RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 XKRY2A2RUG3 117 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 S100A9P06702 114 aaKnown RBP0.76□□□□□ -2.29
USH2A-204ENST00000481786 CDC34P49427 236 aaPredicted RBP0.76□□□□□ -2.29
USH2A-204ENST00000481786 AP3S2P59780 193 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 RAB5BP61020 215 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 GNGT1P63211 74 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 C9orf62Q8N4C0 152 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 SCGB1C1Q8TD33 95 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 CNFNQ9BYD5 112 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 SND1-IT1Q9HBX3 110 aa0.76□□□□□ -2.29
USH2A-204ENST00000481786 FAM236AA0A1B0GUQ0 79 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 FAM236BA0A1B0GV22 79 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 INMT-MINDY4F8WBC2 141 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 TCAPO15273 167 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 NDUFB6O95139 128 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 SIX6O95475 246 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 PPP1R17O96001 155 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 SPRR1BP22528 89 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 AKR1C3P42330 323 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 AKR1D1P51857 326 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 NDUFA6P56556 154 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 RAB14P61106 215 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 VBP1P61758 197 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 MT1XP80297 61 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 COX17Q14061 63 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 JOSD1Q15040 202 aaPredicted RBP0.75□□□□□ -2.29
USH2A-204ENST00000481786 KRTAP20-2Q3LI61 65 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 Q6ZRX8 168 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 BAGE2Q86Y30 109 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 CNBD2Q96M20 576 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 Q9BRP9 147 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 C2orf88Q9BSF0 95 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 LAMTOR3Q9UHA4 124 aa0.75□□□□□ -2.29
USH2A-204ENST00000481786 FAM240BA0A1B0GVZ2 78 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 MBP02144 154 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 PFN2P35080 140 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 IFI27P40305 119 aaPredicted RBP0.74□□□□□ -2.29
USH2A-204ENST00000481786 HERVK_113P63121 156 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 SEC11AP67812 179 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 STOML3Q8TAV4 291 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 ACTR3CQ9C0K3 210 aaPredicted RBP0.74□□□□□ -2.29
USH2A-204ENST00000481786 TMEM191AQ9H0A3 160 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 CYSTM1Q9H1C7 97 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 VCX3BQ9H321 246 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 VCX3AQ9NNX9 186 aa0.74□□□□□ -2.29
USH2A-204ENST00000481786 SMKR1H3BMG3 65 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 RGS5O15539 181 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 RAB5AP20339 215 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 DEFA1P59665 94 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 LSM3P62310 102 aaKnown RBP0.73□□□□□ -2.29
USH2A-204ENST00000481786 RPL39P62891 51 aaKnown RBP0.73□□□□□ -2.29
USH2A-204ENST00000481786 SERF2P84101 59 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 PDZD11Q5EBL8 140 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 KRTAP19-3Q7Z4W3 81 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 TOMM5Q8N4H5 51 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 COX7B2Q8TF08 81 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 TMEM141Q96I45 108 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 AMELXQ99217 191 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 CDKN2A-AS1Q9UH64 79 aa0.73□□□□□ -2.29
USH2A-204ENST00000481786 SYNE1Q8NF91 8797 aaKnown RBP0.72□□□□□ -2.29
USH2A-204ENST00000481786 TRBV20OR9-2A0A075B6H5 130 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 SMIM26A0A096LP01 95 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 RAB4AP20338 218 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 ATP6V0CP27449 155 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 SPINK7P58062 85 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 ZNF345Q14585 488 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 NEDD8Q15843 81 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 H1FX-AS1Q4G0G2 97 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 LUZP6Q538Z0 58 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 SFTA2Q6UW10 78 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 WFDC13Q8IUB5 93 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 AMN1Q8IY45 258 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 SMIM12Q96EX1 92 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 C20orf78Q9BR46 151 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 PSMG3Q9BT73 122 aaPredicted RBP0.72□□□□□ -2.29
USH2A-204ENST00000481786 ERG28Q9UKR5 140 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 TNFSF18Q9UNG2 199 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 HSPB11Q9Y547 144 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 R4GN34 69 aa0.72□□□□□ -2.29
USH2A-204ENST00000481786 TRBV24-1A0A075B6N3 115 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 BORCS7-ASMTA0A0B4J1R7 106 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 TRBV10-3A0A0K0K1G6 114 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 CTXND1A0A1B0GTU2 59 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 NAP1L6A6NFF2 107 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 CCDC160A6NGH7 325 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 D6R8Y8 96 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 NCR3O14931 201 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 RPL35P42766 123 aaKnown RBP0.71□□□□□ -2.3
USH2A-204ENST00000481786 KLKP1Q107X0 134 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 Q5BKY6 102 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 SOSTDC1Q6X4U4 206 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 FA2HQ7L5A8 372 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 PRR15Q8IV56 129 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 BORCS7Q96B45 105 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 SMIM3Q9BZL3 60 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 BIN3Q9NQY0 253 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 CRIPTQ9P021 101 aa0.71□□□□□ -2.3
USH2A-204ENST00000481786 TRBV10-2A0A0K0K1G8 114 aa0.7□□□□□ -2.3
USH2A-204ENST00000481786 TEX49A0A1B0GTD5 131 aa0.7□□□□□ -2.3
USH2A-204ENST00000481786 LINC00862A6NCI5 91 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms