RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 HIVEP1P15822 2718 aa5.61□□□□□ -1.51
TMEM39A-202ENST00000438581 PRYO14603 147 aa5.61□□□□□ -1.51
TMEM39A-202ENST00000438581 CSNK1G2-AS1Q8NCQ2 148 aa5.61□□□□□ -1.51
TMEM39A-202ENST00000438581 DCHS1Q96JQ0 3298 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 TRAV23DV6A0A075B6W5 121 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 LRCOL1A6NCL2 159 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 JMJD7-PLA2G4BH0Y9G9 81 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 KRTAP10-11P60412 298 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 A8MTW9 85 aa5.6□□□□□ -1.51
TMEM39A-202ENST00000438581 LINC01554Q52M75 96 aa5.59□□□□□ -1.51
TMEM39A-202ENST00000438581 Q6ZQY7 126 aa5.59□□□□□ -1.51
TMEM39A-202ENST00000438581 SEC61BP60468 96 aaKnown RBP5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 EGFEM1PQ0D2K5 195 aa5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 COX17Q14061 63 aa5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 RELNP78509 3460 aa5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 NREPQ16612 68 aa5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 FAM19A3Q7Z5A8 133 aa5.58□□□□□ -1.52
TMEM39A-202ENST00000438581 ASH1LQ9NR48 2969 aaKnown RBP5.57□□□□□ -1.52
TMEM39A-202ENST00000438581 CELSR2Q9HCU4 2923 aa5.57□□□□□ -1.52
TMEM39A-202ENST00000438581 SMG1Q96Q15 3661 aaKnown RBP5.57□□□□□ -1.52
TMEM39A-202ENST00000438581 NF1P21359 2839 aa5.57□□□□□ -1.52
TMEM39A-202ENST00000438581 CASC2Q6XLA1 102 aa5.56□□□□□ -1.52
TMEM39A-202ENST00000438581 B9D2Q9BPU9 175 aa5.56□□□□□ -1.52
TMEM39A-202ENST00000438581 IGLV5-39A0A0G2JS06 123 aa5.56□□□□□ -1.52
TMEM39A-202ENST00000438581 K7EIL1 84 aa5.56□□□□□ -1.52
TMEM39A-202ENST00000438581 HRNRQ86YZ3 2850 aaPredicted RBP5.56□□□□□ -1.52
TMEM39A-202ENST00000438581 NDUFB1O75438 58 aa5.55□□□□□ -1.52
TMEM39A-202ENST00000438581 PDE6GP18545 87 aa5.55□□□□□ -1.52
TMEM39A-202ENST00000438581 Q75L30 129 aa5.55□□□□□ -1.52
TMEM39A-202ENST00000438581 LINC01556Q5JQF7 62 aa5.54□□□□□ -1.52
TMEM39A-202ENST00000438581 DCHS2Q6V1P9 2916 aa5.54□□□□□ -1.52
TMEM39A-202ENST00000438581 SPTSSBQ8NFR3 76 aa5.53□□□□□ -1.52
TMEM39A-202ENST00000438581 IGHV6-1A0A0B4J1U7 121 aa5.53□□□□□ -1.52
TMEM39A-202ENST00000438581 C10orf25Q5T742 122 aa5.53□□□□□ -1.52
TMEM39A-202ENST00000438581 LINC00337Q8N6G1 96 aa5.53□□□□□ -1.52
TMEM39A-202ENST00000438581 ZNF575Q86XF7 245 aa5.52□□□□□ -1.53
TMEM39A-202ENST00000438581 NIPBLQ6KC79 2804 aaeCLIP5.52□□□□□ -1.53
TMEM39A-202ENST00000438581 IGLV5-45A0A087WSX0 123 aa5.52□□□□□ -1.53
TMEM39A-202ENST00000438581 RPL28P46779 137 aaKnown RBP5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 LINC00313P59037 77 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 ENHOQ6UWT2 76 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 MUC7Q8TAX7 377 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 H3BNG1 76 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 A0A087WYN8 130 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 FBN2P35556 2912 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 C3orf84H3BNL1 204 aa5.51□□□□□ -1.53
TMEM39A-202ENST00000438581 SOSTDC1Q6X4U4 206 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 C1orf134Q5TEV5 83 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 C7orf33Q8WU49 177 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 CDC42SE1Q9NRR8 79 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 C6orf48Q9UBA6 75 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 SNURFQ9Y675 71 aa5.5□□□□□ -1.53
TMEM39A-202ENST00000438581 TNP2Q05952 138 aa5.49□□□□□ -1.53
TMEM39A-202ENST00000438581 IGLV5-52A0A0A0MRZ9 124 aa5.49□□□□□ -1.53
TMEM39A-202ENST00000438581 CHKB-CPT1BH3BT56 60 aa5.49□□□□□ -1.53
TMEM39A-202ENST00000438581 LINC00474Q9P2X8 69 aa5.49□□□□□ -1.53
TMEM39A-202ENST00000438581 ZNF706Q9Y5V0 76 aaPredicted RBP5.49□□□□□ -1.53
TMEM39A-202ENST00000438581 DHRS4-AS1Q9P1J3 65 aa5.48□□□□□ -1.53
TMEM39A-202ENST00000438581 hDV103S1A0JD37 113 aa5.48□□□□□ -1.53
TMEM39A-202ENST00000438581 BPY2O14599 106 aa5.48□□□□□ -1.53
TMEM39A-202ENST00000438581 Q8N814 137 aa5.48□□□□□ -1.53
TMEM39A-202ENST00000438581 A0A087WVE0 104 aa5.47□□□□□ -1.53
TMEM39A-202ENST00000438581 ELOF1P60002 83 aaKnown RBP5.47□□□□□ -1.53
TMEM39A-202ENST00000438581 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.47□□□□□ -1.53
TMEM39A-202ENST00000438581 SMCR5Q8TEV8 140 aa5.47□□□□□ -1.53
TMEM39A-202ENST00000438581 RETNLBQ9BQ08 111 aa5.47□□□□□ -1.53
TMEM39A-202ENST00000438581 IGLV9-49A0A0B4J1Y8 123 aa5.46□□□□□ -1.53
TMEM39A-202ENST00000438581 TMEM254Q8TBM7 123 aa5.46□□□□□ -1.53
TMEM39A-202ENST00000438581 LINC00612Q8N6U2 182 aa5.46□□□□□ -1.54
TMEM39A-202ENST00000438581 KMT2BQ9UMN6 2715 aaPredicted RBP5.46□□□□□ -1.54
TMEM39A-202ENST00000438581 A6NN06 94 aa5.46□□□□□ -1.54
TMEM39A-202ENST00000438581 HCG22E2RYF7 251 aa5.46□□□□□ -1.54
TMEM39A-202ENST00000438581 REG3GQ6UW15 175 aa5.46□□□□□ -1.54
TMEM39A-202ENST00000438581 A6NED7 52 aa5.45□□□□□ -1.54
TMEM39A-202ENST00000438581 C22orf24Q9Y442 160 aa5.45□□□□□ -1.54
TMEM39A-202ENST00000438581 PRLHP81277 87 aa5.45□□□□□ -1.54
TMEM39A-202ENST00000438581 SPINK6Q6UWN8 80 aa5.44□□□□□ -1.54
TMEM39A-202ENST00000438581 NBDYA0A0U1RRE5 68 aa5.44□□□□□ -1.54
TMEM39A-202ENST00000438581 DNAH10OSP0CZ25 163 aa5.43□□□□□ -1.54
TMEM39A-202ENST00000438581 PLA2G1BP04054 148 aaKnown RBP5.43□□□□□ -1.54
TMEM39A-202ENST00000438581 TRAV22A0A0B4J277 110 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 LINC00575Q6W349 94 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 LINC00167Q96N53 147 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 LITAFQ99732 161 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 BSNQ9UPA5 3926 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 K7ERS5 55 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 C1orf137Q5JT78 98 aa5.42□□□□□ -1.54
TMEM39A-202ENST00000438581 CYSTM1Q9H1C7 97 aa5.41□□□□□ -1.54
TMEM39A-202ENST00000438581 CHTF8P0CG12 524 aa5.41□□□□□ -1.54
TMEM39A-202ENST00000438581 TENM4Q6N022 2769 aa5.41□□□□□ -1.54
TMEM39A-202ENST00000438581 FAM218AQ96MZ4 157 aa5.41□□□□□ -1.54
TMEM39A-202ENST00000438581 MXRA5Q9NR99 2828 aa5.41□□□□□ -1.54
TMEM39A-202ENST00000438581 Q6ZRP5 223 aa5.4□□□□□ -1.54
TMEM39A-202ENST00000438581 PRR34Q9NV39 138 aa5.4□□□□□ -1.54
TMEM39A-202ENST00000438581 STAB2Q8WWQ8 2551 aa5.4□□□□□ -1.55
TMEM39A-202ENST00000438581 WWC2-AS2Q96NR7 200 aa5.39□□□□□ -1.55
TMEM39A-202ENST00000438581 GVQW2A0A096LPI5 108 aaPredicted RBP5.39□□□□□ -1.55
TMEM39A-202ENST00000438581 SVEP1Q4LDE5 3571 aa5.38□□□□□ -1.55
TMEM39A-202ENST00000438581 LINC00846Q9NV44 126 aa5.38□□□□□ -1.55
TMEM39A-202ENST00000438581 WFDC13Q8IUB5 93 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms