 LOC101927531A0A1B0GV80 90 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 A0A1B0GW54 56 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 DEFB114Q30KQ6 69 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 C6orf99Q4VX62 202 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 SCXQ7RTU7 201 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 ZNF625Q96I27 306 aaPredicted RBP3.64□□□□□ -1.83
NUP54-218ENST00000515460 FAM218AQ96MZ4 157 aa3.64□□□□□ -1.83
NUP54-218ENST00000515460 WFDC10AQ9H1F0 79 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms