RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 JOSD1Q15040 202 aaPredicted RBP4.93□□□□□ -1.62
USP40-216ENST00000485943 KRTAP17-1Q9BYP8 105 aa4.93□□□□□ -1.62
USP40-216ENST00000485943 TMEM126AQ9H061 195 aa4.93□□□□□ -1.62
USP40-216ENST00000485943 ZNF706Q9Y5V0 76 aaPredicted RBP4.93□□□□□ -1.62
USP40-216ENST00000485943 DNAH8Q96JB1 4490 aa4.93□□□□□ -1.62
USP40-216ENST00000485943 TIMM17BO60830 172 aa4.92□□□□□ -1.62
USP40-216ENST00000485943 KRTAP10-4P60372 401 aaPredicted RBP4.92□□□□□ -1.62
USP40-216ENST00000485943 PRLHP81277 87 aa4.92□□□□□ -1.62
USP40-216ENST00000485943 LINC00518Q8N0U6 118 aa4.92□□□□□ -1.62
USP40-216ENST00000485943 TRBV10-2A0A0K0K1G8 114 aa4.91□□□□□ -1.62
USP40-216ENST00000485943 NDUFC2O95298 119 aa4.91□□□□□ -1.62
USP40-216ENST00000485943 Q6ZVH6 145 aa4.91□□□□□ -1.62
USP40-216ENST00000485943 KRTAP4-9Q9BYQ8 210 aa4.91□□□□□ -1.62
USP40-216ENST00000485943 SPANXCQ9NY87 97 aa4.91□□□□□ -1.62
USP40-216ENST00000485943 TRAV23DV6A0A075B6W5 121 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 TRBV10-3A0A0K0K1G6 114 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 A6NDN8 102 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 IFITM1P13164 125 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 KRTAP7-1Q8IUC3 87 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 LINC00308Q8TCZ7 52 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 LINC01600Q96MT4 127 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 VAMP8Q9BV40 100 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 TTTY13Q9BZ97 58 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 FAT1Q14517 4588 aa4.9□□□□□ -1.63
USP40-216ENST00000485943 DMBT1Q9UGM3 2413 aaPredicted RBP4.89□□□□□ -1.63
USP40-216ENST00000485943 VPS13BQ7Z7G8 4022 aa4.89□□□□□ -1.63
USP40-216ENST00000485943 CRYGAP11844 174 aa4.89□□□□□ -1.63
USP40-216ENST00000485943 KRTAP11-1Q8IUC1 163 aa4.89□□□□□ -1.63
USP40-216ENST00000485943 HIST1H4GQ99525 98 aa4.89□□□□□ -1.63
USP40-216ENST00000485943 C5orf52A6NGY3 159 aa4.88□□□□□ -1.63
USP40-216ENST00000485943 TYMSOSQ8TAI1 123 aa4.88□□□□□ -1.63
USP40-216ENST00000485943 SPANXDQ9BXN6 97 aa4.88□□□□□ -1.63
USP40-216ENST00000485943 PAM16Q9Y3D7 125 aa4.88□□□□□ -1.63
USP40-216ENST00000485943 TRAV13-2A0A0B4J235 113 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 SPATA45Q537H7 98 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 ADAMTSL4-AS1Q5T5F5 129 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 PCP2Q8IVA1 136 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 LINC00337Q8N6G1 96 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 PRR26Q8N8Z3 221 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 KCNQ1DNQ9H478 68 aa4.87□□□□□ -1.63
USP40-216ENST00000485943 LOC107984156A0A0G2JMH3 177 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 SLC25A20O43772 301 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 ZNF73O43830 326 aaPredicted RBP4.86□□□□□ -1.63
USP40-216ENST00000485943 SNCGO76070 127 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 VAMP3Q15836 100 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 MUSTN1Q8IVN3 82 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 ARL17AQ8IVW1 177 aa4.86□□□□□ -1.63
USP40-216ENST00000485943 SLC25A34Q6PIV7 304 aa4.85□□□□□ -1.63
USP40-216ENST00000485943 COX7BP24311 80 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 Q1RN00 199 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 LCE5AQ5TCM9 118 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 GAGE2AQ6NT46 116 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 Q8NDZ9 215 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 SMCR5Q8TEV8 140 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 RAB37Q96AX2 223 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 PPDPFQ9H3Y8 114 aa4.84□□□□□ -1.63
USP40-216ENST00000485943 NHP2Q9NX24 153 aaKnown RBP4.84□□□□□ -1.63
USP40-216ENST00000485943 IGLV6-57P01721 117 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 COX8AP10176 69 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 C9orf153Q5TBE3 101 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 SOSTDC1Q6X4U4 206 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 Q6ZRX8 168 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 C14orf144Q96I85 54 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 DHRS4-AS1Q9P1J3 65 aa4.83□□□□□ -1.64
USP40-216ENST00000485943 TSPAN13O95857 204 aa4.82□□□□□ -1.64
USP40-216ENST00000485943 TAL2Q16559 108 aa4.82□□□□□ -1.64
USP40-216ENST00000485943 FAM229BQ4G0N7 80 aa4.82□□□□□ -1.64
USP40-216ENST00000485943 C6orf99Q4VX62 202 aa4.82□□□□□ -1.64
USP40-216ENST00000485943 LITAFQ99732 161 aa4.82□□□□□ -1.64
USP40-216ENST00000485943 IGLV9-49A0A0B4J1Y8 123 aa4.81□□□□□ -1.64
USP40-216ENST00000485943 A4D1N5 150 aa4.81□□□□□ -1.64
USP40-216ENST00000485943 H7C2G1 150 aa4.81□□□□□ -1.64
USP40-216ENST00000485943 C12orf57Q99622 126 aa4.81□□□□□ -1.64
USP40-216ENST00000485943 ANAPC11Q9NYG5 84 aa4.81□□□□□ -1.64
USP40-216ENST00000485943 MYCBP2O75592 4640 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 A0A1B0GWB2 263 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 SPRR1AP35321 89 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 PRR4Q16378 134 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 LINC00304Q8N9R0 145 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 DEFB105AQ8NG35 78 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 SPRR4Q96PI1 79 aa4.8□□□□□ -1.64
USP40-216ENST00000485943 F8WEM9 126 aa4.79□□□□□ -1.64
USP40-216ENST00000485943 MT1HL1P0DM35 61 aa4.79□□□□□ -1.64
USP40-216ENST00000485943 KRTAP13-1Q8IUC0 172 aa4.79□□□□□ -1.64
USP40-216ENST00000485943 LAMTOR3Q9UHA4 124 aa4.79□□□□□ -1.64
USP40-216ENST00000485943 DLEU1O43261 78 aa4.78□□□□□ -1.64
USP40-216ENST00000485943 KRTAP1-4P0C5Y4 121 aa4.78□□□□□ -1.64
USP40-216ENST00000485943 KRTAP10-8P60410 259 aa4.78□□□□□ -1.64
USP40-216ENST00000485943 BVES-AS1Q5T3Y7 98 aa4.78□□□□□ -1.64
USP40-216ENST00000485943 A0A087X002 238 aa4.77□□□□□ -1.65
USP40-216ENST00000485943 ELOF1P60002 83 aaKnown RBP4.77□□□□□ -1.65
USP40-216ENST00000485943 MOBPQ13875 183 aa4.77□□□□□ -1.65
USP40-216ENST00000485943 SPAG11AQ6PDA7 123 aa4.77□□□□□ -1.65
USP40-216ENST00000485943 KRTAP4-11Q9BYQ6 195 aa4.77□□□□□ -1.65
USP40-216ENST00000485943 PKHD1L1Q86WI1 4243 aa4.76□□□□□ -1.65
USP40-216ENST00000485943 TRBV7-6A0A0J9YX20 115 aa4.76□□□□□ -1.65
USP40-216ENST00000485943 PSMB2P49721 201 aa4.76□□□□□ -1.65
USP40-216ENST00000485943 SMIM11BQ8TCY0 68 aa4.76□□□□□ -1.65
USP40-216ENST00000485943 HIGD1BQ9P298 99 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms