RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 PRR3P79522 188 aaKnown RBP5.43□□□□□ -1.54
SYNE1-214ENST00000454018 C2orf91Q6ZV80 131 aa5.43□□□□□ -1.54
SYNE1-214ENST00000454018 LINC00518Q8N0U6 118 aa5.43□□□□□ -1.54
SYNE1-214ENST00000454018 LINC00167Q96N53 147 aa5.43□□□□□ -1.54
SYNE1-214ENST00000454018 UQCR10Q9UDW1 63 aa5.43□□□□□ -1.54
SYNE1-214ENST00000454018 HIST1H4GQ99525 98 aa5.43□□□□□ -1.54
SYNE1-214ENST00000454018 IGLV1-50A0A075B6I6 118 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 IGKV2-28A0A075B6P5 120 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 IGKV2D-28P01615 120 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 Q6ZVQ6 151 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 MUSTN1Q8IVN3 82 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 PSORS1C2Q9UIG4 136 aa5.42□□□□□ -1.54
SYNE1-214ENST00000454018 RPL37AP8A6NKH3 93 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 TAL2Q16559 108 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 S100A7L2Q5SY68 101 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 KRTAP11-1Q8IUC1 163 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 C12orf57Q99622 126 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 VPS13BQ7Z7G8 4022 aa5.41□□□□□ -1.54
SYNE1-214ENST00000454018 TRBV10-3A0A0K0K1G6 114 aa5.4□□□□□ -1.54
SYNE1-214ENST00000454018 DDTP30046 118 aa5.4□□□□□ -1.54
SYNE1-214ENST00000454018 KRTAP10-4P60372 401 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-214ENST00000454018 C1orf137Q5JT78 98 aa5.4□□□□□ -1.54
SYNE1-214ENST00000454018 LCE1DQ5T752 114 aa5.4□□□□□ -1.54
SYNE1-214ENST00000454018 SRRM2Q9UQ35 2752 aaKnown RBP5.4□□□□□ -1.54
SYNE1-214ENST00000454018 CBY1Q9Y3M2 126 aa5.4□□□□□ -1.54
SYNE1-214ENST00000454018 IGLV6-57P01721 117 aa5.39□□□□□ -1.55
SYNE1-214ENST00000454018 REG3GQ6UW15 175 aa5.39□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP17-1Q9BYP8 105 aa5.39□□□□□ -1.55
SYNE1-214ENST00000454018 TSTD3H0UI37 97 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 BCE1O60756 84 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 HNRNPA3P51991 378 aaKnown RBP5.38□□□□□ -1.55
SYNE1-214ENST00000454018 HSD52Q0P140 79 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 LINC00337Q8N6G1 96 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 TMEM126AQ9H061 195 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 KCNQ1DNQ9H478 68 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 TRAV23DV6A0A075B6W5 121 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 TRAV13-2A0A0B4J235 113 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 CEND1Q8N111 149 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 OR13C6PQ8NH95 151 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 FAM218AQ96MZ4 157 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 PRO1933Q9H354 126 aa5.38□□□□□ -1.55
SYNE1-214ENST00000454018 IGLV7-43P04211 117 aa5.37□□□□□ -1.55
SYNE1-214ENST00000454018 SPRR1AP35321 89 aa5.37□□□□□ -1.55
SYNE1-214ENST00000454018 FAT1Q14517 4588 aa5.36□□□□□ -1.55
SYNE1-214ENST00000454018 HERC2O95714 4834 aa5.36□□□□□ -1.55
SYNE1-214ENST00000454018 A6NDN8 102 aa5.36□□□□□ -1.55
SYNE1-214ENST00000454018 SEC61GP60059 68 aa5.36□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP15-1Q3LI76 137 aa5.36□□□□□ -1.55
SYNE1-214ENST00000454018 FLG2Q5D862 2391 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-214ENST00000454018 A0A0B4J2C4 111 aa5.35□□□□□ -1.55
SYNE1-214ENST00000454018 ETDCA0A1B0GVM5 59 aa5.35□□□□□ -1.55
SYNE1-214ENST00000454018 ZNF73O43830 326 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-214ENST00000454018 RPL28P46779 137 aaKnown RBP5.35□□□□□ -1.55
SYNE1-214ENST00000454018 UBE2AP49459 152 aa5.35□□□□□ -1.55
SYNE1-214ENST00000454018 FAM19A1Q7Z5A9 133 aa5.35□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP4-5Q9BYR2 181 aa5.35□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP4-16G5E9R7 235 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-214ENST00000454018 H0Y9J4 135 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 ZNF861PO60384 105 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 FXYD2P54710 66 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 SPINK6Q6UWN8 80 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP13-1Q8IUC0 172 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 KRTAP4-2Q9BYR5 136 aa5.34□□□□□ -1.55
SYNE1-214ENST00000454018 PCP4L1A6NKN8 68 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 PRLHP81277 87 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 DIRC1Q969H9 104 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 RAB37Q96AX2 223 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 CFC1BP0CG36 223 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 CFC1P0CG37 223 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 INAFM2P0DMQ5 153 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 RPL13AP40429 203 aaKnown RBP5.33□□□□□ -1.56
SYNE1-214ENST00000454018 HINT1P49773 126 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-214ENST00000454018 Q6ZRX8 168 aa5.33□□□□□ -1.56
SYNE1-214ENST00000454018 M0R143 59 aa5.32□□□□□ -1.56
SYNE1-214ENST00000454018 PKHD1L1Q86WI1 4243 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 TRBV7-6A0A0J9YX20 115 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 CTAG1AP78358 180 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 C6orf99Q4VX62 202 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 SMIM11BQ8TCY0 68 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 KRTAP4-9Q9BYQ8 210 aa5.31□□□□□ -1.56
SYNE1-214ENST00000454018 NHP2Q9NX24 153 aaKnown RBP5.31□□□□□ -1.56
SYNE1-214ENST00000454018 A0A1B0GWB2 263 aa5.3□□□□□ -1.56
SYNE1-214ENST00000454018 ELOF1P60002 83 aaKnown RBP5.3□□□□□ -1.56
SYNE1-214ENST00000454018 BVES-AS1Q5T3Y7 98 aa5.3□□□□□ -1.56
SYNE1-214ENST00000454018 HIGD2AQ9BW72 106 aa5.3□□□□□ -1.56
SYNE1-214ENST00000454018 PRO1854Q9UHT4 67 aa5.3□□□□□ -1.56
SYNE1-214ENST00000454018 COX7BP24311 80 aa5.29□□□□□ -1.56
SYNE1-214ENST00000454018 VAMP3Q15836 100 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 Q1RN00 199 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 SMCR5Q8TEV8 140 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 DHRS4-AS1Q9P1J3 65 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 H7C2G1 150 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 K7ERJ3 54 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 Q9BRP9 147 aa5.28□□□□□ -1.56
SYNE1-214ENST00000454018 ZNF706Q9Y5V0 76 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-214ENST00000454018 PRAC1Q96KF2 57 aa5.27□□□□□ -1.57
SYNE1-214ENST00000454018 OXTP01178 125 aa5.25□□□□□ -1.57
SYNE1-214ENST00000454018 KRTAP1-4P0C5Y4 121 aa5.25□□□□□ -1.57
SYNE1-214ENST00000454018 ABCA13Q86UQ4 5058 aa5.25□□□□□ -1.57
SYNE1-214ENST00000454018 SLC25A20O43772 301 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms