RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 C19orf73Q9NVV2 129 aa10.13□□□□□ -0.79
HLA-DQB1-209ENST00000487676 SPAG11AQ6PDA7 123 aa10.12□□□□□ -0.79
HLA-DQB1-209ENST00000487676 A0A1W2PNM2 257 aa10.1□□□□□ -0.79
HLA-DQB1-209ENST00000487676 IGLV5-48A0A075B6I7 105 aa10.1□□□□□ -0.79
HLA-DQB1-209ENST00000487676 PRLHP81277 87 aa10.1□□□□□ -0.79
HLA-DQB1-209ENST00000487676 Q8NDZ9 215 aa10.09□□□□□ -0.79
HLA-DQB1-209ENST00000487676 TP53AIP1Q9HCN2 124 aa10.08□□□□□ -0.8
HLA-DQB1-209ENST00000487676 COA5Q86WW8 74 aa10.08□□□□□ -0.8
HLA-DQB1-209ENST00000487676 LINC01556Q5JQF7 62 aa10.08□□□□□ -0.8
HLA-DQB1-209ENST00000487676 ACANP16112 2415 aa10.08□□□□□ -0.8
HLA-DQB1-209ENST00000487676 LOC101927531A0A1B0GV80 90 aa10.07□□□□□ -0.8
HLA-DQB1-209ENST00000487676 RPL37AP61513 92 aaKnown RBP10.06□□□□□ -0.8
HLA-DQB1-209ENST00000487676 KALRNO60229 2985 aa10.06□□□□□ -0.8
HLA-DQB1-209ENST00000487676 SPANXA2-OT1Q8N9U9 137 aa10.06□□□□□ -0.8
HLA-DQB1-209ENST00000487676 SERTAD4-AS1Q5TG53 156 aa10.05□□□□□ -0.8
HLA-DQB1-209ENST00000487676 H3BNG1 76 aa10.04□□□□□ -0.8
HLA-DQB1-209ENST00000487676 Q8NAQ8 132 aa10.04□□□□□ -0.8
HLA-DQB1-209ENST00000487676 IGLV9-49A0A0B4J1Y8 123 aa10.04□□□□□ -0.8
HLA-DQB1-209ENST00000487676 IGHV6-1A0A0B4J1U7 121 aa10.03□□□□□ -0.8
HLA-DQB1-209ENST00000487676 IGLV1-50A0A075B6I6 118 aa10.02□□□□□ -0.81
HLA-DQB1-209ENST00000487676 C7orf65Q6ZTY9 151 aa10.01□□□□□ -0.81
HLA-DQB1-209ENST00000487676 A8MWP4 228 aa10□□□□□ -0.81
HLA-DQB1-209ENST00000487676 SPINK6Q6UWN8 80 aa10□□□□□ -0.81
HLA-DQB1-209ENST00000487676 C15orf56Q8N910 161 aa10□□□□□ -0.81
HLA-DQB1-209ENST00000487676 DSCR10P59022 87 aa9.99□□□□□ -0.81
HLA-DQB1-209ENST00000487676 IGFL1Q6UW32 110 aa9.99□□□□□ -0.81
HLA-DQB1-209ENST00000487676 CR1P17927 2039 aa9.99□□□□□ -0.81
HLA-DQB1-209ENST00000487676 ZNF706Q9Y5V0 76 aaPredicted RBP9.98□□□□□ -0.81
HLA-DQB1-209ENST00000487676 ADGRG4Q8IZF6 3080 aa9.97□□□□□ -0.81
HLA-DQB1-209ENST00000487676 SPRR4Q96PI1 79 aa9.96□□□□□ -0.81
HLA-DQB1-209ENST00000487676 FAM168BA1KXE4 195 aa9.95□□□□□ -0.82
HLA-DQB1-209ENST00000487676 INAFM1C9JVW0 142 aa9.95□□□□□ -0.82
HLA-DQB1-209ENST00000487676 CDC42SE1Q9NRR8 79 aa9.95□□□□□ -0.82
HLA-DQB1-209ENST00000487676 LCA10Q71F78 164 aa9.94□□□□□ -0.82
HLA-DQB1-209ENST00000487676 RBM12B-AS1Q9P1G2 102 aa9.94□□□□□ -0.82
HLA-DQB1-209ENST00000487676 TACC2O95359 2948 aa9.94□□□□□ -0.82
HLA-DQB1-209ENST00000487676 MAST4O15021 2626 aa9.94□□□□□ -0.82
HLA-DQB1-209ENST00000487676 REV3LO60673 3130 aa9.93□□□□□ -0.82
HLA-DQB1-209ENST00000487676 USP24Q9UPU5 2620 aa9.93□□□□□ -0.82
HLA-DQB1-209ENST00000487676 PLA2G2DQ9UNK4 145 aa9.93□□□□□ -0.82
HLA-DQB1-209ENST00000487676 OXLD1Q5BKU9 147 aa9.92□□□□□ -0.82
HLA-DQB1-209ENST00000487676 Q8N9P0 234 aaPredicted RBP9.92□□□□□ -0.82
HLA-DQB1-209ENST00000487676 ACYP2P14621 99 aa9.91□□□□□ -0.82
HLA-DQB1-209ENST00000487676 ATRQ13535 2644 aa9.91□□□□□ -0.82
HLA-DQB1-209ENST00000487676 A0A0G2JQZ4 141 aa9.91□□□□□ -0.82
HLA-DQB1-209ENST00000487676 A0A1W2PNN7 141 aa9.91□□□□□ -0.82
HLA-DQB1-209ENST00000487676 Q5VV11 94 aa9.91□□□□□ -0.82
HLA-DQB1-209ENST00000487676 A0A1B0GU69 56 aa9.9□□□□□ -0.82
HLA-DQB1-209ENST00000487676 MOBPQ13875 183 aa9.9□□□□□ -0.82
HLA-DQB1-209ENST00000487676 ZZEF1O43149 2961 aa9.9□□□□□ -0.82
HLA-DQB1-209ENST00000487676 TLX1NBP0CAT3 122 aa9.89□□□□□ -0.83
HLA-DQB1-209ENST00000487676 C8orf87E5RJ46 101 aa9.89□□□□□ -0.83
HLA-DQB1-209ENST00000487676 Q75L30 129 aa9.88□□□□□ -0.83
HLA-DQB1-209ENST00000487676 MAP1AP78559 2803 aaPredicted RBP9.88□□□□□ -0.83
HLA-DQB1-209ENST00000487676 MGAM2Q2M2H8 2515 aa9.86□□□□□ -0.83
HLA-DQB1-209ENST00000487676 BOD1L1Q8NFC6 3051 aa9.86□□□□□ -0.83
HLA-DQB1-209ENST00000487676 C16orf90A8MZG2 172 aa9.86□□□□□ -0.83
HLA-DQB1-209ENST00000487676 ZNF292O60281 2723 aa9.85□□□□□ -0.83
HLA-DQB1-209ENST00000487676 SMR3AQ99954 134 aa9.84□□□□□ -0.83
HLA-DQB1-209ENST00000487676 DNAH10OSP0CZ25 163 aa9.84□□□□□ -0.83
HLA-DQB1-209ENST00000487676 LINC00588Q9Y4M8 146 aa9.84□□□□□ -0.83
HLA-DQB1-209ENST00000487676 COL6A3P12111 3177 aa9.84□□□□□ -0.83
HLA-DQB1-209ENST00000487676 CENPEQ02224 2701 aa9.82□□□□□ -0.84
HLA-DQB1-209ENST00000487676 K7ERS5 55 aa9.81□□□□□ -0.84
HLA-DQB1-209ENST00000487676 AKAP13Q12802 2813 aa9.81□□□□□ -0.84
HLA-DQB1-209ENST00000487676 MYO15AQ9UKN7 3530 aa9.81□□□□□ -0.84
HLA-DQB1-209ENST00000487676 IGLV5-37A0A075B6J1 123 aa9.81□□□□□ -0.84
HLA-DQB1-209ENST00000487676 ZCCHC13Q8WW36 166 aaKnown RBP9.81□□□□□ -0.84
HLA-DQB1-209ENST00000487676 IGLV7-46A0A075B6I9 117 aa9.8□□□□□ -0.84
HLA-DQB1-209ENST00000487676 CHD6Q8TD26 2715 aa9.79□□□□□ -0.84
HLA-DQB1-209ENST00000487676 HECTD1Q9ULT8 2610 aa9.79□□□□□ -0.84
HLA-DQB1-209ENST00000487676 TNRC18O15417 2968 aaPredicted RBP9.78□□□□□ -0.84
HLA-DQB1-209ENST00000487676 MRPL34Q9BQ48 92 aaKnown RBP9.78□□□□□ -0.84
HLA-DQB1-209ENST00000487676 PHF5AQ7RTV0 110 aaKnown RBP9.78□□□□□ -0.84
HLA-DQB1-209ENST00000487676 C8orf17Q9NRJ1 99 aa9.78□□□□□ -0.84
HLA-DQB1-209ENST00000487676 LRBAP50851 2863 aa9.76□□□□□ -0.85
HLA-DQB1-209ENST00000487676 C4orf48Q5BLP8 95 aa9.76□□□□□ -0.85
HLA-DQB1-209ENST00000487676 USP34Q70CQ2 3546 aa9.76□□□□□ -0.85
HLA-DQB1-209ENST00000487676 SPTBN5Q9NRC6 3674 aaKnown RBP9.76□□□□□ -0.85
HLA-DQB1-209ENST00000487676 GCN1Q92616 2671 aaKnown RBP9.76□□□□□ -0.85
HLA-DQB1-209ENST00000487676 LINC01558Q9Y6Z2 57 aa9.75□□□□□ -0.85
HLA-DQB1-209ENST00000487676 SPRR1AP35321 89 aa9.73□□□□□ -0.85
HLA-DQB1-209ENST00000487676 LCE6AA0A183 80 aa9.73□□□□□ -0.85
HLA-DQB1-209ENST00000487676 CIRBP-AS1Q8TBR5 109 aa9.73□□□□□ -0.85
HLA-DQB1-209ENST00000487676 DMXL2Q8TDJ6 3036 aa9.73□□□□□ -0.85
HLA-DQB1-209ENST00000487676 FLNAP21333 2647 aaKnown RBP9.72□□□□□ -0.85
HLA-DQB1-209ENST00000487676 UQCR11O14957 56 aa9.72□□□□□ -0.85
HLA-DQB1-209ENST00000487676 RETNLBQ9BQ08 111 aa9.72□□□□□ -0.85
HLA-DQB1-209ENST00000487676 TNP2Q05952 138 aa9.71□□□□□ -0.85
HLA-DQB1-209ENST00000487676 CNBPP62633 177 aaKnown RBP9.7□□□□□ -0.86
HLA-DQB1-209ENST00000487676 CFAP47Q6ZTR5 3102 aa9.69□□□□□ -0.86
HLA-DQB1-209ENST00000487676 A0A1B0GVX0 72 aa9.69□□□□□ -0.86
HLA-DQB1-209ENST00000487676 MDFIQ99750 246 aa9.67□□□□□ -0.86
HLA-DQB1-209ENST00000487676 CHTF8P0CG12 524 aa9.67□□□□□ -0.86
HLA-DQB1-209ENST00000487676 EYSQ5T1H1 3165 aa9.66□□□□□ -0.86
HLA-DQB1-209ENST00000487676 ITPR1Q14643 2758 aa9.66□□□□□ -0.86
HLA-DQB1-209ENST00000487676 SPINK1P00995 79 aa9.66□□□□□ -0.86
HLA-DQB1-209ENST00000487676 KRTAP10-3P60369 221 aa9.66□□□□□ -0.86
HLA-DQB1-209ENST00000487676 MIR22HGQ0VDD5 57 aa9.66□□□□□ -0.86
HLA-DQB1-209ENST00000487676 NBEAL2Q6ZNJ1 2754 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms