RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 C1orf137Q5JT78 98 aa10.64□□□□□ -0.71
LIME1-202ENST00000444951 CTAG1AP78358 180 aa10.63□□□□□ -0.71
LIME1-202ENST00000444951 FXYD2P54710 66 aa10.62□□□□□ -0.71
LIME1-202ENST00000444951 IGLV6-57P01721 117 aa10.61□□□□□ -0.71
LIME1-202ENST00000444951 REG3GQ6UW15 175 aa10.6□□□□□ -0.71
LIME1-202ENST00000444951 TMEM126AQ9H061 195 aa10.6□□□□□ -0.71
LIME1-202ENST00000444951 TRAV13-2A0A0B4J235 113 aa10.59□□□□□ -0.71
LIME1-202ENST00000444951 TMEM238LA0A1B0GVL6 79 aa10.59□□□□□ -0.71
LIME1-202ENST00000444951 A6NJY4 79 aa10.59□□□□□ -0.71
LIME1-202ENST00000444951 TRAV23DV6A0A075B6W5 121 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 PRYO14603 147 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 CFC1BP0CG36 223 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 CFC1P0CG37 223 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 HINT1P49773 126 aaPredicted RBP10.58□□□□□ -0.72
LIME1-202ENST00000444951 RAB37Q96AX2 223 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 KCNQ1DNQ9H478 68 aa10.58□□□□□ -0.72
LIME1-202ENST00000444951 RPL13AP40429 203 aaKnown RBP10.57□□□□□ -0.72
LIME1-202ENST00000444951 FAM19A1Q7Z5A9 133 aa10.57□□□□□ -0.72
LIME1-202ENST00000444951 NHP2Q9NX24 153 aaKnown RBP10.57□□□□□ -0.72
LIME1-202ENST00000444951 H7C2G1 150 aa10.56□□□□□ -0.72
LIME1-202ENST00000444951 BCE1O60756 84 aa10.56□□□□□ -0.72
LIME1-202ENST00000444951 BVES-AS1Q5T3Y7 98 aa10.56□□□□□ -0.72
LIME1-202ENST00000444951 TNXBP22105 4242 aa10.55□□□□□ -0.72
LIME1-202ENST00000444951 OXTP01178 125 aa10.55□□□□□ -0.72
LIME1-202ENST00000444951 UBE2AP49459 152 aa10.55□□□□□ -0.72
LIME1-202ENST00000444951 ETDCA0A1B0GVM5 59 aa10.54□□□□□ -0.72
LIME1-202ENST00000444951 K7ERJ3 54 aa10.54□□□□□ -0.72
LIME1-202ENST00000444951 IGLV7-43P04211 117 aa10.54□□□□□ -0.72
LIME1-202ENST00000444951 PRLHP81277 87 aa10.54□□□□□ -0.72
LIME1-202ENST00000444951 A0A0B4J2C4 111 aa10.53□□□□□ -0.72
LIME1-202ENST00000444951 M0R143 59 aa10.53□□□□□ -0.72
LIME1-202ENST00000444951 ZNF73O43830 326 aaPredicted RBP10.53□□□□□ -0.72
LIME1-202ENST00000444951 CBY1Q9Y3M2 126 aa10.53□□□□□ -0.72
LIME1-202ENST00000444951 BATFQ16520 125 aa10.52□□□□□ -0.73
LIME1-202ENST00000444951 SMIM11BQ8TCY0 68 aa10.52□□□□□ -0.73
LIME1-202ENST00000444951 PCP4L1A6NKN8 68 aa10.51□□□□□ -0.73
LIME1-202ENST00000444951 Q1RN00 199 aa10.51□□□□□ -0.73
LIME1-202ENST00000444951 C6orf99Q4VX62 202 aa10.51□□□□□ -0.73
LIME1-202ENST00000444951 DIRC1Q969H9 104 aa10.51□□□□□ -0.73
LIME1-202ENST00000444951 PRO1854Q9UHT4 67 aa10.51□□□□□ -0.73
LIME1-202ENST00000444951 SPRR1AP35321 89 aa10.5□□□□□ -0.73
LIME1-202ENST00000444951 RPL28P46779 137 aaKnown RBP10.49□□□□□ -0.73
LIME1-202ENST00000444951 KRTAP4-16G5E9R7 235 aaPredicted RBP10.48□□□□□ -0.73
LIME1-202ENST00000444951 ZNF861PO60384 105 aa10.48□□□□□ -0.73
LIME1-202ENST00000444951 B5MCH6 92 aa10.47□□□□□ -0.73
LIME1-202ENST00000444951 HIGD2AQ9BW72 106 aa10.47□□□□□ -0.73
LIME1-202ENST00000444951 MT1HL1P0DM35 61 aa10.46□□□□□ -0.73
LIME1-202ENST00000444951 COX7BP24311 80 aa10.46□□□□□ -0.73
LIME1-202ENST00000444951 A0A1B0GWB2 263 aa10.45□□□□□ -0.74
LIME1-202ENST00000444951 KRTAP13-1Q8IUC0 172 aa10.45□□□□□ -0.74
LIME1-202ENST00000444951 Q6ZRX8 168 aa10.44□□□□□ -0.74
LIME1-202ENST00000444951 SPINK6Q6UWN8 80 aa10.43□□□□□ -0.74
LIME1-202ENST00000444951 ELOF1P60002 83 aaKnown RBP10.42□□□□□ -0.74
LIME1-202ENST00000444951 VAMP3Q15836 100 aa10.42□□□□□ -0.74
LIME1-202ENST00000444951 H0Y9J4 135 aa10.41□□□□□ -0.74
LIME1-202ENST00000444951 TSPAN13O95857 204 aa10.41□□□□□ -0.74
LIME1-202ENST00000444951 PSMB2P49721 201 aa10.41□□□□□ -0.74
LIME1-202ENST00000444951 SMCR5Q8TEV8 140 aa10.41□□□□□ -0.74
LIME1-202ENST00000444951 Q9BRP9 147 aa10.41□□□□□ -0.74
LIME1-202ENST00000444951 TRBV7-6A0A0J9YX20 115 aa10.4□□□□□ -0.74
LIME1-202ENST00000444951 LRP2P98164 4655 aa10.39□□□□□ -0.75
LIME1-202ENST00000444951 ERC2-IT1O76042 136 aa10.39□□□□□ -0.75
LIME1-202ENST00000444951 TRIAP1O43715 76 aa10.38□□□□□ -0.75
LIME1-202ENST00000444951 NAA38Q9BRA0 125 aaKnown RBP10.37□□□□□ -0.75
LIME1-202ENST00000444951 SNHG12Q9BXW3 62 aa10.37□□□□□ -0.75
LIME1-202ENST00000444951 DHRS4-AS1Q9P1J3 65 aa10.37□□□□□ -0.75
LIME1-202ENST00000444951 SLC25A20O43772 301 aa10.34□□□□□ -0.75
LIME1-202ENST00000444951 LINC00575Q6W349 94 aa10.33□□□□□ -0.76
LIME1-202ENST00000444951 ST20-AS1Q8NBB2 130 aa10.33□□□□□ -0.76
LIME1-202ENST00000444951 ANAPC11Q9NYG5 84 aa10.33□□□□□ -0.76
LIME1-202ENST00000444951 RNF213Q63HN8 5207 aa10.32□□□□□ -0.76
LIME1-202ENST00000444951 H0YGX0 51 aa10.32□□□□□ -0.76
LIME1-202ENST00000444951 COX6CP09669 75 aa10.32□□□□□ -0.76
LIME1-202ENST00000444951 SCGB1C2P0DMR2 95 aa10.32□□□□□ -0.76
LIME1-202ENST00000444951 CLEC2BQ92478 149 aa10.32□□□□□ -0.76
LIME1-202ENST00000444951 hADV29S1A0JD25 119 aa10.31□□□□□ -0.76
LIME1-202ENST00000444951 ZNF706Q9Y5V0 76 aaPredicted RBP10.31□□□□□ -0.76
LIME1-202ENST00000444951 GAGE2AQ6NT46 116 aa10.3□□□□□ -0.76
LIME1-202ENST00000444951 DEFB105AQ8NG35 78 aa10.3□□□□□ -0.76
LIME1-202ENST00000444951 FAM218AQ96MZ4 157 aa10.3□□□□□ -0.76
LIME1-202ENST00000444951 SPRR4Q96PI1 79 aa10.3□□□□□ -0.76
LIME1-202ENST00000444951 H3BUT2 72 aa10.28□□□□□ -0.76
LIME1-202ENST00000444951 TAX1BP3O14907 124 aa10.28□□□□□ -0.76
LIME1-202ENST00000444951 KRTAP1-4P0C5Y4 121 aa10.27□□□□□ -0.77
LIME1-202ENST00000444951 COL5A1-AS1Q5SY13 56 aa10.27□□□□□ -0.77
LIME1-202ENST00000444951 SNCGO76070 127 aa10.26□□□□□ -0.77
LIME1-202ENST00000444951 Q6ZQY7 126 aa10.26□□□□□ -0.77
LIME1-202ENST00000444951 C9orf118A6NHY6 69 aa10.24□□□□□ -0.77
LIME1-202ENST00000444951 PRR26Q8N8Z3 221 aa10.24□□□□□ -0.77
LIME1-202ENST00000444951 LINC01600Q96MT4 127 aa10.23□□□□□ -0.77
LIME1-202ENST00000444951 A0A087X002 238 aa10.21□□□□□ -0.77
LIME1-202ENST00000444951 CRYGAP11844 174 aa10.21□□□□□ -0.77
LIME1-202ENST00000444951 TEX49A0A1B0GTD5 131 aa10.2□□□□□ -0.78
LIME1-202ENST00000444951 DNAL4O96015 105 aa10.2□□□□□ -0.78
LIME1-202ENST00000444951 LINC00483Q53H64 154 aa10.2□□□□□ -0.78
LIME1-202ENST00000444951 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.2□□□□□ -0.78
LIME1-202ENST00000444951 IGLV9-49A0A0B4J1Y8 123 aa10.19□□□□□ -0.78
LIME1-202ENST00000444951 A0A1B0GX51 115 aa10.19□□□□□ -0.78
LIME1-202ENST00000444951 TCL1BO95988 128 aa10.19□□□□□ -0.78
LIME1-202ENST00000444951 LINC01547P58512 204 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms