RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 FAM19A1Q7Z5A9 133 aa11.26□□□□□ -0.61
COL7A1-207ENST00000467985 PRO1933Q9H354 126 aa11.26□□□□□ -0.61
COL7A1-207ENST00000467985 SPANXB1Q9NS25 103 aaPredicted RBP11.26□□□□□ -0.61
COL7A1-207ENST00000467985 M0R378 163 aa11.25□□□□□ -0.61
COL7A1-207ENST00000467985 PRR4Q16378 134 aa11.25□□□□□ -0.61
COL7A1-207ENST00000467985 Q8NDZ9 215 aa11.25□□□□□ -0.61
COL7A1-207ENST00000467985 PRLHP81277 87 aa11.24□□□□□ -0.61
COL7A1-207ENST00000467985 HIGD1BQ9P298 99 aa11.24□□□□□ -0.61
COL7A1-207ENST00000467985 SOSTDC1Q6X4U4 206 aa11.23□□□□□ -0.61
COL7A1-207ENST00000467985 LOC107984156A0A0G2JMH3 177 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 TSTD3H0UI37 97 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 NCR3O14931 201 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 C2orf91Q6ZV80 131 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 MUSTN1Q8IVN3 82 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 ARL17AQ8IVW1 177 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 ANAPC11Q9NYG5 84 aa11.22□□□□□ -0.61
COL7A1-207ENST00000467985 TSPAN13O95857 204 aa11.21□□□□□ -0.61
COL7A1-207ENST00000467985 LINC00518Q8N0U6 118 aa11.21□□□□□ -0.61
COL7A1-207ENST00000467985 NDUFC2O95298 119 aa11.2□□□□□ -0.62
COL7A1-207ENST00000467985 KRTAP13-2Q52LG2 175 aa11.2□□□□□ -0.62
COL7A1-207ENST00000467985 EIF4EBP3O60516 100 aaPredicted RBP11.19□□□□□ -0.62
COL7A1-207ENST00000467985 S100A7L2Q5SY68 101 aa11.17□□□□□ -0.62
COL7A1-207ENST00000467985 PPDPFQ9H3Y8 114 aa11.17□□□□□ -0.62
COL7A1-207ENST00000467985 PRYO14603 147 aa11.16□□□□□ -0.62
COL7A1-207ENST00000467985 TAL2Q16559 108 aa11.16□□□□□ -0.62
COL7A1-207ENST00000467985 HIGD2AQ9BW72 106 aa11.16□□□□□ -0.62
COL7A1-207ENST00000467985 TRBV10-2A0A0K0K1G8 114 aa11.15□□□□□ -0.62
COL7A1-207ENST00000467985 HSD52Q0P140 79 aa11.15□□□□□ -0.62
COL7A1-207ENST00000467985 LINC00304Q8N9R0 145 aa11.15□□□□□ -0.62
COL7A1-207ENST00000467985 OR13C6PQ8NH95 151 aa11.15□□□□□ -0.62
COL7A1-207ENST00000467985 CTAG1AP78358 180 aa11.14□□□□□ -0.63
COL7A1-207ENST00000467985 KCNQ1DNQ9H478 68 aa11.14□□□□□ -0.63
COL7A1-207ENST00000467985 A4D1N5 150 aa11.13□□□□□ -0.63
COL7A1-207ENST00000467985 CEND1Q8N111 149 aa11.13□□□□□ -0.63
COL7A1-207ENST00000467985 LINC00337Q8N6G1 96 aa11.13□□□□□ -0.63
COL7A1-207ENST00000467985 ZNF706Q9Y5V0 76 aaPredicted RBP11.13□□□□□ -0.63
COL7A1-207ENST00000467985 TMEM238LA0A1B0GVL6 79 aa11.12□□□□□ -0.63
COL7A1-207ENST00000467985 A6NJY4 79 aa11.12□□□□□ -0.63
COL7A1-207ENST00000467985 DDTP30046 118 aa11.12□□□□□ -0.63
COL7A1-207ENST00000467985 TRBV10-3A0A0K0K1G6 114 aa11.1□□□□□ -0.63
COL7A1-207ENST00000467985 A6NDN8 102 aa11.1□□□□□ -0.63
COL7A1-207ENST00000467985 SPRR1AP35321 89 aa11.1□□□□□ -0.63
COL7A1-207ENST00000467985 SPRR4Q96PI1 79 aa11.1□□□□□ -0.63
COL7A1-207ENST00000467985 TRAV13-2A0A0B4J235 113 aa11.09□□□□□ -0.63
COL7A1-207ENST00000467985 ETDCA0A1B0GVM5 59 aa11.09□□□□□ -0.63
COL7A1-207ENST00000467985 CBY1Q9Y3M2 126 aa11.09□□□□□ -0.63
COL7A1-207ENST00000467985 RAB37Q96AX2 223 aa11.07□□□□□ -0.64
COL7A1-207ENST00000467985 KRTAP4-16G5E9R7 235 aaPredicted RBP11.06□□□□□ -0.64
COL7A1-207ENST00000467985 TRAV23DV6A0A075B6W5 121 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 M0R143 59 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 IGLV6-57P01721 117 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 FXYD2P54710 66 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 SPAG11AQ6PDA7 123 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 C3orf22Q8N5N4 141 aa11.05□□□□□ -0.64
COL7A1-207ENST00000467985 SMCR5Q8TEV8 140 aa11.03□□□□□ -0.64
COL7A1-207ENST00000467985 NHP2Q9NX24 153 aaKnown RBP11.03□□□□□ -0.64
COL7A1-207ENST00000467985 HINT1P49773 126 aaPredicted RBP11.02□□□□□ -0.65
COL7A1-207ENST00000467985 A0A0B4J2C4 111 aa11.01□□□□□ -0.65
COL7A1-207ENST00000467985 CFC1BP0CG36 223 aa11.01□□□□□ -0.65
COL7A1-207ENST00000467985 CFC1P0CG37 223 aa11.01□□□□□ -0.65
COL7A1-207ENST00000467985 RETNLBQ9BQ08 111 aa11.01□□□□□ -0.65
COL7A1-207ENST00000467985 MUC2Q02817 5179 aa11□□□□□ -0.65
COL7A1-207ENST00000467985 B5MCH6 92 aa11□□□□□ -0.65
COL7A1-207ENST00000467985 H7C2G1 150 aa11□□□□□ -0.65
COL7A1-207ENST00000467985 C4orf48Q5BLP8 95 aa11□□□□□ -0.65
COL7A1-207ENST00000467985 BVES-AS1Q5T3Y7 98 aa11□□□□□ -0.65
COL7A1-207ENST00000467985 ZNF73O43830 326 aaPredicted RBP10.99□□□□□ -0.65
COL7A1-207ENST00000467985 Q1RN00 199 aa10.99□□□□□ -0.65
COL7A1-207ENST00000467985 LINC00483Q53H64 154 aa10.98□□□□□ -0.65
COL7A1-207ENST00000467985 BATFQ16520 125 aa10.97□□□□□ -0.65
COL7A1-207ENST00000467985 PRO1854Q9UHT4 67 aa10.97□□□□□ -0.65
COL7A1-207ENST00000467985 IGLV7-46A0A075B6I9 117 aa10.96□□□□□ -0.65
COL7A1-207ENST00000467985 TPRXLQ17RH7 258 aa10.96□□□□□ -0.65
COL7A1-207ENST00000467985 Q6ZRX8 168 aa10.96□□□□□ -0.65
COL7A1-207ENST00000467985 PCP4L1A6NKN8 68 aa10.95□□□□□ -0.66
COL7A1-207ENST00000467985 K7ERJ3 54 aa10.95□□□□□ -0.66
COL7A1-207ENST00000467985 C6orf99Q4VX62 202 aa10.95□□□□□ -0.66
COL7A1-207ENST00000467985 Q8NBF4 154 aa10.95□□□□□ -0.66
COL7A1-207ENST00000467985 SMIM11BQ8TCY0 68 aa10.95□□□□□ -0.66
COL7A1-207ENST00000467985 GAGE2AQ6NT46 116 aa10.94□□□□□ -0.66
COL7A1-207ENST00000467985 Q9BRP9 147 aa10.93□□□□□ -0.66
COL7A1-207ENST00000467985 ERC2-IT1O76042 136 aa10.92□□□□□ -0.66
COL7A1-207ENST00000467985 SPINK1P00995 79 aa10.92□□□□□ -0.66
COL7A1-207ENST00000467985 COX7BP24311 80 aa10.92□□□□□ -0.66
COL7A1-207ENST00000467985 VAMP3Q15836 100 aa10.92□□□□□ -0.66
COL7A1-207ENST00000467985 CDIP1Q9H305 208 aa10.92□□□□□ -0.66
COL7A1-207ENST00000467985 A0A0U1RQV1 116 aa10.91□□□□□ -0.66
COL7A1-207ENST00000467985 A0A1B0GWB2 263 aa10.91□□□□□ -0.66
COL7A1-207ENST00000467985 FP248Q71RG6 208 aaPredicted RBP10.91□□□□□ -0.66
COL7A1-207ENST00000467985 SSBP3-AS1Q7Z2R9 100 aa10.89□□□□□ -0.67
COL7A1-207ENST00000467985 PSMB2P49721 201 aa10.88□□□□□ -0.67
COL7A1-207ENST00000467985 IGLV9-49A0A0B4J1Y8 123 aa10.87□□□□□ -0.67
COL7A1-207ENST00000467985 TRBV7-6A0A0J9YX20 115 aa10.87□□□□□ -0.67
COL7A1-207ENST00000467985 ELOF1P60002 83 aaKnown RBP10.87□□□□□ -0.67
COL7A1-207ENST00000467985 MOBPQ13875 183 aa10.87□□□□□ -0.67
COL7A1-207ENST00000467985 RPS29P62273 56 aaKnown RBP10.85□□□□□ -0.67
COL7A1-207ENST00000467985 SLC25A20O43772 301 aa10.84□□□□□ -0.67
COL7A1-207ENST00000467985 DHRS4-AS1Q9P1J3 65 aa10.84□□□□□ -0.67
COL7A1-207ENST00000467985 COX6CP09669 75 aa10.83□□□□□ -0.68
COL7A1-207ENST00000467985 TRIAP1O43715 76 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms