RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CDIP1Q9H305 208 aa7.92□□□□□ -1.14
PTPRF-205ENST00000414879 TMEM254Q8TBM7 123 aa7.91□□□□□ -1.14
PTPRF-205ENST00000414879 CCDC179H3BU77 68 aa7.91□□□□□ -1.14
PTPRF-205ENST00000414879 MYO15AQ9UKN7 3530 aa7.91□□□□□ -1.14
PTPRF-205ENST00000414879 A0A087WTM6 91 aa7.91□□□□□ -1.14
PTPRF-205ENST00000414879 DMDP11532 3685 aa7.91□□□□□ -1.14
PTPRF-205ENST00000414879 WDFY3Q8IZQ1 3526 aa7.9□□□□□ -1.15
PTPRF-205ENST00000414879 SSBP3-AS1Q7Z2R9 100 aa7.9□□□□□ -1.15
PTPRF-205ENST00000414879 C8orf87E5RJ46 101 aa7.89□□□□□ -1.15
PTPRF-205ENST00000414879 ZNF575Q86XF7 245 aa7.89□□□□□ -1.15
PTPRF-205ENST00000414879 VPS13AQ96RL7 3174 aa7.89□□□□□ -1.15
PTPRF-205ENST00000414879 TYMSOSQ8TAI1 123 aa7.89□□□□□ -1.15
PTPRF-205ENST00000414879 ITPR3Q14573 2671 aa7.88□□□□□ -1.15
PTPRF-205ENST00000414879 SPAG11AQ6PDA7 123 aa7.87□□□□□ -1.15
PTPRF-205ENST00000414879 IGLV5-37A0A075B6J1 123 aa7.87□□□□□ -1.15
PTPRF-205ENST00000414879 SERTAD4-AS1Q5TG53 156 aa7.87□□□□□ -1.15
PTPRF-205ENST00000414879 WDFY4Q6ZS81 3184 aa7.86□□□□□ -1.15
PTPRF-205ENST00000414879 FRYLO94915 3013 aa7.86□□□□□ -1.15
PTPRF-205ENST00000414879 CR1P17927 2039 aa7.86□□□□□ -1.15
PTPRF-205ENST00000414879 ZNF861PO60384 105 aa7.86□□□□□ -1.15
PTPRF-205ENST00000414879 CHTF8P0CG12 524 aa7.86□□□□□ -1.15
PTPRF-205ENST00000414879 MPLKIPQ8TAP9 179 aa7.85□□□□□ -1.15
PTPRF-205ENST00000414879 C1orf64Q8NEQ6 169 aa7.84□□□□□ -1.15
PTPRF-205ENST00000414879 SPACA4Q8TDM5 124 aa7.83□□□□□ -1.16
PTPRF-205ENST00000414879 BRK1Q8WUW1 75 aa7.83□□□□□ -1.16
PTPRF-205ENST00000414879 ST20-AS1Q8NBB2 130 aa7.83□□□□□ -1.16
PTPRF-205ENST00000414879 C9orf129Q5T035 196 aaKnown RBP7.83□□□□□ -1.16
PTPRF-205ENST00000414879 DEFB116Q30KQ4 102 aa7.83□□□□□ -1.16
PTPRF-205ENST00000414879 A0A0C4DFX4 3053 aa7.82□□□□□ -1.16
PTPRF-205ENST00000414879 LINC00313P59037 77 aa7.82□□□□□ -1.16
PTPRF-205ENST00000414879 FAM168BA1KXE4 195 aa7.81□□□□□ -1.16
PTPRF-205ENST00000414879 A8MWP4 228 aa7.81□□□□□ -1.16
PTPRF-205ENST00000414879 SMIM29Q86T20 159 aa7.81□□□□□ -1.16
PTPRF-205ENST00000414879 SPEGQ15772 3267 aa7.81□□□□□ -1.16
PTPRF-205ENST00000414879 PRR4Q16378 134 aa7.8□□□□□ -1.16
PTPRF-205ENST00000414879 CFAP46Q8IYW2 2715 aa7.79□□□□□ -1.16
PTPRF-205ENST00000414879 ERC2-IT1O76042 136 aa7.79□□□□□ -1.16
PTPRF-205ENST00000414879 USP24Q9UPU5 2620 aa7.79□□□□□ -1.16
PTPRF-205ENST00000414879 FREM2Q5SZK8 3169 aa7.79□□□□□ -1.16
PTPRF-205ENST00000414879 A6NED7 52 aa7.78□□□□□ -1.16
PTPRF-205ENST00000414879 DMXL1Q9Y485 3027 aa7.78□□□□□ -1.16
PTPRF-205ENST00000414879 MUC3AQ02505 3323 aa7.78□□□□□ -1.16
PTPRF-205ENST00000414879 TRAV22A0A0B4J277 110 aa7.77□□□□□ -1.17
PTPRF-205ENST00000414879 PCOTHQ58A44 107 aa7.76□□□□□ -1.17
PTPRF-205ENST00000414879 LOC101927531A0A1B0GV80 90 aa7.76□□□□□ -1.17
PTPRF-205ENST00000414879 MGAQ8IWI9 3026 aa7.75□□□□□ -1.17
PTPRF-205ENST00000414879 IGLV7-43P04211 117 aa7.75□□□□□ -1.17
PTPRF-205ENST00000414879 ACYP2P14621 99 aa7.75□□□□□ -1.17
PTPRF-205ENST00000414879 Q8N377 158 aa7.75□□□□□ -1.17
PTPRF-205ENST00000414879 MGAM2Q2M2H8 2515 aa7.74□□□□□ -1.17
PTPRF-205ENST00000414879 EIF4EBP3O60516 100 aaPredicted RBP7.74□□□□□ -1.17
PTPRF-205ENST00000414879 IGFL1Q6UW32 110 aa7.74□□□□□ -1.17
PTPRF-205ENST00000414879 LINC01600Q96MT4 127 aa7.74□□□□□ -1.17
PTPRF-205ENST00000414879 ATRQ13535 2644 aa7.73□□□□□ -1.17
PTPRF-205ENST00000414879 MRPL34Q9BQ48 92 aaKnown RBP7.72□□□□□ -1.17
PTPRF-205ENST00000414879 IGKV2D-30A0A075B6S6 120 aa7.72□□□□□ -1.17
PTPRF-205ENST00000414879 IGKV2-30P06310 120 aa7.72□□□□□ -1.17
PTPRF-205ENST00000414879 LINC00304Q8N9R0 145 aa7.71□□□□□ -1.17
PTPRF-205ENST00000414879 BAHCC1Q9P281 2608 aa7.71□□□□□ -1.18
PTPRF-205ENST00000414879 SPRR4Q96PI1 79 aa7.71□□□□□ -1.18
PTPRF-205ENST00000414879 A0A1W2PNN7 141 aa7.69□□□□□ -1.18
PTPRF-205ENST00000414879 PRR15Q8IV56 129 aa7.69□□□□□ -1.18
PTPRF-205ENST00000414879 PSORS1C2Q9UIG4 136 aa7.69□□□□□ -1.18
PTPRF-205ENST00000414879 CFAP54Q96N23 3096 aa7.69□□□□□ -1.18
PTPRF-205ENST00000414879 RPS28P62857 69 aaKnown RBP7.69□□□□□ -1.18
PTPRF-205ENST00000414879 RETNLBQ9BQ08 111 aa7.68□□□□□ -1.18
PTPRF-205ENST00000414879 IGLV5-48A0A075B6I7 105 aa7.68□□□□□ -1.18
PTPRF-205ENST00000414879 CD164Q04900 197 aa7.68□□□□□ -1.18
PTPRF-205ENST00000414879 ATP11AUNQ6ZP68 121 aa7.68□□□□□ -1.18
PTPRF-205ENST00000414879 MAST4O15021 2626 aa7.68□□□□□ -1.18
PTPRF-205ENST00000414879 C7orf65Q6ZTY9 151 aa7.67□□□□□ -1.18
PTPRF-205ENST00000414879 FRYQ5TBA9 3013 aa7.67□□□□□ -1.18
PTPRF-205ENST00000414879 CASC10Q5T4H9 136 aa7.67□□□□□ -1.18
PTPRF-205ENST00000414879 FAM104AQ969W3 186 aa7.67□□□□□ -1.18
PTPRF-205ENST00000414879 BSNQ9UPA5 3926 aa7.66□□□□□ -1.18
PTPRF-205ENST00000414879 A0A1B0GVX0 72 aa7.66□□□□□ -1.18
PTPRF-205ENST00000414879 SPINK1P00995 79 aa7.65□□□□□ -1.18
PTPRF-205ENST00000414879 C8orf17Q9NRJ1 99 aa7.65□□□□□ -1.18
PTPRF-205ENST00000414879 SVIPQ8NHG7 77 aa7.65□□□□□ -1.18
PTPRF-205ENST00000414879 Q96NJ1 140 aa7.65□□□□□ -1.19
PTPRF-205ENST00000414879 J3QL48 77 aa7.64□□□□□ -1.19
PTPRF-205ENST00000414879 K7EQZ3 153 aa7.64□□□□□ -1.19
PTPRF-205ENST00000414879 ZFHX4Q86UP3 3567 aa7.64□□□□□ -1.19
PTPRF-205ENST00000414879 OBSCN-AS1Q96MR7 158 aa7.64□□□□□ -1.19
PTPRF-205ENST00000414879 FAM229BQ4G0N7 80 aa7.62□□□□□ -1.19
PTPRF-205ENST00000414879 SETXQ7Z333 2677 aaKnown RBP7.61□□□□□ -1.19
PTPRF-205ENST00000414879 UNC79Q9P2D8 2635 aa7.61□□□□□ -1.19
PTPRF-205ENST00000414879 DMXL2Q8TDJ6 3036 aa7.61□□□□□ -1.19
PTPRF-205ENST00000414879 CELSR3Q9NYQ7 3312 aa7.6□□□□□ -1.19
PTPRF-205ENST00000414879 LOC400499M0QZD8 3231 aa7.6□□□□□ -1.19
PTPRF-205ENST00000414879 CENPEQ02224 2701 aa7.6□□□□□ -1.19
PTPRF-205ENST00000414879 PLAC8Q9NZF1 115 aa7.59□□□□□ -1.19
PTPRF-205ENST00000414879 IGSF10Q6WRI0 2623 aa7.59□□□□□ -1.19
PTPRF-205ENST00000414879 TNP2Q05952 138 aa7.59□□□□□ -1.19
PTPRF-205ENST00000414879 A0A1B0GU69 56 aa7.57□□□□□ -1.2
PTPRF-205ENST00000414879 A0A1W2PNM2 257 aa7.57□□□□□ -1.2
PTPRF-205ENST00000414879 SPRR1AP35321 89 aa7.57□□□□□ -1.2
PTPRF-205ENST00000414879 A0A0U1RQV1 116 aa7.57□□□□□ -1.2
PTPRF-205ENST00000414879 KLKP1Q107X0 134 aa7.57□□□□□ -1.2
PTPRF-205ENST00000414879 DSPP15924 2871 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms