RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 HSPG2P98160 4391 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 TRBV24-1A0A075B6N3 115 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 TRBV10-1A0A0K0K1A3 114 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 DEFB130BP0DP73 79 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 DEFB130AP0DP74 79 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 RNASE3P12724 160 aaKnown RBP3.38□□□□□ -1.87
CCDC39-205ENST00000485055 LELP1Q5T871 98 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 RPL7L1Q6DKI1 246 aaKnown RBP3.38□□□□□ -1.87
CCDC39-205ENST00000485055 RPL36ALQ969Q0 106 aaKnown RBP3.38□□□□□ -1.87
CCDC39-205ENST00000485055 LITAFQ99732 161 aa3.38□□□□□ -1.87
CCDC39-205ENST00000485055 A0A087WWC5 75 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 LRCOL1A6NCL2 159 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 MGST1P10620 155 aaKnown RBP3.37□□□□□ -1.87
CCDC39-205ENST00000485055 CFAP126Q5VTH2 177 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 SFTA2Q6UW10 78 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 Q6ZSA8 131 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 ARL14EPLP0DKL9 152 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 RPP21Q9H633 154 aaKnown RBP3.37□□□□□ -1.87
CCDC39-205ENST00000485055 APOBP04114 4563 aaKnown RBP3.37□□□□□ -1.87
CCDC39-205ENST00000485055 C16orf90A8MZG2 172 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 TMEM136Q6ZRR5 245 aa3.37□□□□□ -1.87
CCDC39-205ENST00000485055 XCL1P47992 114 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 ATP5EP56381 51 aaPredicted RBP3.36□□□□□ -1.87
CCDC39-205ENST00000485055 Q6ZQT0 140 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 Q86TA4 180 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 TRGV2A0A075B6R0 118 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 A0A087WTM6 91 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 TRGV1A0A0A0MS02 117 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 IGHV3-53P01767 116 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 SMIM7Q9BQ49 75 aa3.36□□□□□ -1.87
CCDC39-205ENST00000485055 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-205ENST00000485055 A8MU10 97 aa3.35□□□□□ -1.87
CCDC39-205ENST00000485055 LINC00315P59091 139 aa3.35□□□□□ -1.87
CCDC39-205ENST00000485055 C9orf129Q5T035 196 aaKnown RBP3.35□□□□□ -1.87
CCDC39-205ENST00000485055 C14orf178Q8N769 122 aaPredicted RBP3.35□□□□□ -1.87
CCDC39-205ENST00000485055 DNAH5Q8TE73 4624 aa3.35□□□□□ -1.87
CCDC39-205ENST00000485055 CRIP1P50238 77 aa3.35□□□□□ -1.87
CCDC39-205ENST00000485055 CNFNQ9BYD5 112 aa3.35□□□□□ -1.87
CCDC39-205ENST00000485055 hDV103S1A0JD37 113 aa3.34□□□□□ -1.87
CCDC39-205ENST00000485055 Q1T7F1 81 aa3.34□□□□□ -1.87
CCDC39-205ENST00000485055 KIF25-AS1Q9Y6Z4 181 aa3.34□□□□□ -1.87
CCDC39-205ENST00000485055 Q8TAT8 98 aa3.34□□□□□ -1.87
CCDC39-205ENST00000485055 MANBALQ9NQG1 85 aa3.34□□□□□ -1.87
CCDC39-205ENST00000485055 TRGV4A0A0C4DH28 118 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 HTN3P15516 51 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 LRP1BQ9NZR2 4599 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 TRAV7A0A075B6U4 112 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 C11orf86A6NJI1 115 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP10-2P60368 255 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 UBE2D3P61077 147 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 UBE2D2P62837 147 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 MRPL35Q9NZE8 188 aaKnown RBP3.33□□□□□ -1.88
CCDC39-205ENST00000485055 TMEM141Q96I45 108 aa3.33□□□□□ -1.88
CCDC39-205ENST00000485055 M0R2N4 97 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 Q1RN00 199 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 PRR34Q9NV39 138 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 IGLV2-18A0A075B6J9 118 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 A0A0J9YY99 117 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 HCG22E2RYF7 251 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 H7C423 109 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 KRTDAPP60985 99 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 SMDT1Q9H4I9 107 aa3.32□□□□□ -1.88
CCDC39-205ENST00000485055 A0A1B0GUV1 79 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 H7BZZ5 65 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 SMIM13P0DJ93 91 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP26-1Q6PEX3 210 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 WFDC10BQ8IUB3 73 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 TYMSOSQ8TAI1 123 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 F2Z2F3 143 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 P0C880 135 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP10-4P60372 401 aaPredicted RBP3.31□□□□□ -1.88
CCDC39-205ENST00000485055 C14orf177Q52M58 125 aa3.31□□□□□ -1.88
CCDC39-205ENST00000485055 NHP2Q9NX24 153 aaKnown RBP3.31□□□□□ -1.88
CCDC39-205ENST00000485055 KANTRA0A1W2PQU2 76 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 H7C2G1 150 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 SPANXN1Q5VSR9 72 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 TRBV7-3A0A075B6L6 115 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 TRBV10-2A0A0K0K1G8 114 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP29-1A8MX34 341 aaPredicted RBP3.3□□□□□ -1.88
CCDC39-205ENST00000485055 RPL36AP83881 106 aaKnown RBP3.3□□□□□ -1.88
CCDC39-205ENST00000485055 ZNF56Q15929 161 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP4-5Q9BYR2 181 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 KIAA1109Q2LD37 5005 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 H3BQ85 93 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 HTN1P15515 57 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 KRTAP10-1P60331 282 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 ASB16-AS1Q495Z4 193 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 C9orf116Q5BN46 136 aaPredicted RBP3.3□□□□□ -1.88
CCDC39-205ENST00000485055 C20orf166-AS1Q96NR2 134 aa3.3□□□□□ -1.88
CCDC39-205ENST00000485055 TRAV13-2A0A0B4J235 113 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 ARMS2P0C7Q2 107 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 CNBPP62633 177 aaKnown RBP3.29□□□□□ -1.88
CCDC39-205ENST00000485055 FXYD6-FXYD2A0A087WZ82 144 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 TRBV6-8A0A0A6YYG3 113 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 TRBV6-5A0A0K0K1A5 114 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 GFRA4Q9GZZ7 299 aa3.29□□□□□ -1.88
CCDC39-205ENST00000485055 PCLOQ9Y6V0 5065 aa3.28□□□□□ -1.88
CCDC39-205ENST00000485055 CASC2Q6XLA1 102 aa3.28□□□□□ -1.88
CCDC39-205ENST00000485055 TEX49A0A1B0GTD5 131 aa3.28□□□□□ -1.88
CCDC39-205ENST00000485055 MIR22HGQ0VDD5 57 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms