RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 AMELXQ99217 191 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 XAGE1AQ9HD64 81 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 KMT2DO14686 5537 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 IGLV5-37A0A075B6J1 123 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 A0A1B0GV90 55 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 HSBP1L1C9JCN9 74 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 MT2AP02795 61 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 KRTAP2-3P0C7H8 128 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 KRTDAPP60985 99 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 CKS1BP61024 79 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 PAPPA-AS1Q5QFB9 102 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 ERASQ7Z444 233 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 MAP1LC3CQ9BXW4 147 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 KRTAP2-4Q9BYR9 128 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 TOMM7Q9P0U1 55 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
USP54-211ENST00000474929 GAGE10A6NGK3 116 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 LINC01546A6NGU7 62 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 LINC01549A6NIU2 74 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 SYS1-DBNDD2H3BUS1 97 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 LEPROTL1O95214 131 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 SPATA45Q537H7 98 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 C2orf82Q6UX34 121 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 LINC01561Q8N1V8 128 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 URB1-AS1Q96HZ7 61 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 TIMM17AQ99595 171 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 KRTAP9-3Q9BYQ3 159 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 CST9LQ9H4G1 147 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 CDKN2A-AS1Q9UH64 79 aa4.23□□□□□ -1.73
USP54-211ENST00000474929 DLEU1O43261 78 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 NPSP0C0P6 89 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 C6orf226Q5I0X4 101 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 SSBP3-AS1Q7Z2R9 100 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 HIGD2AQ9BW72 106 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 TMEM126AQ9H061 195 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 PAM16Q9Y3D7 125 aa4.22□□□□□ -1.73
USP54-211ENST00000474929 IGKV2-28A0A075B6P5 120 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 C9orf92A6NGG3 77 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 IGKV2D-28P01615 120 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 KRTAP10-10P60014 251 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 RPL37P61927 97 aaKnown RBP4.21□□□□□ -1.74
USP54-211ENST00000474929 HERVK_113P63121 156 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 SEC11AP67812 179 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 PMVKQ15126 192 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 LINC01545Q5VT33 79 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 LIMD2Q9BT23 127 aa4.21□□□□□ -1.74
USP54-211ENST00000474929 A0A096LNJ9 63 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 TINCRA0A1B0GVN0 87 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 IGLV6-57P01721 117 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 HBDP02042 147 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 SPINK8P0C7L1 97 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 SLC25A34Q6PIV7 304 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 FAM19A3Q7Z5A8 133 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 BOD1L2Q8IYS8 172 aa4.2□□□□□ -1.74
USP54-211ENST00000474929 F8VRH5 84 aa4.19□□□□□ -1.74
USP54-211ENST00000474929 MT1FP04733 61 aa4.19□□□□□ -1.74
USP54-211ENST00000474929 LGALS3P17931 250 aaKnown RBP4.19□□□□□ -1.74
USP54-211ENST00000474929 CXCL5P42830 114 aa4.19□□□□□ -1.74
USP54-211ENST00000474929 Q8IZM0 81 aa4.19□□□□□ -1.74
USP54-211ENST00000474929 CBY1Q9Y3M2 126 aa4.19□□□□□ -1.74
USP54-211ENST00000474929 SMIM1B2RUZ4 78 aa4.18□□□□□ -1.74
USP54-211ENST00000474929 ATP5LO75964 103 aa4.18□□□□□ -1.74
USP54-211ENST00000474929 COX8AP10176 69 aa4.18□□□□□ -1.74
USP54-211ENST00000474929 MOBPQ13875 183 aa4.18□□□□□ -1.74
USP54-211ENST00000474929 COX7B2Q8TF08 81 aa4.18□□□□□ -1.74
USP54-211ENST00000474929 H3BRM9 83 aa4.17□□□□□ -1.74
USP54-211ENST00000474929 UBE2V1Q13404 147 aa4.17□□□□□ -1.74
USP54-211ENST00000474929 HIGD1BQ9P298 99 aa4.17□□□□□ -1.74
USP54-211ENST00000474929 IGLV5-45A0A087WSX0 123 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 A6NDN8 102 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 C11orf86A6NJI1 115 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 H0Y8G0 127 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 ZNF22P17026 224 aaPredicted RBP4.16□□□□□ -1.74
USP54-211ENST00000474929 LINC00483Q53H64 154 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 TMEM170BQ5T4T1 132 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 IFI27L1Q96BM0 104 aa4.16□□□□□ -1.74
USP54-211ENST00000474929 CHTOPQ9Y3Y2 248 aaKnown RBP4.16□□□□□ -1.74
USP54-211ENST00000474929 M0R378 163 aa4.15□□□□□ -1.75
USP54-211ENST00000474929 TAL2Q16559 108 aa4.15□□□□□ -1.75
USP54-211ENST00000474929 ZNF625Q96I27 306 aaPredicted RBP4.15□□□□□ -1.75
USP54-211ENST00000474929 IGLV9-49A0A0B4J1Y8 123 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 TMEM238C9JI98 176 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 PFN2P35080 140 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 HSD52Q0P140 79 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 C6orf99Q4VX62 202 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 BVES-AS1Q5T3Y7 98 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 LCE5AQ5TCM9 118 aa4.14□□□□□ -1.75
USP54-211ENST00000474929 TRAV12-1A0A0B4J245 112 aa4.13□□□□□ -1.75
USP54-211ENST00000474929 IGLV5-39A0A0G2JS06 123 aa4.13□□□□□ -1.75
USP54-211ENST00000474929 PLNP26678 52 aa4.13□□□□□ -1.75
USP54-211ENST00000474929 RPL24P83731 157 aaKnown RBP4.13□□□□□ -1.75
USP54-211ENST00000474929 GTF2H5Q6ZYL4 71 aa4.13□□□□□ -1.75
USP54-211ENST00000474929 TRBV20-1A0A075B6N2 111 aa4.12□□□□□ -1.75
USP54-211ENST00000474929 A0A0U1RRA0 63 aa4.12□□□□□ -1.75
USP54-211ENST00000474929 HINT1P49773 126 aaPredicted RBP4.12□□□□□ -1.75
USP54-211ENST00000474929 BATFQ16520 125 aa4.12□□□□□ -1.75
USP54-211ENST00000474929 TMEM223A0PJW6 202 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 TAX1BP3O14907 124 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 DPM2O94777 84 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 IGKCP01834 107 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms