RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 C1orf137Q5JT78 98 aa7.89□□□□□ -1.15
LIMCH1-213ENST00000511496 ADM2Q7Z4H4 148 aa7.89□□□□□ -1.15
LIMCH1-213ENST00000511496 COA5Q86WW8 74 aa7.89□□□□□ -1.15
LIMCH1-213ENST00000511496 HIVEP3Q5T1R4 2406 aa7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 GCN1Q92616 2671 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 ZANQ9Y493 2812 aa7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 SPINK7P58062 85 aa7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 DSCR9P59020 149 aa7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 C6orf48Q9UBA6 75 aa7.88□□□□□ -1.15
LIMCH1-213ENST00000511496 H0Y9P7 68 aa7.87□□□□□ -1.15
LIMCH1-213ENST00000511496 SETXQ7Z333 2677 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-213ENST00000511496 PRR26Q8N8Z3 221 aa7.86□□□□□ -1.15
LIMCH1-213ENST00000511496 Q9BRP9 147 aa7.86□□□□□ -1.15
LIMCH1-213ENST00000511496 MUC6Q6W4X9 2439 aa7.86□□□□□ -1.15
LIMCH1-213ENST00000511496 KCNQ1DNQ9H478 68 aa7.86□□□□□ -1.15
LIMCH1-213ENST00000511496 AKAP9Q99996 3911 aa7.86□□□□□ -1.15
LIMCH1-213ENST00000511496 TTC28Q96AY4 2481 aa7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 GIG44P09565 113 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 LINC01554Q52M75 96 aa7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 MSMBP08118 114 aa7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 B4DSR2 109 aa7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 VPREB1P12018 145 aa7.85□□□□□ -1.15
LIMCH1-213ENST00000511496 A0A0G2JQZ4 141 aa7.84□□□□□ -1.15
LIMCH1-213ENST00000511496 A0A1W2PNN7 141 aa7.84□□□□□ -1.15
LIMCH1-213ENST00000511496 EPG5Q9HCE0 2579 aa7.84□□□□□ -1.15
LIMCH1-213ENST00000511496 IGLV5-48A0A075B6I7 105 aa7.84□□□□□ -1.16
LIMCH1-213ENST00000511496 SPANXA2-OT1Q8N9U9 137 aa7.84□□□□□ -1.16
LIMCH1-213ENST00000511496 Q8NBF4 154 aa7.84□□□□□ -1.16
LIMCH1-213ENST00000511496 MXRA5Q9NR99 2828 aa7.83□□□□□ -1.16
LIMCH1-213ENST00000511496 SERTAD4-AS1Q5TG53 156 aa7.83□□□□□ -1.16
LIMCH1-213ENST00000511496 UTP20O75691 2785 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-213ENST00000511496 PRO3102Q9H379 93 aa7.82□□□□□ -1.16
LIMCH1-213ENST00000511496 RPL37AP61513 92 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-213ENST00000511496 C7orf33Q8WU49 177 aa7.82□□□□□ -1.16
LIMCH1-213ENST00000511496 ZNF702PQ9H963 129 aa7.82□□□□□ -1.16
LIMCH1-213ENST00000511496 CASC2Q6XLA1 102 aa7.81□□□□□ -1.16
LIMCH1-213ENST00000511496 PCOTHQ58A44 107 aa7.81□□□□□ -1.16
LIMCH1-213ENST00000511496 CAMK2N2Q96S95 79 aa7.81□□□□□ -1.16
LIMCH1-213ENST00000511496 CSNK1G2-AS1Q8NCQ2 148 aa7.8□□□□□ -1.16
LIMCH1-213ENST00000511496 NAV2Q8IVL1 2488 aa7.79□□□□□ -1.16
LIMCH1-213ENST00000511496 MAPK1IP1LQ8NDC0 245 aa7.79□□□□□ -1.16
LIMCH1-213ENST00000511496 PRO0255Q9UI72 69 aa7.79□□□□□ -1.16
LIMCH1-213ENST00000511496 CFAP46Q8IYW2 2715 aa7.79□□□□□ -1.16
LIMCH1-213ENST00000511496 IGKV2D-24A0A075B6R9 120 aa7.78□□□□□ -1.16
LIMCH1-213ENST00000511496 PKD1L2Q7Z442 2459 aa7.78□□□□□ -1.16
LIMCH1-213ENST00000511496 Q8NAQ8 132 aa7.78□□□□□ -1.16
LIMCH1-213ENST00000511496 IGF2RP11717 2491 aa7.77□□□□□ -1.17
LIMCH1-213ENST00000511496 POLQO75417 2590 aa7.77□□□□□ -1.17
LIMCH1-213ENST00000511496 LINC01558Q9Y6Z2 57 aa7.76□□□□□ -1.17
LIMCH1-213ENST00000511496 OTOGQ6ZRI0 2925 aa7.76□□□□□ -1.17
LIMCH1-213ENST00000511496 LRRK2Q5S007 2527 aa7.76□□□□□ -1.17
LIMCH1-213ENST00000511496 A0A1B0GW54 56 aa7.75□□□□□ -1.17
LIMCH1-213ENST00000511496 DEFB4AO15263 64 aa7.75□□□□□ -1.17
LIMCH1-213ENST00000511496 C4orf3Q8WVX3 66 aa7.75□□□□□ -1.17
LIMCH1-213ENST00000511496 RPL37AP8A6NKH3 93 aa7.75□□□□□ -1.17
LIMCH1-213ENST00000511496 IGLV1-51P01701 117 aa7.75□□□□□ -1.17
LIMCH1-213ENST00000511496 GVQW2A0A096LPI5 108 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-213ENST00000511496 SPRR4Q96PI1 79 aa7.74□□□□□ -1.17
LIMCH1-213ENST00000511496 C9orf163Q8N9P6 203 aa7.74□□□□□ -1.17
LIMCH1-213ENST00000511496 ZNF462Q96JM2 2506 aa7.73□□□□□ -1.17
LIMCH1-213ENST00000511496 ZNF292O60281 2723 aa7.73□□□□□ -1.17
LIMCH1-213ENST00000511496 HTN3P15516 51 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 A0A087WSZ3 146 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 SPTBN4Q9H254 2564 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 MTORP42345 2549 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 CCL19Q99731 98 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 CENPEQ02224 2701 aa7.72□□□□□ -1.17
LIMCH1-213ENST00000511496 IGLV7-46A0A075B6I9 117 aa7.71□□□□□ -1.18
LIMCH1-213ENST00000511496 H3BPC8 53 aa7.7□□□□□ -1.18
LIMCH1-213ENST00000511496 TNP2Q05952 138 aa7.7□□□□□ -1.18
LIMCH1-213ENST00000511496 CHD8Q9HCK8 2581 aa7.69□□□□□ -1.18
LIMCH1-213ENST00000511496 IGLV1-50A0A075B6I6 118 aa7.68□□□□□ -1.18
LIMCH1-213ENST00000511496 EGFEM1PQ0D2K5 195 aa7.68□□□□□ -1.18
LIMCH1-213ENST00000511496 LINC00476Q8WZB0 136 aa7.68□□□□□ -1.18
LIMCH1-213ENST00000511496 DHRS4-AS1Q9P1J3 65 aa7.68□□□□□ -1.18
LIMCH1-213ENST00000511496 ACACBO00763 2458 aa7.68□□□□□ -1.18
LIMCH1-213ENST00000511496 KRTAP29-1A8MX34 341 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-213ENST00000511496 RETNLBQ9BQ08 111 aa7.67□□□□□ -1.18
LIMCH1-213ENST00000511496 Q6ZRX8 168 aa7.66□□□□□ -1.18
LIMCH1-213ENST00000511496 PLAC8Q9NZF1 115 aa7.66□□□□□ -1.18
LIMCH1-213ENST00000511496 UBR5O95071 2799 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-213ENST00000511496 PLA2G1BP04054 148 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-213ENST00000511496 UNC79Q9P2D8 2635 aa7.65□□□□□ -1.18
LIMCH1-213ENST00000511496 Q6YL49 198 aa7.65□□□□□ -1.18
LIMCH1-213ENST00000511496 HIVEP2P31629 2446 aa7.65□□□□□ -1.18
LIMCH1-213ENST00000511496 CNBPP62633 177 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-213ENST00000511496 IGFL1Q6UW32 110 aa7.63□□□□□ -1.19
LIMCH1-213ENST00000511496 PRR34Q9NV39 138 aa7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 C19orf73Q9NVV2 129 aa7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 H0Y9J4 135 aa7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 HRES1P13985 223 aa7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 PIEZO1Q92508 2521 aa7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 CMC4P56277 68 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-213ENST00000511496 CSAG1Q6PB30 78 aa7.61□□□□□ -1.19
LIMCH1-213ENST00000511496 CCDC168Q8NDH2 2452 aa7.6□□□□□ -1.19
LIMCH1-213ENST00000511496 LELP1Q5T871 98 aa7.6□□□□□ -1.19
LIMCH1-213ENST00000511496 FAM168BA1KXE4 195 aa7.6□□□□□ -1.19
LIMCH1-213ENST00000511496 ZNF706Q9Y5V0 76 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-213ENST00000511496 IGLV5-37A0A075B6J1 123 aa7.59□□□□□ -1.19
LIMCH1-213ENST00000511496 X6R8D5 127 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms