RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CASC10Q5T4H9 136 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 LINC00846Q9NV44 126 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 ITPR1Q14643 2758 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 Q6ZVQ6 151 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 LOC400499M0QZD8 3231 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 BCE1O60756 84 aa4.87□□□□□ -1.63
SYNE1-213ENST00000448038 FAM229AH3BQW9 127 aa4.87□□□□□ -1.63
SYNE1-213ENST00000448038 SMCPP49901 116 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-213ENST00000448038 ST20-AS1Q8NBB2 130 aa4.87□□□□□ -1.63
SYNE1-213ENST00000448038 SERP2Q8N6R1 65 aa4.87□□□□□ -1.63
SYNE1-213ENST00000448038 FAM30AQ9NZY2 134 aa4.87□□□□□ -1.63
SYNE1-213ENST00000448038 A0A087WVE0 104 aa4.86□□□□□ -1.63
SYNE1-213ENST00000448038 C9orf163Q8N9P6 203 aa4.86□□□□□ -1.63
SYNE1-213ENST00000448038 IGLV1-50A0A075B6I6 118 aa4.86□□□□□ -1.63
SYNE1-213ENST00000448038 CASC2Q6XLA1 102 aa4.86□□□□□ -1.63
SYNE1-213ENST00000448038 LIMD2Q9BT23 127 aa4.86□□□□□ -1.63
SYNE1-213ENST00000448038 J3KT08 172 aa4.85□□□□□ -1.63
SYNE1-213ENST00000448038 C9orf129Q5T035 196 aaKnown RBP4.85□□□□□ -1.63
SYNE1-213ENST00000448038 KCNQ1DNQ9H478 68 aa4.85□□□□□ -1.63
SYNE1-213ENST00000448038 TLX1NBP0CAT3 122 aa4.85□□□□□ -1.63
SYNE1-213ENST00000448038 PRO0461Q9UI25 63 aa4.85□□□□□ -1.63
SYNE1-213ENST00000448038 LINC01547P58512 204 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-213ENST00000448038 SNURFQ9Y675 71 aa4.84□□□□□ -1.63
SYNE1-213ENST00000448038 Q6Q795 121 aa4.84□□□□□ -1.63
SYNE1-213ENST00000448038 LINC00476Q8WZB0 136 aa4.84□□□□□ -1.63
SYNE1-213ENST00000448038 CRYGAP11844 174 aa4.84□□□□□ -1.64
SYNE1-213ENST00000448038 APCP25054 2843 aa4.83□□□□□ -1.64
SYNE1-213ENST00000448038 MYO15AQ9UKN7 3530 aa4.83□□□□□ -1.64
SYNE1-213ENST00000448038 SVIPQ8NHG7 77 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 SPACA4Q8TDM5 124 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 HIVEP1P15822 2718 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 CNBPP62633 177 aaKnown RBP4.82□□□□□ -1.64
SYNE1-213ENST00000448038 Q8NBF4 154 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 COX7CP15954 63 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 RPL37AP61513 92 aaKnown RBP4.82□□□□□ -1.64
SYNE1-213ENST00000448038 LINC00528Q8N1L1 170 aa4.82□□□□□ -1.64
SYNE1-213ENST00000448038 Q6ZQT0 140 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 C5orf47Q569G3 176 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 Q8N9L7 120 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 TYMSOSQ8TAI1 123 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 FAM104AQ969W3 186 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 PLA2G2DQ9UNK4 145 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 TRAV7A0A075B6U4 112 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 FAM236DA0A1B0GTK5 79 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 FAM236CP0DP71 79 aa4.81□□□□□ -1.64
SYNE1-213ENST00000448038 A0A1W2PNN7 141 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 CXCL6P80162 114 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 LINC00336Q6ZUF6 198 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 LOC110117498A0A087WWA1 95 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 NDUFC1O43677 76 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 PLA2G1BP04054 148 aaKnown RBP4.8□□□□□ -1.64
SYNE1-213ENST00000448038 LINC00208Q96KT6 92 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 PRR15LQ9BU68 103 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 NBEAL2Q6ZNJ1 2754 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 HCG22E2RYF7 251 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 CDIP1Q9H305 208 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 A0A1B0GW54 56 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 RETNLBQ9BQ08 111 aa4.8□□□□□ -1.64
SYNE1-213ENST00000448038 CFAP47Q6ZTR5 3102 aa4.79□□□□□ -1.64
SYNE1-213ENST00000448038 PRR4Q16378 134 aa4.79□□□□□ -1.64
SYNE1-213ENST00000448038 CCDC179H3BU77 68 aa4.78□□□□□ -1.64
SYNE1-213ENST00000448038 TNP2Q05952 138 aa4.78□□□□□ -1.64
SYNE1-213ENST00000448038 ZNF861PO60384 105 aa4.78□□□□□ -1.64
SYNE1-213ENST00000448038 V9GYY9 64 aa4.78□□□□□ -1.64
SYNE1-213ENST00000448038 SMR3BP02814 79 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-213ENST00000448038 TRBV7-7A0A0K0K1E9 115 aa4.76□□□□□ -1.65
SYNE1-213ENST00000448038 PSORS1C2Q9UIG4 136 aa4.76□□□□□ -1.65
SYNE1-213ENST00000448038 ZANQ9Y493 2812 aa4.76□□□□□ -1.65
SYNE1-213ENST00000448038 TRBV7-4A0A0J9YYF1 115 aa4.76□□□□□ -1.65
SYNE1-213ENST00000448038 NSD1Q96L73 2696 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-213ENST00000448038 H0Y9P7 68 aa4.75□□□□□ -1.65
SYNE1-213ENST00000448038 Q8N377 158 aa4.75□□□□□ -1.65
SYNE1-213ENST00000448038 ATP5EP56381 51 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-213ENST00000448038 SMIM29Q86T20 159 aa4.74□□□□□ -1.65
SYNE1-213ENST00000448038 SPTSSBQ8NFR3 76 aa4.74□□□□□ -1.65
SYNE1-213ENST00000448038 HRNRQ86YZ3 2850 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-213ENST00000448038 IGLV7-43P04211 117 aa4.74□□□□□ -1.65
SYNE1-213ENST00000448038 hDV103S1A0JD37 113 aa4.74□□□□□ -1.65
SYNE1-213ENST00000448038 PCOTHQ58A44 107 aa4.74□□□□□ -1.65
SYNE1-213ENST00000448038 MUC3AQ02505 3323 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 IGLV5-37A0A075B6J1 123 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 IGFL1Q6UW32 110 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 ERC2-IT1O76042 136 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 NBEAL1Q6ZS30 2694 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 MPLKIPQ8TAP9 179 aa4.73□□□□□ -1.65
SYNE1-213ENST00000448038 ANAPC11Q9NYG5 84 aa4.72□□□□□ -1.65
SYNE1-213ENST00000448038 KMT2BQ9UMN6 2715 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-213ENST00000448038 TMEM254Q8TBM7 123 aa4.72□□□□□ -1.65
SYNE1-213ENST00000448038 CRYBG3Q68DQ2 2970 aa4.72□□□□□ -1.65
SYNE1-213ENST00000448038 SSBP3-AS1Q7Z2R9 100 aa4.71□□□□□ -1.66
SYNE1-213ENST00000448038 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-213ENST00000448038 LINC00313P59037 77 aa4.71□□□□□ -1.66
SYNE1-213ENST00000448038 A0A0G2JQZ4 141 aa4.71□□□□□ -1.66
SYNE1-213ENST00000448038 KRTAP1-5Q9BYS1 174 aa4.71□□□□□ -1.66
SYNE1-213ENST00000448038 IGKV2D-30A0A075B6S6 120 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 IGKV2-30P06310 120 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 CELSR2Q9HCU4 2923 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 SPRR4Q96PI1 79 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 J3QL48 77 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 C1orf64Q8NEQ6 169 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms