RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 RPL38P63173 70 aaKnown RBP0.25□□□□□ -2.37
CLK1-208ENST00000464454 LELP1Q5T871 98 aa0.25□□□□□ -2.37
CLK1-208ENST00000464454 SPTBN1Q01082 2364 aaKnown RBP0.25□□□□□ -2.37
CLK1-208ENST00000464454 TSC2P49815 1807 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 EFCAB5A4FU69 1503 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 ERICH3Q5RHP9 1530 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 DEFB131BA0A096LNP1 70 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 NDUFA4O00483 81 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 SPINK4O60575 86 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 H1FX-AS1Q4G0G2 97 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 CDKN2A-AS1Q9UH64 79 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 U3KQA8 63 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 KIF20BQ96Q89 1820 aa0.24□□□□□ -2.37
CLK1-208ENST00000464454 CICQ96RK0 1608 aaPredicted RBP0.24□□□□□ -2.37
CLK1-208ENST00000464454 UBR3Q6ZT12 1888 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 AKAP6Q13023 2319 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 SPINK1P00995 79 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 DEFB109BQ30KR1 87 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 ZNF292O60281 2723 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 TIAM2Q8IVF5 1701 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 RNF17Q9BXT8 1623 aaKnown RBP0.23□□□□□ -2.37
CLK1-208ENST00000464454 TNXBP22105 4242 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 GVINP1Q7Z2Y8 2422 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 LMTK2Q8IWU2 1503 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 VWFP04275 2813 aa0.23□□□□□ -2.37
CLK1-208ENST00000464454 KMT2DO14686 5537 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 IGSF10Q6WRI0 2623 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 FSIP2Q5CZC0 6907 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 ZC3H13Q5T200 1668 aaKnown RBP0.22□□□□□ -2.37
CLK1-208ENST00000464454 LYNX1G3V0Z9 82 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 C3orf79P0CE67 100 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 DEFB114Q30KQ6 69 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 APLNQ9ULZ1 77 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 PKDREJQ9NTG1 2253 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 RALGAPBQ86X10 1494 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 BCORQ6W2J9 1755 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 FAT2Q9NYQ8 4349 aa0.22□□□□□ -2.37
CLK1-208ENST00000464454 BSNQ9UPA5 3926 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 PARP4Q9UKK3 1724 aaKnown RBP0.21□□□□□ -2.38
CLK1-208ENST00000464454 OTOGQ6ZRI0 2925 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 NHSQ6T4R5 1651 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 NCOR2Q9Y618 2525 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 ABCA9Q8IUA7 1624 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 MADDQ8WXG6 1647 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 NDUFA3O95167 84 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 ATXN8Q156A1 80 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 CNOT1A5YKK6 2376 aaKnown RBP0.21□□□□□ -2.38
CLK1-208ENST00000464454 ITSN1Q15811 1721 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 HFM1A2PYH4 1435 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 CFAP43Q8NDM7 1665 aa0.21□□□□□ -2.38
CLK1-208ENST00000464454 SYNE2Q8WXH0 6885 aaKnown RBP0.2□□□□□ -2.38
CLK1-208ENST00000464454 HUWE1Q7Z6Z7 4374 aaKnown RBP0.2□□□□□ -2.38
CLK1-208ENST00000464454 H0YAA0 97 aa0.2□□□□□ -2.38
CLK1-208ENST00000464454 KLK9Q2XQG4 91 aa0.2□□□□□ -2.38
CLK1-208ENST00000464454 HILPDAQ9Y5L2 63 aa0.2□□□□□ -2.38
CLK1-208ENST00000464454 PRKDCP78527 4128 aaKnown RBP0.2□□□□□ -2.38
CLK1-208ENST00000464454 NESP48681 1621 aa0.2□□□□□ -2.38
CLK1-208ENST00000464454 PLXNC1O60486 1568 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 INO80Q9ULG1 1556 aaPredicted RBP0.19□□□□□ -2.38
CLK1-208ENST00000464454 REV3LO60673 3130 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 PRM1P04553 51 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 ENHOQ6UWT2 76 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 WFDC13Q8IUB5 93 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 MROH1Q8NDA8 1641 aa0.19□□□□□ -2.38
CLK1-208ENST00000464454 TNRC6CQ9HCJ0 1690 aaKnown RBP0.18□□□□□ -2.38
CLK1-208ENST00000464454 CHD6Q8TD26 2715 aa0.18□□□□□ -2.38
CLK1-208ENST00000464454 DEPDC5O75140 1603 aa0.18□□□□□ -2.38
CLK1-208ENST00000464454 LPAP08519 4548 aa0.18□□□□□ -2.38
CLK1-208ENST00000464454 H3BVH4 76 aa0.18□□□□□ -2.38
CLK1-208ENST00000464454 SPRR2DP22532 72 aa0.17□□□□□ -2.38
CLK1-208ENST00000464454 CRIP1P50238 77 aa0.17□□□□□ -2.38
CLK1-208ENST00000464454 RICTORQ6R327 1708 aa0.17□□□□□ -2.38
CLK1-208ENST00000464454 PRO3102Q9H379 93 aa0.17□□□□□ -2.38
CLK1-208ENST00000464454 PLCH1Q4KWH8 1693 aa0.17□□□□□ -2.38
CLK1-208ENST00000464454 COL14A1Q05707 1796 aaKnown RBP0.17□□□□□ -2.38
CLK1-208ENST00000464454 THOC2Q8NI27 1593 aaKnown RBP0.16□□□□□ -2.38
CLK1-208ENST00000464454 ETDCA0A1B0GVM5 59 aa0.16□□□□□ -2.38
CLK1-208ENST00000464454 MRPL33O75394 65 aaKnown RBP0.16□□□□□ -2.38
CLK1-208ENST00000464454 UBL5Q9BZL1 73 aa0.16□□□□□ -2.38
CLK1-208ENST00000464454 ABCC6O95255 1503 aa0.16□□□□□ -2.38
CLK1-208ENST00000464454 MYCBP2O75592 4640 aa0.16□□□□□ -2.38
CLK1-208ENST00000464454 UNC79Q9P2D8 2635 aa0.16□□□□□ -2.38
CLK1-208ENST00000464454 WNK2Q9Y3S1 2297 aa0.15□□□□□ -2.39
CLK1-208ENST00000464454 LINC00158P58513 81 aa0.15□□□□□ -2.39
CLK1-208ENST00000464454 KMT2AQ03164 3969 aa0.15□□□□□ -2.39
CLK1-208ENST00000464454 HRNRQ86YZ3 2850 aaPredicted RBP0.15□□□□□ -2.39
CLK1-208ENST00000464454 EP300Q09472 2414 aaPredicted RBP0.14□□□□□ -2.39
CLK1-208ENST00000464454 HIVEP3Q5T1R4 2406 aa0.14□□□□□ -2.39
CLK1-208ENST00000464454 ATRQ13535 2644 aa0.14□□□□□ -2.39
CLK1-208ENST00000464454 TJP1Q07157 1748 aa0.14□□□□□ -2.39
CLK1-208ENST00000464454 LINC01549A6NIU2 74 aa0.14□□□□□ -2.39
CLK1-208ENST00000464454 S100ZQ8WXG8 99 aa0.14□□□□□ -2.39
CLK1-208ENST00000464454 DMBT1Q9UGM3 2413 aaPredicted RBP0.14□□□□□ -2.39
CLK1-208ENST00000464454 CHD8Q9HCK8 2581 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 CSPG4Q6UVK1 2322 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 M0R2T5 61 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 GLI2P10070 1586 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 MAST1Q9Y2H9 1570 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 CELSR1Q9NYQ6 3014 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 CACNA1AO00555 2505 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms