RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 PRLHP81277 87 aa7.37□□□□□ -1.23
LINC00539-202ENST00000423575 HSD52Q0P140 79 aa7.37□□□□□ -1.23
LINC00539-202ENST00000423575 FAM19A1Q7Z5A9 133 aa7.37□□□□□ -1.23
LINC00539-202ENST00000423575 KRTAP13-1Q8IUC0 172 aa7.37□□□□□ -1.23
LINC00539-202ENST00000423575 TRAV13-2A0A0B4J235 113 aa7.36□□□□□ -1.23
LINC00539-202ENST00000423575 KRTAP4-16G5E9R7 235 aaPredicted RBP7.36□□□□□ -1.23
LINC00539-202ENST00000423575 ZNF861PO60384 105 aa7.36□□□□□ -1.23
LINC00539-202ENST00000423575 UBE2AP49459 152 aa7.36□□□□□ -1.23
LINC00539-202ENST00000423575 FXYD2P54710 66 aa7.36□□□□□ -1.23
LINC00539-202ENST00000423575 LRP1Q07954 4544 aaKnown RBP7.36□□□□□ -1.23
LINC00539-202ENST00000423575 FAT3Q8TDW7 4589 aa7.35□□□□□ -1.23
LINC00539-202ENST00000423575 ETDCA0A1B0GVM5 59 aa7.35□□□□□ -1.23
LINC00539-202ENST00000423575 RPL28P46779 137 aaKnown RBP7.35□□□□□ -1.23
LINC00539-202ENST00000423575 SPINK6Q6UWN8 80 aa7.35□□□□□ -1.23
LINC00539-202ENST00000423575 ZNF73O43830 326 aaPredicted RBP7.34□□□□□ -1.23
LINC00539-202ENST00000423575 B5MCH6 92 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 TSTD3H0UI37 97 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 H0Y9J4 135 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 CFC1BP0CG36 223 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 CFC1P0CG37 223 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 RPL13AP40429 203 aaKnown RBP7.33□□□□□ -1.24
LINC00539-202ENST00000423575 DIRC1Q969H9 104 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 CBY1Q9Y3M2 126 aa7.33□□□□□ -1.24
LINC00539-202ENST00000423575 A0A0B4J2C4 111 aa7.32□□□□□ -1.24
LINC00539-202ENST00000423575 TMEM238LA0A1B0GVL6 79 aa7.32□□□□□ -1.24
LINC00539-202ENST00000423575 A6NJY4 79 aa7.32□□□□□ -1.24
LINC00539-202ENST00000423575 C6orf99Q4VX62 202 aa7.32□□□□□ -1.24
LINC00539-202ENST00000423575 CTAG1AP78358 180 aa7.31□□□□□ -1.24
LINC00539-202ENST00000423575 Q6ZRX8 168 aa7.31□□□□□ -1.24
LINC00539-202ENST00000423575 SMIM11BQ8TCY0 68 aa7.31□□□□□ -1.24
LINC00539-202ENST00000423575 HIGD2AQ9BW72 106 aa7.31□□□□□ -1.24
LINC00539-202ENST00000423575 BVES-AS1Q5T3Y7 98 aa7.3□□□□□ -1.24
LINC00539-202ENST00000423575 RAB37Q96AX2 223 aa7.3□□□□□ -1.24
LINC00539-202ENST00000423575 K7ERJ3 54 aa7.29□□□□□ -1.24
LINC00539-202ENST00000423575 SMCR5Q8TEV8 140 aa7.29□□□□□ -1.24
LINC00539-202ENST00000423575 Q9BRP9 147 aa7.29□□□□□ -1.24
LINC00539-202ENST00000423575 NHP2Q9NX24 153 aaKnown RBP7.29□□□□□ -1.24
LINC00539-202ENST00000423575 A0A1B0GWB2 263 aa7.28□□□□□ -1.24
LINC00539-202ENST00000423575 HINT1P49773 126 aaPredicted RBP7.28□□□□□ -1.24
LINC00539-202ENST00000423575 ELOF1P60002 83 aaKnown RBP7.28□□□□□ -1.24
LINC00539-202ENST00000423575 KRTAP3-3Q9BYR6 98 aa7.28□□□□□ -1.24
LINC00539-202ENST00000423575 KRTAP3-2Q9BYR7 98 aa7.28□□□□□ -1.24
LINC00539-202ENST00000423575 TRBV7-6A0A0J9YX20 115 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 H7C2G1 150 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 ERC2-IT1O76042 136 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 KRTAP1-4P0C5Y4 121 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 COX7BP24311 80 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 PRO1854Q9UHT4 67 aa7.27□□□□□ -1.25
LINC00539-202ENST00000423575 M0R143 59 aa7.26□□□□□ -1.25
LINC00539-202ENST00000423575 Q1RN00 199 aa7.24□□□□□ -1.25
LINC00539-202ENST00000423575 KRTAP29-1A8MX34 341 aaPredicted RBP7.23□□□□□ -1.25
LINC00539-202ENST00000423575 SPRR4Q96PI1 79 aa7.23□□□□□ -1.25
LINC00539-202ENST00000423575 DHRS4-AS1Q9P1J3 65 aa7.23□□□□□ -1.25
LINC00539-202ENST00000423575 OXTP01178 125 aa7.22□□□□□ -1.25
LINC00539-202ENST00000423575 LINC01600Q96MT4 127 aa7.22□□□□□ -1.25
LINC00539-202ENST00000423575 ANAPC11Q9NYG5 84 aa7.22□□□□□ -1.25
LINC00539-202ENST00000423575 TSPAN13O95857 204 aa7.21□□□□□ -1.26
LINC00539-202ENST00000423575 VAMP3Q15836 100 aa7.21□□□□□ -1.26
LINC00539-202ENST00000423575 ST20-AS1Q8NBB2 130 aa7.21□□□□□ -1.26
LINC00539-202ENST00000423575 ZNF706Q9Y5V0 76 aaPredicted RBP7.21□□□□□ -1.26
LINC00539-202ENST00000423575 DMBT1Q9UGM3 2413 aaPredicted RBP7.21□□□□□ -1.26
LINC00539-202ENST00000423575 TNXBP22105 4242 aa7.2□□□□□ -1.26
LINC00539-202ENST00000423575 TRIAP1O43715 76 aa7.2□□□□□ -1.26
LINC00539-202ENST00000423575 MT1HL1P0DM35 61 aa7.2□□□□□ -1.26
LINC00539-202ENST00000423575 LINC00575Q6W349 94 aa7.2□□□□□ -1.26
LINC00539-202ENST00000423575 PRR26Q8N8Z3 221 aa7.2□□□□□ -1.26
LINC00539-202ENST00000423575 A0A087X002 238 aa7.19□□□□□ -1.26
LINC00539-202ENST00000423575 BATFQ16520 125 aa7.19□□□□□ -1.26
LINC00539-202ENST00000423575 LINC00483Q53H64 154 aa7.18□□□□□ -1.26
LINC00539-202ENST00000423575 GAGE2AQ6NT46 116 aa7.18□□□□□ -1.26
LINC00539-202ENST00000423575 KRTAP10-8P60410 259 aa7.17□□□□□ -1.26
LINC00539-202ENST00000423575 FAM229BQ4G0N7 80 aa7.17□□□□□ -1.26
LINC00539-202ENST00000423575 FAM218AQ96MZ4 157 aa7.17□□□□□ -1.26
LINC00539-202ENST00000423575 H0YGX0 51 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 J3QL48 77 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 SLC25A20O43772 301 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 CRYGAP11844 174 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 PSMB2P49721 201 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 KRTAP13-2Q52LG2 175 aa7.16□□□□□ -1.26
LINC00539-202ENST00000423575 hADV29S1A0JD25 119 aa7.15□□□□□ -1.26
LINC00539-202ENST00000423575 LINC01547P58512 204 aaPredicted RBP7.15□□□□□ -1.26
LINC00539-202ENST00000423575 HERC1Q15751 4861 aa7.15□□□□□ -1.27
LINC00539-202ENST00000423575 SPRR1BP22528 89 aa7.14□□□□□ -1.27
LINC00539-202ENST00000423575 Q6ZQY7 126 aa7.14□□□□□ -1.27
LINC00539-202ENST00000423575 CLEC2BQ92478 149 aa7.14□□□□□ -1.27
LINC00539-202ENST00000423575 SNHG12Q9BXW3 62 aa7.14□□□□□ -1.27
LINC00539-202ENST00000423575 IGLV5-48A0A075B6I7 105 aa7.13□□□□□ -1.27
LINC00539-202ENST00000423575 PCP4L1A6NKN8 68 aa7.13□□□□□ -1.27
LINC00539-202ENST00000423575 C3orf22Q8N5N4 141 aa7.13□□□□□ -1.27
LINC00539-202ENST00000423575 DEFB105AQ8NG35 78 aa7.13□□□□□ -1.27
LINC00539-202ENST00000423575 NAA38Q9BRA0 125 aaKnown RBP7.13□□□□□ -1.27
LINC00539-202ENST00000423575 COX6CP09669 75 aa7.12□□□□□ -1.27
LINC00539-202ENST00000423575 TEX49A0A1B0GTD5 131 aa7.11□□□□□ -1.27
LINC00539-202ENST00000423575 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.11□□□□□ -1.27
LINC00539-202ENST00000423575 Q8N377 158 aa7.11□□□□□ -1.27
LINC00539-202ENST00000423575 TYMSOSQ8TAI1 123 aa7.11□□□□□ -1.27
LINC00539-202ENST00000423575 IGLV9-49A0A0B4J1Y8 123 aa7.09□□□□□ -1.27
LINC00539-202ENST00000423575 A0A1B0GX51 115 aa7.09□□□□□ -1.27
LINC00539-202ENST00000423575 TAX1BP3O14907 124 aa7.09□□□□□ -1.27
LINC00539-202ENST00000423575 SCGB1C2P0DMR2 95 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms