RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 DEFB131AP59861 70 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 UBE2D3P61077 147 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 NREPQ16612 68 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 KRTAP21-1Q3LI58 79 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 DEFB121Q5J5C9 76 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 Q6JHZ5 121 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 C5orf38Q86SI9 138 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 MUSTN1Q8IVN3 82 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 Q8IZM0 81 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 TMEM263Q8WUH6 116 aaKnown RBP0.6□□□□□ -2.31
SMC4-218ENST00000486711 FAM167A-AS1Q96KT0 104 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 TTTY10Q9BZA0 68 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 PRO1933Q9H354 126 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 NDUFA12Q9UI09 145 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 TIMM8BQ9Y5J9 83 aaPredicted RBP0.6□□□□□ -2.31
SMC4-218ENST00000486711 CENPFP49454 3210 aa0.6□□□□□ -2.31
SMC4-218ENST00000486711 GOLGB1Q14789 3259 aaKnown RBP0.6□□□□□ -2.31
SMC4-218ENST00000486711 UTRNP46939 3433 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 CACNA1CQ13936 2221 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 FAM236AA0A1B0GUQ0 79 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 FAM236BA0A1B0GV22 79 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 I3L2K1 104 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 MGPP08493 103 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 ARMS2P0C7Q2 107 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 COX7BP24311 80 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 LINC00158P58513 81 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 TFF3Q07654 80 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 DEFB110Q30KQ9 67 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 DEFB109BQ30KR1 87 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 AGPAT4-IT1Q9H0P7 198 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 PRO0255Q9UI72 69 aa0.59□□□□□ -2.31
SMC4-218ENST00000486711 MUC22E2RYF6 1773 aaPredicted RBP0.59□□□□□ -2.32
SMC4-218ENST00000486711 MYO7BQ6PIF6 2116 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 GVQW2A0A096LPI5 108 aaPredicted RBP0.58□□□□□ -2.32
SMC4-218ENST00000486711 TRBV7-4A0A0J9YYF1 115 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 IGIPA6NJ69 53 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 DEFB108AA8MXU0 73 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 C10orf142B7Z368 130 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 H3BSH0 61 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 CHKB-CPT1BH3BT56 60 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 SPINK4O60575 86 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 SPART-AS1P0CW21 52 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 ACYP2P14621 99 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 RPS27P42677 84 aaKnown RBP0.58□□□□□ -2.32
SMC4-218ENST00000486711 POLR2KP53803 58 aaKnown RBP0.58□□□□□ -2.32
SMC4-218ENST00000486711 HAMPP81172 84 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 WT1-ASQ06250 92 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 RPL39P5Q59GN2 51 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 SPINK6Q6UWN8 80 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 VMO1Q7Z5L0 202 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 FDCSPQ8NFU4 85 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 LINC00308Q8TCZ7 52 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 COX7B2Q8TF08 81 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 GAFA1Q96PS6 74 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 RHPN1-AS1Q9BWJ2 59 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 REV3LO60673 3130 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 KMT2DO14686 5537 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 DNAH12Q6ZR08 3092 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 PI4KAP42356 2102 aa0.58□□□□□ -2.32
SMC4-218ENST00000486711 ETDCA0A1B0GVM5 59 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 M0QY20 66 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 UQCR11O14957 56 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 LINC00694P0DN24 101 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 ESPL1Q14674 2120 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 LELP1Q5T871 98 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 COX6B2Q6YFQ2 88 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 C20orf197Q8N268 126 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 DEFB108BQ8NET1 73 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 WFDC9Q8NEX5 89 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 PROK2Q9HC23 129 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 NOP10Q9NPE3 64 aaKnown RBP0.57□□□□□ -2.32
SMC4-218ENST00000486711 CDC42SE2Q9NRR3 84 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 LINC00846Q9NV44 126 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 TOMM7Q9P0U1 55 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 CDKN2A-AS1Q9UH64 79 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 HILPDAQ9Y5L2 63 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 A0A0C4DFX4 3053 aa0.57□□□□□ -2.32
SMC4-218ENST00000486711 USP34Q70CQ2 3546 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 WDFY3Q8IZQ1 3526 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 NAV3Q8IVL0 2385 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 TNRC18O15417 2968 aaPredicted RBP0.56□□□□□ -2.32
SMC4-218ENST00000486711 IGLV5-48A0A075B6I7 105 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 DEFB131BA0A096LNP1 70 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 TRGV1A0A0A0MS02 117 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 CLPSL1A2RUU4 121 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 A8MTW9 85 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 STATHP02808 62 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 SPAG11BQ08648 103 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 WFDC2Q14508 124 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 SPAG11AQ6PDA7 123 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 ENHOQ6UWT2 76 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 DEFB123Q8N688 67 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 DPH3Q96FX2 82 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 CACNA1EQ15878 2313 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 FRAS1Q86XX4 4008 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 DNAH14Q0VDD8 3507 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 MYO7AQ13402 2215 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 USF3Q68DE3 2245 aa0.56□□□□□ -2.32
SMC4-218ENST00000486711 XIRP2A4UGR9 3374 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms