RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SCGB1D4Q6XE38 83 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 C9orf163Q8N9P6 203 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 AMELXQ99217 191 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 CDC42SE2Q9NRR3 84 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 FXYD2P54710 66 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 CNBPP62633 177 aaKnown RBP4.01□□□□□ -1.77
USP40-202ENST00000409945 MRPS36P82909 103 aaKnown RBP4.01□□□□□ -1.77
USP40-202ENST00000409945 Q5VSD8 79 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 TMEM126AQ9H061 195 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 UBE2D4Q9Y2X8 147 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 H3BUT2 72 aa4□□□□□ -1.77
USP40-202ENST00000409945 J3QQQ9 107 aa4□□□□□ -1.77
USP40-202ENST00000409945 COX7A2LO14548 114 aa4□□□□□ -1.77
USP40-202ENST00000409945 LEPROTO15243 131 aa4□□□□□ -1.77
USP40-202ENST00000409945 LGALS3P17931 250 aaKnown RBP4□□□□□ -1.77
USP40-202ENST00000409945 PLEKHB2Q96CS7 222 aa4□□□□□ -1.77
USP40-202ENST00000409945 NHP2Q9NX24 153 aaKnown RBP4□□□□□ -1.77
USP40-202ENST00000409945 HSPG2P98160 4391 aa4□□□□□ -1.77
USP40-202ENST00000409945 APOBP04114 4563 aaKnown RBP3.99□□□□□ -1.77
USP40-202ENST00000409945 TRAV13-1A0A0B4J241 112 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 A0A1W2PPM0 123 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 TMEM223A0PJW6 202 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 SMR3BP02814 79 aaPredicted RBP3.99□□□□□ -1.77
USP40-202ENST00000409945 FABP2P12104 132 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 ZNF22P17026 224 aaPredicted RBP3.99□□□□□ -1.77
USP40-202ENST00000409945 KRTAP26-1Q6PEX3 210 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 Q6ZSA8 131 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 LINC00474Q9P2X8 69 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 GVQW2A0A096LPI5 108 aaPredicted RBP3.99□□□□□ -1.77
USP40-202ENST00000409945 INAFM2P0DMQ5 153 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 PFN2P35080 140 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 RAB37Q96AX2 223 aa3.99□□□□□ -1.77
USP40-202ENST00000409945 A0A0J9YXV3 536 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 K7EP34 96 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 Q6ZUT4 128 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 SCXQ7RTU7 201 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 CARD19Q96LW7 228 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 ERG28Q9UKR5 140 aa3.98□□□□□ -1.77
USP40-202ENST00000409945 A0A0J9YXY3 114 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 C8orf87E5RJ46 101 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 TSPEAR-AS2P59090 65 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 RPS28P62857 69 aaKnown RBP3.97□□□□□ -1.77
USP40-202ENST00000409945 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 C15orf56Q8N910 161 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 FAM104AQ969W3 186 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 SPCS1Q9Y6A9 102 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 UBE2D1P51668 147 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 HAMPP81172 84 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 SYCNQ0VAF6 134 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 RNASE13Q5GAN3 156 aaKnown RBP3.97□□□□□ -1.77
USP40-202ENST00000409945 CIRBP-AS1Q8TBR5 109 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 C7orf33Q8WU49 177 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 CAMK2N2Q96S95 79 aa3.97□□□□□ -1.77
USP40-202ENST00000409945 J3KT08 172 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 K7ERJ3 54 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 HERVK_113P63121 156 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 LYRM7Q5U5X0 104 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 SDIM1Q6ZPB5 146 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 FAM19A3Q7Z5A8 133 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 PCLOQ9Y6V0 5065 aa3.96□□□□□ -1.78
USP40-202ENST00000409945 LOC107984640A0A0U1RRK4 108 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 RPL37AP61513 92 aaKnown RBP3.95□□□□□ -1.78
USP40-202ENST00000409945 COX6A2Q02221 97 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 SPAG11BQ08648 103 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 C5orf38Q86SI9 138 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 IGKV2-24A0A0C4DH68 120 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 A0A0U1RQV1 116 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 A0A1B0GX51 115 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 PANO1I0J062 215 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 NDUFA1O15239 70 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 NAA38Q9BRA0 125 aaKnown RBP3.95□□□□□ -1.78
USP40-202ENST00000409945 NDUFA12Q9UI09 145 aa3.95□□□□□ -1.78
USP40-202ENST00000409945 TIMM17BO60830 172 aa3.94□□□□□ -1.78
USP40-202ENST00000409945 A0A0B4J2C4 111 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 SPACA4Q8TDM5 124 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 SPANXDQ9BXN6 97 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 SPANXCQ9NY87 97 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 CDKN2A-AS1Q9UH64 79 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 DNAH8Q96JB1 4490 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 ABCA13Q86UQ4 5058 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 IGHV3OR16-9A0A0B4J2B5 98 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 C9JAW5 83 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 F8W1H4 67 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 SPINK8P0C7L1 97 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 IFITM1P13164 125 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 CIRBPQ14011 172 aaKnown RBP3.93□□□□□ -1.78
USP40-202ENST00000409945 HRCT1Q6UXD1 115 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 COPS9Q8WXC6 57 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 LINC00526Q96FQ7 95 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 PRO1854Q9UHT4 67 aa3.93□□□□□ -1.78
USP40-202ENST00000409945 SRRM2Q9UQ35 2752 aaKnown RBP3.93□□□□□ -1.78
USP40-202ENST00000409945 TRBV20-1A0A075B6N2 111 aa3.92□□□□□ -1.78
USP40-202ENST00000409945 Q6ZRU5 148 aa3.92□□□□□ -1.78
USP40-202ENST00000409945 VPS13BQ7Z7G8 4022 aa3.92□□□□□ -1.78
USP40-202ENST00000409945 TRBV30A0A0K0K1B3 111 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 ZNF861PO60384 105 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 NDUFC2O95298 119 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 CHTF8P0CG12 524 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms