RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TENM1Q9UKZ4 2725 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 UMAD1C9J7I0 102 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 ARMS2P0C7Q2 107 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 DEFB124Q8NES8 71 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 Q9Y3F1 56 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 COL4A2P08572 1712 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 EFNA4P52798 201 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 PSENENQ9NZ42 101 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 TANC1Q9C0D5 1861 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 STAB2Q8WWQ8 2551 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 GNGT1P63211 74 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 COX17Q14061 63 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 PTPRDP23468 1912 aa1.18□□□□□ -2.22
CCDC88A-208ENST00000444458 TRBV30A0A0K0K1B3 111 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 PLXNA4Q9HCM2 1894 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 TRGV1A0A0A0MS02 117 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 Q5BKY6 102 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 LINC01558Q9Y6Z2 57 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 TET1Q8NFU7 2136 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 WFDC6Q9BQY6 131 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 GNG13Q9P2W3 67 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 MED12Q93074 2177 aa1.17□□□□□ -2.22
CCDC88A-208ENST00000444458 A0A087WVE0 104 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 LCE3CQ5T5A8 94 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 ZNF563Q8TA94 476 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 KRTAP2-1Q9BYU5 128 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 PDZD2O15018 2839 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 DNAH6Q9C0G6 4158 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 ZFHX4Q86UP3 3567 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 ASCC3Q8N3C0 2202 aaKnown RBP1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 HEPN1Q6WQI6 88 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 CR1P17927 2039 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 KRTAP6-3Q3LI67 103 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 DEFB107AQ8IZN7 70 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 PKDREJQ9NTG1 2253 aa1.16□□□□□ -2.22
CCDC88A-208ENST00000444458 ABCA13Q86UQ4 5058 aa1.15□□□□□ -2.22
CCDC88A-208ENST00000444458 H3BVH4 76 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 GCHFRP30047 84 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 KRTAP10-12P60413 245 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 MYH4Q9Y623 1939 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 ZNF137PP52743 207 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 KNTC1P50748 2209 aa1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 EPPK1P58107 5090 aaKnown RBP1.15□□□□□ -2.23
CCDC88A-208ENST00000444458 DEFB103AP81534 67 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 SMIM5Q71RC9 77 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 PDCD11Q14690 1871 aaKnown RBP1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 FBN2P35556 2912 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 HAMPP81172 84 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 UNQ6190/PRO20217Q6UXQ8 127 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 MYO7AQ13402 2215 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 FSIP2Q5CZC0 6907 aa1.14□□□□□ -2.23
CCDC88A-208ENST00000444458 ABCA1O95477 2261 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 A0A087WTM6 91 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 S100A3P33764 101 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 DSTQ03001 7570 aaKnown RBP1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 SPINK13Q1W4C9 94 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 A0A1B0GVY2 172 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 ATP5EP2Q5VTU8 51 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 Q6JHZ5 121 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 LINC01600Q96MT4 127 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 Q96NJ1 140 aa1.13□□□□□ -2.23
CCDC88A-208ENST00000444458 A0A1B0GUT8 65 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 PRB2P02812 416 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 MYO7BQ6PIF6 2116 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 SMIM11BQ8TCY0 68 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 DNAJC13O75165 2243 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 FRAS1Q86XX4 4008 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 DNAH7Q8WXX0 4024 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 H0Y9P7 68 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 IFI27P40305 119 aaPredicted RBP1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 DEFB121Q5J5C9 76 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 LINC00575Q6W349 94 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 KRTAP9-6A8MVA2 160 aa1.12□□□□□ -2.23
CCDC88A-208ENST00000444458 KRTAP13-4Q3LI77 160 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 C10orf113Q5VZT2 155 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 A0A087WWC5 75 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 C10orf142B7Z368 130 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 TMEM263Q8WUH6 116 aaKnown RBP1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 HILPDAQ9Y5L2 63 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 F5P12259 2224 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 TNXBP22105 4242 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 HERC2O95714 4834 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 WFDC9Q8NEX5 89 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 KALRNO60229 2985 aa1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 SPENQ96T58 3664 aaKnown RBP1.11□□□□□ -2.23
CCDC88A-208ENST00000444458 FXYD6P3P58550 94 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 Q6ZRX8 168 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 LAMA5O15230 3695 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 TRBV6-1A0A0K0K1D8 114 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 A0A0C4DFX4 3053 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 NDUFB1O75438 58 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 KRTAP12-2P59991 146 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 PLAC4Q8WY50 150 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 UBE2D4Q9Y2X8 147 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 DEFB112Q30KQ8 113 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 PROK2Q9HC23 129 aa1.1□□□□□ -2.23
CCDC88A-208ENST00000444458 LY6G6CO95867 125 aa1.09□□□□□ -2.23
CCDC88A-208ENST00000444458 OBSCNQ5VST9 7968 aa1.09□□□□□ -2.23
CCDC88A-208ENST00000444458 KMT2AQ03164 3969 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms