RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TRAV23DV6A0A075B6W5 121 aa7.59□□□□□ -1.19
LINC00339-204ENST00000434233 A0A1B0GWB2 263 aa7.59□□□□□ -1.19
LINC00339-204ENST00000434233 PLA2G1BP04054 148 aaKnown RBP7.59□□□□□ -1.19
LINC00339-204ENST00000434233 HINT1P49773 126 aaPredicted RBP7.59□□□□□ -1.19
LINC00339-204ENST00000434233 C1orf137Q5JT78 98 aa7.59□□□□□ -1.19
LINC00339-204ENST00000434233 BIRC6Q9NR09 4857 aa7.59□□□□□ -1.19
LINC00339-204ENST00000434233 RYR1P21817 5038 aa7.58□□□□□ -1.2
LINC00339-204ENST00000434233 BCE1O60756 84 aa7.58□□□□□ -1.2
LINC00339-204ENST00000434233 NHP2Q9NX24 153 aaKnown RBP7.58□□□□□ -1.2
LINC00339-204ENST00000434233 PRO1854Q9UHT4 67 aa7.58□□□□□ -1.2
LINC00339-204ENST00000434233 KRTAP4-16G5E9R7 235 aaPredicted RBP7.57□□□□□ -1.2
LINC00339-204ENST00000434233 ZNF73O43830 326 aaPredicted RBP7.57□□□□□ -1.2
LINC00339-204ENST00000434233 CDIP1Q9H305 208 aa7.57□□□□□ -1.2
LINC00339-204ENST00000434233 IGLV7-43P04211 117 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 RPL13AP40429 203 aaKnown RBP7.56□□□□□ -1.2
LINC00339-204ENST00000434233 KRTAP10-4P60372 401 aaPredicted RBP7.56□□□□□ -1.2
LINC00339-204ENST00000434233 Q5VSD8 79 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 SMIM11BQ8TCY0 68 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 KRTAP17-1Q9BYP8 105 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 HSPG2P98160 4391 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 KIAA1109Q2LD37 5005 aa7.56□□□□□ -1.2
LINC00339-204ENST00000434233 ETDCA0A1B0GVM5 59 aa7.55□□□□□ -1.2
LINC00339-204ENST00000434233 H0Y9J4 135 aa7.55□□□□□ -1.2
LINC00339-204ENST00000434233 RPL28P46779 137 aaKnown RBP7.55□□□□□ -1.2
LINC00339-204ENST00000434233 FAM19A1Q7Z5A9 133 aa7.55□□□□□ -1.2
LINC00339-204ENST00000434233 DIRC1Q969H9 104 aa7.55□□□□□ -1.2
LINC00339-204ENST00000434233 TRBV7-6A0A0J9YX20 115 aa7.54□□□□□ -1.2
LINC00339-204ENST00000434233 ZNF861PO60384 105 aa7.54□□□□□ -1.2
LINC00339-204ENST00000434233 B5MCH6 92 aa7.53□□□□□ -1.2
LINC00339-204ENST00000434233 UBE2AP49459 152 aa7.53□□□□□ -1.2
LINC00339-204ENST00000434233 C6orf99Q4VX62 202 aa7.53□□□□□ -1.2
LINC00339-204ENST00000434233 KRTAP13-1Q8IUC0 172 aa7.53□□□□□ -1.2
LINC00339-204ENST00000434233 PCP4L1A6NKN8 68 aa7.52□□□□□ -1.21
LINC00339-204ENST00000434233 H7C2G1 150 aa7.52□□□□□ -1.21
LINC00339-204ENST00000434233 K7ERJ3 54 aa7.52□□□□□ -1.21
LINC00339-204ENST00000434233 VAMP3Q15836 100 aa7.52□□□□□ -1.21
LINC00339-204ENST00000434233 FAT1Q14517 4588 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 COX7BP24311 80 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 BATFQ16520 125 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 Q1RN00 199 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 SPINK6Q6UWN8 80 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 Q6ZRX8 168 aa7.51□□□□□ -1.21
LINC00339-204ENST00000434233 INAFM2P0DMQ5 153 aa7.5□□□□□ -1.21
LINC00339-204ENST00000434233 ELOF1P60002 83 aaKnown RBP7.5□□□□□ -1.21
LINC00339-204ENST00000434233 PRLHP81277 87 aa7.5□□□□□ -1.21
LINC00339-204ENST00000434233 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
LINC00339-204ENST00000434233 SNHG12Q9BXW3 62 aa7.49□□□□□ -1.21
LINC00339-204ENST00000434233 H0YGX0 51 aa7.48□□□□□ -1.21
LINC00339-204ENST00000434233 TSPAN13O95857 204 aa7.48□□□□□ -1.21
LINC00339-204ENST00000434233 DHRS4-AS1Q9P1J3 65 aa7.48□□□□□ -1.21
LINC00339-204ENST00000434233 SMCR5Q8TEV8 140 aa7.47□□□□□ -1.21
LINC00339-204ENST00000434233 Q9BRP9 147 aa7.47□□□□□ -1.21
LINC00339-204ENST00000434233 COX6CP09669 75 aa7.46□□□□□ -1.22
LINC00339-204ENST00000434233 PSMB2P49721 201 aa7.46□□□□□ -1.22
LINC00339-204ENST00000434233 HIGD2AQ9BW72 106 aa7.46□□□□□ -1.22
LINC00339-204ENST00000434233 TRIAP1O43715 76 aa7.45□□□□□ -1.22
LINC00339-204ENST00000434233 LINC00575Q6W349 94 aa7.45□□□□□ -1.22
LINC00339-204ENST00000434233 KRTAP4-5Q9BYR2 181 aa7.45□□□□□ -1.22
LINC00339-204ENST00000434233 SLC25A20O43772 301 aa7.44□□□□□ -1.22
LINC00339-204ENST00000434233 TAX1BP3O14907 124 aa7.43□□□□□ -1.22
LINC00339-204ENST00000434233 ERC2-IT1O76042 136 aa7.43□□□□□ -1.22
LINC00339-204ENST00000434233 SCGB1C2P0DMR2 95 aa7.43□□□□□ -1.22
LINC00339-204ENST00000434233 COL5A1-AS1Q5SY13 56 aa7.43□□□□□ -1.22
LINC00339-204ENST00000434233 A0A1B0GX51 115 aa7.42□□□□□ -1.22
LINC00339-204ENST00000434233 hADV29S1A0JD25 119 aa7.42□□□□□ -1.22
LINC00339-204ENST00000434233 SNCGO76070 127 aa7.42□□□□□ -1.22
LINC00339-204ENST00000434233 C9orf118A6NHY6 69 aa7.41□□□□□ -1.22
LINC00339-204ENST00000434233 ZNF706Q9Y5V0 76 aaPredicted RBP7.41□□□□□ -1.22
LINC00339-204ENST00000434233 HERC2O95714 4834 aa7.41□□□□□ -1.22
LINC00339-204ENST00000434233 SPRR4Q96PI1 79 aa7.4□□□□□ -1.22
LINC00339-204ENST00000434233 H3BUT2 72 aa7.39□□□□□ -1.23
LINC00339-204ENST00000434233 FAM218AQ96MZ4 157 aa7.39□□□□□ -1.23
LINC00339-204ENST00000434233 NAA38Q9BRA0 125 aaKnown RBP7.39□□□□□ -1.23
LINC00339-204ENST00000434233 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.38□□□□□ -1.23
LINC00339-204ENST00000434233 CLEC2BQ92478 149 aa7.38□□□□□ -1.23
LINC00339-204ENST00000434233 KRTAP1-4P0C5Y4 121 aa7.37□□□□□ -1.23
LINC00339-204ENST00000434233 LYRM7Q5U5X0 104 aa7.37□□□□□ -1.23
LINC00339-204ENST00000434233 ST20-AS1Q8NBB2 130 aa7.37□□□□□ -1.23
LINC00339-204ENST00000434233 PKHD1L1Q86WI1 4243 aa7.37□□□□□ -1.23
LINC00339-204ENST00000434233 SPRR1BP22528 89 aa7.36□□□□□ -1.23
LINC00339-204ENST00000434233 LINC00483Q53H64 154 aa7.36□□□□□ -1.23
LINC00339-204ENST00000434233 OCIAD2Q56VL3 154 aa7.36□□□□□ -1.23
LINC00339-204ENST00000434233 GAGE2AQ6NT46 116 aa7.36□□□□□ -1.23
LINC00339-204ENST00000434233 IGLV5-48A0A075B6I7 105 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 TEX49A0A1B0GTD5 131 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 A0A1W2PPM0 123 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 LST1O00453 97 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 TRACP01848 142 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 LINC01547P58512 204 aaPredicted RBP7.35□□□□□ -1.23
LINC00339-204ENST00000434233 FAM229BQ4G0N7 80 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 Q6ZQY7 126 aa7.35□□□□□ -1.23
LINC00339-204ENST00000434233 SRRM2Q9UQ35 2752 aaKnown RBP7.35□□□□□ -1.23
LINC00339-204ENST00000434233 TRBV20-1A0A075B6N2 111 aa7.34□□□□□ -1.23
LINC00339-204ENST00000434233 TCL1BO95988 128 aa7.34□□□□□ -1.23
LINC00339-204ENST00000434233 DEFB105AQ8NG35 78 aa7.34□□□□□ -1.23
LINC00339-204ENST00000434233 LINC01600Q96MT4 127 aa7.34□□□□□ -1.23
LINC00339-204ENST00000434233 OXTP01178 125 aa7.33□□□□□ -1.24
LINC00339-204ENST00000434233 FABP2P12104 132 aa7.33□□□□□ -1.24
LINC00339-204ENST00000434233 ATXN8Q156A1 80 aa7.33□□□□□ -1.24
LINC00339-204ENST00000434233 Q8N377 158 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms