RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 STAB2Q8WWQ8 2551 aa6.09□□□□□ -1.43
NIPBL-202ENST00000448238 LINC00304Q8N9R0 145 aa6.09□□□□□ -1.43
NIPBL-202ENST00000448238 FAM218AQ96MZ4 157 aa6.09□□□□□ -1.43
NIPBL-202ENST00000448238 A0A096LNJ9 63 aa6.08□□□□□ -1.44
NIPBL-202ENST00000448238 GVQW2A0A096LPI5 108 aaPredicted RBP6.08□□□□□ -1.44
NIPBL-202ENST00000448238 PHF5AQ7RTV0 110 aaKnown RBP6.08□□□□□ -1.44
NIPBL-202ENST00000448238 ZNF575Q86XF7 245 aa6.08□□□□□ -1.44
NIPBL-202ENST00000448238 RTL8CO15255 209 aa6.08□□□□□ -1.44
NIPBL-202ENST00000448238 OBSCN-AS1Q96MR7 158 aa6.08□□□□□ -1.44
NIPBL-202ENST00000448238 C16orf95Q9H693 158 aa6.07□□□□□ -1.44
NIPBL-202ENST00000448238 NBEAL1Q6ZS30 2694 aa6.07□□□□□ -1.44
NIPBL-202ENST00000448238 A0A1B0GU33 70 aa6.07□□□□□ -1.44
NIPBL-202ENST00000448238 IGLV7-43P04211 117 aa6.06□□□□□ -1.44
NIPBL-202ENST00000448238 Q6ZSN1 163 aa6.06□□□□□ -1.44
NIPBL-202ENST00000448238 SPINK7P58062 85 aa6.05□□□□□ -1.44
NIPBL-202ENST00000448238 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
NIPBL-202ENST00000448238 Q6ZPA2 131 aa6.04□□□□□ -1.44
NIPBL-202ENST00000448238 TLX1NBP0CAT3 122 aa6.04□□□□□ -1.44
NIPBL-202ENST00000448238 CFAP46Q8IYW2 2715 aa6.04□□□□□ -1.44
NIPBL-202ENST00000448238 PSORS1C2Q9UIG4 136 aa6.04□□□□□ -1.44
NIPBL-202ENST00000448238 EIF4EBP3O60516 100 aaPredicted RBP6.03□□□□□ -1.44
NIPBL-202ENST00000448238 DSCR10P59022 87 aa6.03□□□□□ -1.44
NIPBL-202ENST00000448238 Q75L30 129 aa6.03□□□□□ -1.44
NIPBL-202ENST00000448238 COL4A5P29400 1685 aa6.02□□□□□ -1.45
NIPBL-202ENST00000448238 COL4A6Q14031 1691 aa6.02□□□□□ -1.45
NIPBL-202ENST00000448238 TNP2Q05952 138 aa6.01□□□□□ -1.45
NIPBL-202ENST00000448238 KCNQ1DNQ9H478 68 aa6.01□□□□□ -1.45
NIPBL-202ENST00000448238 CENPEQ02224 2701 aa6.01□□□□□ -1.45
NIPBL-202ENST00000448238 NBDYA0A0U1RRE5 68 aa6.01□□□□□ -1.45
NIPBL-202ENST00000448238 PLA2G5P39877 138 aa6□□□□□ -1.45
NIPBL-202ENST00000448238 IGLV7-46A0A075B6I9 117 aa6□□□□□ -1.45
NIPBL-202ENST00000448238 IGFL1Q6UW32 110 aa6□□□□□ -1.45
NIPBL-202ENST00000448238 ZNF861PO60384 105 aa5.99□□□□□ -1.45
NIPBL-202ENST00000448238 LINC00315P59091 139 aa5.99□□□□□ -1.45
NIPBL-202ENST00000448238 C15orf56Q8N910 161 aa5.99□□□□□ -1.45
NIPBL-202ENST00000448238 DNAH10OSP0CZ25 163 aa5.97□□□□□ -1.45
NIPBL-202ENST00000448238 C9orf92A6NGG3 77 aa5.97□□□□□ -1.45
NIPBL-202ENST00000448238 HELZ2Q9BYK8 2649 aaKnown RBP5.97□□□□□ -1.45
NIPBL-202ENST00000448238 C9orf163Q8N9P6 203 aa5.96□□□□□ -1.46
NIPBL-202ENST00000448238 PLAC4Q8WY50 150 aa5.96□□□□□ -1.46
NIPBL-202ENST00000448238 LINC00528Q8N1L1 170 aa5.95□□□□□ -1.46
NIPBL-202ENST00000448238 Q8N1X5 172 aa5.94□□□□□ -1.46
NIPBL-202ENST00000448238 CEP295Q9C0D2 2601 aa5.94□□□□□ -1.46
NIPBL-202ENST00000448238 IGLV1-50A0A075B6I6 118 aa5.94□□□□□ -1.46
NIPBL-202ENST00000448238 H1FX-AS1Q4G0G2 97 aa5.94□□□□□ -1.46
NIPBL-202ENST00000448238 LINC01558Q9Y6Z2 57 aa5.94□□□□□ -1.46
NIPBL-202ENST00000448238 CRIP3Q6Q6R5 217 aa5.93□□□□□ -1.46
NIPBL-202ENST00000448238 CSAG1Q6PB30 78 aa5.93□□□□□ -1.46
NIPBL-202ENST00000448238 Q6ZSA8 131 aa5.92□□□□□ -1.46
NIPBL-202ENST00000448238 CDSNQ15517 529 aa5.92□□□□□ -1.46
NIPBL-202ENST00000448238 M0R2T5 61 aa5.91□□□□□ -1.46
NIPBL-202ENST00000448238 ASB16-AS1Q495Z4 193 aa5.91□□□□□ -1.46
NIPBL-202ENST00000448238 Q8N377 158 aa5.9□□□□□ -1.47
NIPBL-202ENST00000448238 COL4A1P02462 1669 aa5.9□□□□□ -1.47
NIPBL-202ENST00000448238 Q8N9P0 234 aaPredicted RBP5.89□□□□□ -1.47
NIPBL-202ENST00000448238 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.89□□□□□ -1.47
NIPBL-202ENST00000448238 PRR26Q8N8Z3 221 aa5.88□□□□□ -1.47
NIPBL-202ENST00000448238 R4GN34 69 aa5.88□□□□□ -1.47
NIPBL-202ENST00000448238 ROMO1P60602 79 aa5.87□□□□□ -1.47
NIPBL-202ENST00000448238 FAM168BA1KXE4 195 aa5.87□□□□□ -1.47
NIPBL-202ENST00000448238 NOTCH1P46531 2555 aa5.86□□□□□ -1.47
NIPBL-202ENST00000448238 WWC2-AS2Q96NR7 200 aa5.86□□□□□ -1.47
NIPBL-202ENST00000448238 COL4A3Q01955 1670 aa5.86□□□□□ -1.47
NIPBL-202ENST00000448238 A0A1W2PNU3 283 aaPredicted RBP5.85□□□□□ -1.47
NIPBL-202ENST00000448238 PRR34Q9NV39 138 aa5.85□□□□□ -1.47
NIPBL-202ENST00000448238 OCR1Q9BZK8 76 aa5.84□□□□□ -1.48
NIPBL-202ENST00000448238 LITAFQ99732 161 aa5.83□□□□□ -1.48
NIPBL-202ENST00000448238 SEC61BP60468 96 aaKnown RBP5.83□□□□□ -1.48
NIPBL-202ENST00000448238 MUC22E2RYF6 1773 aaPredicted RBP5.83□□□□□ -1.48
NIPBL-202ENST00000448238 ITPR3Q14573 2671 aa5.83□□□□□ -1.48
NIPBL-202ENST00000448238 S4R3F8 94 aa5.83□□□□□ -1.48
NIPBL-202ENST00000448238 RPL37P61927 97 aaKnown RBP5.82□□□□□ -1.48
NIPBL-202ENST00000448238 SMR3AQ99954 134 aa5.82□□□□□ -1.48
NIPBL-202ENST00000448238 UNC79Q9P2D8 2635 aa5.82□□□□□ -1.48
NIPBL-202ENST00000448238 WISP2O76076 250 aa5.81□□□□□ -1.48
NIPBL-202ENST00000448238 Q8NAQ8 132 aa5.81□□□□□ -1.48
NIPBL-202ENST00000448238 COL4A4P53420 1690 aaPredicted RBP5.81□□□□□ -1.48
NIPBL-202ENST00000448238 SPRR4Q96PI1 79 aa5.8□□□□□ -1.48
NIPBL-202ENST00000448238 C19orf73Q9NVV2 129 aa5.8□□□□□ -1.48
NIPBL-202ENST00000448238 NSD1Q96L73 2696 aaPredicted RBP5.8□□□□□ -1.48
NIPBL-202ENST00000448238 PRAC1Q96KF2 57 aa5.79□□□□□ -1.48
NIPBL-202ENST00000448238 FLNBO75369 2602 aaKnown RBP5.77□□□□□ -1.49
NIPBL-202ENST00000448238 IGSF10Q6WRI0 2623 aa5.74□□□□□ -1.49
NIPBL-202ENST00000448238 A0A087WTM6 91 aa5.72□□□□□ -1.49
NIPBL-202ENST00000448238 Q5VV11 94 aa5.72□□□□□ -1.49
NIPBL-202ENST00000448238 A0A1W2PNM2 257 aa5.72□□□□□ -1.49
NIPBL-202ENST00000448238 COL6A5A8TX70 2615 aa5.71□□□□□ -1.49
NIPBL-202ENST00000448238 CNBPP62633 177 aaKnown RBP5.71□□□□□ -1.5
NIPBL-202ENST00000448238 ZCCHC13Q8WW36 166 aaKnown RBP5.7□□□□□ -1.5
NIPBL-202ENST00000448238 CHD6Q8TD26 2715 aa5.7□□□□□ -1.5
NIPBL-202ENST00000448238 A0A1W2PNN7 141 aa5.7□□□□□ -1.5
NIPBL-202ENST00000448238 FAM229BQ4G0N7 80 aa5.69□□□□□ -1.5
NIPBL-202ENST00000448238 TEP1Q99973 2627 aaKnown RBP5.69□□□□□ -1.5
NIPBL-202ENST00000448238 ANAPC11Q9NYG5 84 aa5.67□□□□□ -1.5
NIPBL-202ENST00000448238 Q5XG85 94 aa5.66□□□□□ -1.5
NIPBL-202ENST00000448238 C20orf166-AS1Q96NR2 134 aa5.66□□□□□ -1.5
NIPBL-202ENST00000448238 SMR3BP02814 79 aaPredicted RBP5.65□□□□□ -1.5
NIPBL-202ENST00000448238 KRTAP10-9P60411 292 aa5.65□□□□□ -1.51
NIPBL-202ENST00000448238 M0QZ58 72 aa5.65□□□□□ -1.51
NIPBL-202ENST00000448238 A0A0G2JQZ4 141 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms