RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 OR13C6PQ8NH95 151 aa12.66□□□□□ -0.38
VSX1-203ENST00000409285 TRAV23DV6A0A075B6W5 121 aa12.65□□□□□ -0.38
VSX1-203ENST00000409285 SPRR1AP35321 89 aa12.65□□□□□ -0.38
VSX1-203ENST00000409285 PRO1854Q9UHT4 67 aa12.65□□□□□ -0.38
VSX1-203ENST00000409285 REG3GQ6UW15 175 aa12.64□□□□□ -0.39
VSX1-203ENST00000409285 Q8N1X5 172 aa12.64□□□□□ -0.39
VSX1-203ENST00000409285 SRRM2Q9UQ35 2752 aaKnown RBP12.64□□□□□ -0.39
VSX1-203ENST00000409285 RPL13AP40429 203 aaKnown RBP12.63□□□□□ -0.39
VSX1-203ENST00000409285 RPL37AP61513 92 aaKnown RBP12.62□□□□□ -0.39
VSX1-203ENST00000409285 KRTAP4-16G5E9R7 235 aaPredicted RBP12.61□□□□□ -0.39
VSX1-203ENST00000409285 H7C2G1 150 aa12.61□□□□□ -0.39
VSX1-203ENST00000409285 KRTAP17-1Q9BYP8 105 aa12.61□□□□□ -0.39
VSX1-203ENST00000409285 FAM229AH3BQW9 127 aa12.6□□□□□ -0.39
VSX1-203ENST00000409285 ZNF73O43830 326 aaPredicted RBP12.6□□□□□ -0.39
VSX1-203ENST00000409285 BCE1O60756 84 aa12.6□□□□□ -0.39
VSX1-203ENST00000409285 KRTAP10-4P60372 401 aaPredicted RBP12.59□□□□□ -0.39
VSX1-203ENST00000409285 C1orf137Q5JT78 98 aa12.59□□□□□ -0.39
VSX1-203ENST00000409285 TAX1BP3O14907 124 aa12.59□□□□□ -0.39
VSX1-203ENST00000409285 Q1RN00 199 aa12.59□□□□□ -0.39
VSX1-203ENST00000409285 PLA2G1BP04054 148 aaKnown RBP12.58□□□□□ -0.4
VSX1-203ENST00000409285 SMIM11BQ8TCY0 68 aa12.58□□□□□ -0.4
VSX1-203ENST00000409285 TSPAN13O95857 204 aa12.57□□□□□ -0.4
VSX1-203ENST00000409285 Q5VSD8 79 aa12.57□□□□□ -0.4
VSX1-203ENST00000409285 DIRC1Q969H9 104 aa12.57□□□□□ -0.4
VSX1-203ENST00000409285 TRBV7-6A0A0J9YX20 115 aa12.56□□□□□ -0.4
VSX1-203ENST00000409285 H0Y9J4 135 aa12.56□□□□□ -0.4
VSX1-203ENST00000409285 RPL28P46779 137 aaKnown RBP12.56□□□□□ -0.4
VSX1-203ENST00000409285 KRTAP13-1Q8IUC0 172 aa12.56□□□□□ -0.4
VSX1-203ENST00000409285 IGLV7-43P04211 117 aa12.55□□□□□ -0.4
VSX1-203ENST00000409285 C6orf99Q4VX62 202 aa12.54□□□□□ -0.4
VSX1-203ENST00000409285 NAA38Q9BRA0 125 aaKnown RBP12.54□□□□□ -0.4
VSX1-203ENST00000409285 ETDCA0A1B0GVM5 59 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 KRTAP4-5Q9BYR2 181 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 ABCA13Q86UQ4 5058 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 C9orf118A6NHY6 69 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 B5MCH6 92 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 Q6ZRX8 168 aa12.53□□□□□ -0.4
VSX1-203ENST00000409285 FAM19A1Q7Z5A9 133 aa12.52□□□□□ -0.41
VSX1-203ENST00000409285 H3BUT2 72 aa12.51□□□□□ -0.41
VSX1-203ENST00000409285 ZNF861PO60384 105 aa12.51□□□□□ -0.41
VSX1-203ENST00000409285 PSMB2P49721 201 aa12.51□□□□□ -0.41
VSX1-203ENST00000409285 ELOF1P60002 83 aaKnown RBP12.51□□□□□ -0.41
VSX1-203ENST00000409285 PKHD1L1Q86WI1 4243 aa12.5□□□□□ -0.41
VSX1-203ENST00000409285 UBE2AP49459 152 aa12.49□□□□□ -0.41
VSX1-203ENST00000409285 PRLHP81277 87 aa12.49□□□□□ -0.41
VSX1-203ENST00000409285 PCLOQ9Y6V0 5065 aa12.48□□□□□ -0.41
VSX1-203ENST00000409285 TRIAP1O43715 76 aa12.47□□□□□ -0.41
VSX1-203ENST00000409285 COX7BP24311 80 aa12.47□□□□□ -0.41
VSX1-203ENST00000409285 VAMP3Q15836 100 aa12.46□□□□□ -0.41
VSX1-203ENST00000409285 Q9BRP9 147 aa12.45□□□□□ -0.42
VSX1-203ENST00000409285 A0A1W2PPM0 123 aa12.44□□□□□ -0.42
VSX1-203ENST00000409285 SPINK6Q6UWN8 80 aa12.44□□□□□ -0.42
VSX1-203ENST00000409285 INAFM2P0DMQ5 153 aa12.43□□□□□ -0.42
VSX1-203ENST00000409285 SCGB1C2P0DMR2 95 aa12.43□□□□□ -0.42
VSX1-203ENST00000409285 SMCR5Q8TEV8 140 aa12.43□□□□□ -0.42
VSX1-203ENST00000409285 DHRS4-AS1Q9P1J3 65 aa12.43□□□□□ -0.42
VSX1-203ENST00000409285 COX6CP09669 75 aa12.42□□□□□ -0.42
VSX1-203ENST00000409285 FABP2P12104 132 aa12.42□□□□□ -0.42
VSX1-203ENST00000409285 H0YGX0 51 aa12.41□□□□□ -0.42
VSX1-203ENST00000409285 LYRM7Q5U5X0 104 aa12.41□□□□□ -0.42
VSX1-203ENST00000409285 HIGD2AQ9BW72 106 aa12.4□□□□□ -0.42
VSX1-203ENST00000409285 LINC00575Q6W349 94 aa12.39□□□□□ -0.43
VSX1-203ENST00000409285 A0A1B0GV90 55 aa12.37□□□□□ -0.43
VSX1-203ENST00000409285 SLC25A20O43772 301 aa12.35□□□□□ -0.43
VSX1-203ENST00000409285 CLEC2BQ92478 149 aa12.35□□□□□ -0.43
VSX1-203ENST00000409285 SPCS1Q9Y6A9 102 aa12.35□□□□□ -0.43
VSX1-203ENST00000409285 ERC2-IT1O76042 136 aa12.34□□□□□ -0.43
VSX1-203ENST00000409285 A0A1B0GX51 115 aa12.34□□□□□ -0.43
VSX1-203ENST00000409285 hADV29S1A0JD25 119 aa12.33□□□□□ -0.44
VSX1-203ENST00000409285 FAM218AQ96MZ4 157 aa12.33□□□□□ -0.44
VSX1-203ENST00000409285 ZNF706Q9Y5V0 76 aaPredicted RBP12.33□□□□□ -0.44
VSX1-203ENST00000409285 TRBV20-1A0A075B6N2 111 aa12.32□□□□□ -0.44
VSX1-203ENST00000409285 TCL1BO95988 128 aa12.32□□□□□ -0.44
VSX1-203ENST00000409285 FLG2Q5D862 2391 aaPredicted RBP12.32□□□□□ -0.44
VSX1-203ENST00000409285 K7EP34 96 aa12.3□□□□□ -0.44
VSX1-203ENST00000409285 SNCGO76070 127 aa12.3□□□□□ -0.44
VSX1-203ENST00000409285 ATXN8Q156A1 80 aa12.3□□□□□ -0.44
VSX1-203ENST00000409285 SPRR4Q96PI1 79 aa12.3□□□□□ -0.44
VSX1-203ENST00000409285 LST1O00453 97 aa12.28□□□□□ -0.44
VSX1-203ENST00000409285 MYCBP2O75592 4640 aa12.27□□□□□ -0.44
VSX1-203ENST00000409285 KRTAP1-4P0C5Y4 121 aa12.27□□□□□ -0.44
VSX1-203ENST00000409285 GTF2H5Q6ZYL4 71 aa12.27□□□□□ -0.44
VSX1-203ENST00000409285 IGLV5-48A0A075B6I7 105 aa12.27□□□□□ -0.45
VSX1-203ENST00000409285 LINC00483Q53H64 154 aa12.27□□□□□ -0.45
VSX1-203ENST00000409285 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.27□□□□□ -0.45
VSX1-203ENST00000409285 H3BMG7 143 aa12.25□□□□□ -0.45
VSX1-203ENST00000409285 TRACP01848 142 aa12.25□□□□□ -0.45
VSX1-203ENST00000409285 Q6ZQY7 126 aa12.25□□□□□ -0.45
VSX1-203ENST00000409285 ST20-AS1Q8NBB2 130 aa12.25□□□□□ -0.45
VSX1-203ENST00000409285 SPRR1BP22528 89 aa12.24□□□□□ -0.45
VSX1-203ENST00000409285 LINC01547P58512 204 aaPredicted RBP12.23□□□□□ -0.45
VSX1-203ENST00000409285 FAM229BQ4G0N7 80 aa12.23□□□□□ -0.45
VSX1-203ENST00000409285 OCIAD2Q56VL3 154 aa12.22□□□□□ -0.45
VSX1-203ENST00000409285 LRP1Q07954 4544 aaKnown RBP12.22□□□□□ -0.45
VSX1-203ENST00000409285 FAT3Q8TDW7 4589 aa12.22□□□□□ -0.45
VSX1-203ENST00000409285 DNAL4O96015 105 aa12.21□□□□□ -0.45
VSX1-203ENST00000409285 PPDPFLQ8WWR9 84 aa12.21□□□□□ -0.45
VSX1-203ENST00000409285 TEX49A0A1B0GTD5 131 aa12.21□□□□□ -0.46
VSX1-203ENST00000409285 GAGE2AQ6NT46 116 aa12.2□□□□□ -0.46
VSX1-203ENST00000409285 GHRHP01286 108 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms