RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 TSPAN13O95857 204 aa8.11□□□□□ -1.11
LIMCH1-220ENST00000514190 RPL28P46779 137 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-220ENST00000514190 XGP55808 180 aa8.11□□□□□ -1.11
LIMCH1-220ENST00000514190 KRTAP4-5Q9BYR2 181 aa8.11□□□□□ -1.11
LIMCH1-220ENST00000514190 TRAV23DV6A0A075B6W5 121 aa8.1□□□□□ -1.11
LIMCH1-220ENST00000514190 PRYO14603 147 aa8.1□□□□□ -1.11
LIMCH1-220ENST00000514190 UBE2BP63146 152 aa8.1□□□□□ -1.11
LIMCH1-220ENST00000514190 Q1RN00 199 aa8.1□□□□□ -1.11
LIMCH1-220ENST00000514190 KRTAP11-1Q8IUC1 163 aa8.1□□□□□ -1.11
LIMCH1-220ENST00000514190 HAMPP81172 84 aa8.09□□□□□ -1.11
LIMCH1-220ENST00000514190 Q8N1X5 172 aa8.09□□□□□ -1.11
LIMCH1-220ENST00000514190 C9orf118A6NHY6 69 aa8.08□□□□□ -1.12
LIMCH1-220ENST00000514190 ZNF73O43830 326 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-220ENST00000514190 SPRR1AP35321 89 aa8.07□□□□□ -1.12
LIMCH1-220ENST00000514190 C6orf99Q4VX62 202 aa8.07□□□□□ -1.12
LIMCH1-220ENST00000514190 REG3GQ6UW15 175 aa8.07□□□□□ -1.12
LIMCH1-220ENST00000514190 VPS13BQ7Z7G8 4022 aa8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 KRTAP4-16G5E9R7 235 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 TRIAP1O43715 76 aa8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 PSMB2P49721 201 aa8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 DIRC1Q969H9 104 aa8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 NAA38Q9BRA0 125 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-220ENST00000514190 TRBV7-6A0A0J9YX20 115 aa8.05□□□□□ -1.12
LIMCH1-220ENST00000514190 H3BUT2 72 aa8.05□□□□□ -1.12
LIMCH1-220ENST00000514190 VAMP3Q15836 100 aa8.05□□□□□ -1.12
LIMCH1-220ENST00000514190 COX6CP09669 75 aa8.04□□□□□ -1.12
LIMCH1-220ENST00000514190 PSORS1C2Q9UIG4 136 aa8.04□□□□□ -1.12
LIMCH1-220ENST00000514190 H0YGX0 51 aa8.03□□□□□ -1.12
LIMCH1-220ENST00000514190 SCGB1C2P0DMR2 95 aa8.03□□□□□ -1.12
LIMCH1-220ENST00000514190 ETDCA0A1B0GVM5 59 aa8.02□□□□□ -1.13
LIMCH1-220ENST00000514190 B5MCH6 92 aa8.02□□□□□ -1.13
LIMCH1-220ENST00000514190 BCE1O60756 84 aa8.02□□□□□ -1.13
LIMCH1-220ENST00000514190 COX7BP24311 80 aa8.02□□□□□ -1.13
LIMCH1-220ENST00000514190 A0A1W2PPM0 123 aa8.01□□□□□ -1.13
LIMCH1-220ENST00000514190 ELOF1P60002 83 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-220ENST00000514190 C1orf137Q5JT78 98 aa8□□□□□ -1.13
LIMCH1-220ENST00000514190 FAM19A1Q7Z5A9 133 aa8□□□□□ -1.13
LIMCH1-220ENST00000514190 LINC00528Q8N1L1 170 aa8□□□□□ -1.13
LIMCH1-220ENST00000514190 SRRM2Q9UQ35 2752 aaKnown RBP8□□□□□ -1.13
LIMCH1-220ENST00000514190 H0Y9J4 135 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 SMR3BP02814 79 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 INAFM2P0DMQ5 153 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 FABP2P12104 132 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 LYRM7Q5U5X0 104 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 LINC00575Q6W349 94 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 Q6ZRX8 168 aa7.99□□□□□ -1.13
LIMCH1-220ENST00000514190 KRTAP13-1Q8IUC0 172 aa7.98□□□□□ -1.13
LIMCH1-220ENST00000514190 CLEC2BQ92478 149 aa7.98□□□□□ -1.13
LIMCH1-220ENST00000514190 UBE2AP49459 152 aa7.97□□□□□ -1.13
LIMCH1-220ENST00000514190 Q5VSD8 79 aa7.97□□□□□ -1.13
LIMCH1-220ENST00000514190 FAM218AQ96MZ4 157 aa7.97□□□□□ -1.13
LIMCH1-220ENST00000514190 MYCBP2O75592 4640 aa7.96□□□□□ -1.13
LIMCH1-220ENST00000514190 SLC25A20O43772 301 aa7.96□□□□□ -1.14
LIMCH1-220ENST00000514190 IGLV7-43P04211 117 aa7.96□□□□□ -1.14
LIMCH1-220ENST00000514190 PRLHP81277 87 aa7.96□□□□□ -1.14
LIMCH1-220ENST00000514190 Q9BRP9 147 aa7.96□□□□□ -1.14
LIMCH1-220ENST00000514190 DHRS4-AS1Q9P1J3 65 aa7.96□□□□□ -1.14
LIMCH1-220ENST00000514190 TRBV20-1A0A075B6N2 111 aa7.95□□□□□ -1.14
LIMCH1-220ENST00000514190 A0A1B0GX51 115 aa7.95□□□□□ -1.14
LIMCH1-220ENST00000514190 ZNF861PO60384 105 aa7.95□□□□□ -1.14
LIMCH1-220ENST00000514190 TCL1BO95988 128 aa7.95□□□□□ -1.14
LIMCH1-220ENST00000514190 RPL37AP61513 92 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-220ENST00000514190 HERC1Q15751 4861 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 hADV29S1A0JD25 119 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 FAM229AH3BQW9 127 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 LST1O00453 97 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 SNCGO76070 127 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 SMCR5Q8TEV8 140 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 SPCS1Q9Y6A9 102 aa7.94□□□□□ -1.14
LIMCH1-220ENST00000514190 ATXN8Q156A1 80 aa7.93□□□□□ -1.14
LIMCH1-220ENST00000514190 HIGD2AQ9BW72 106 aa7.93□□□□□ -1.14
LIMCH1-220ENST00000514190 DMBT1Q9UGM3 2413 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-220ENST00000514190 ERC2-IT1O76042 136 aa7.92□□□□□ -1.14
LIMCH1-220ENST00000514190 TRACP01848 142 aa7.92□□□□□ -1.14
LIMCH1-220ENST00000514190 FLG2Q5D862 2391 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-220ENST00000514190 A0A1B0GV90 55 aa7.9□□□□□ -1.14
LIMCH1-220ENST00000514190 K7EP34 96 aa7.9□□□□□ -1.14
LIMCH1-220ENST00000514190 KRTAP10-4P60372 401 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-220ENST00000514190 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-220ENST00000514190 GTF2H5Q6ZYL4 71 aa7.89□□□□□ -1.15
LIMCH1-220ENST00000514190 H3BMG7 143 aa7.88□□□□□ -1.15
LIMCH1-220ENST00000514190 DNAL4O96015 105 aa7.88□□□□□ -1.15
LIMCH1-220ENST00000514190 PLA2G1BP04054 148 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-220ENST00000514190 Q6ZQY7 126 aa7.88□□□□□ -1.15
LIMCH1-220ENST00000514190 ST20-AS1Q8NBB2 130 aa7.87□□□□□ -1.15
LIMCH1-220ENST00000514190 OCIAD2Q56VL3 154 aa7.86□□□□□ -1.15
LIMCH1-220ENST00000514190 IGLV5-48A0A075B6I7 105 aa7.85□□□□□ -1.15
LIMCH1-220ENST00000514190 C9JAW5 83 aa7.85□□□□□ -1.15
LIMCH1-220ENST00000514190 SPINK6Q6UWN8 80 aa7.85□□□□□ -1.15
LIMCH1-220ENST00000514190 ORMDL1Q9P0S3 153 aa7.85□□□□□ -1.15
LIMCH1-220ENST00000514190 PKHD1L1Q86WI1 4243 aa7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 H3BQ85 93 aa7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 GHRHP01286 108 aa7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 BAALC-AS2P0C853 105 aa7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 LINC01547P58512 204 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 SPRR4Q96PI1 79 aa7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 ZNF706Q9Y5V0 76 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-220ENST00000514190 UBE2V1Q13404 147 aa7.83□□□□□ -1.16
LIMCH1-220ENST00000514190 Q8N377 158 aa7.83□□□□□ -1.16
LIMCH1-220ENST00000514190 DEFB105AQ8NG35 78 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms