RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 MRPL34Q9BQ48 92 aaKnown RBP3.66□□□□□ -1.82
VPS13C-204ENST00000395898 LITAFQ99732 161 aa3.66□□□□□ -1.82
VPS13C-204ENST00000395898 ST20-AS1Q8NBB2 130 aa3.65□□□□□ -1.82
VPS13C-204ENST00000395898 VPS13AQ96RL7 3174 aa3.65□□□□□ -1.82
VPS13C-204ENST00000395898 IGLV1-50A0A075B6I6 118 aa3.65□□□□□ -1.82
VPS13C-204ENST00000395898 PRR34Q9NV39 138 aa3.65□□□□□ -1.82
VPS13C-204ENST00000395898 RPL37AP61513 92 aaKnown RBP3.65□□□□□ -1.83
VPS13C-204ENST00000395898 K7EQZ3 153 aa3.64□□□□□ -1.83
VPS13C-204ENST00000395898 SSBP3-AS1Q7Z2R9 100 aa3.64□□□□□ -1.83
VPS13C-204ENST00000395898 PLA2G2DQ9UNK4 145 aa3.64□□□□□ -1.83
VPS13C-204ENST00000395898 CYP4F30PQ9H0H9 118 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 FAM168BA1KXE4 195 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 HTTP42858 3142 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 ZNF861PO60384 105 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 VCANP13611 3396 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 TLX1NBP0CAT3 122 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 LINC00528Q8N1L1 170 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 SERTAD4-AS1Q5TG53 156 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 UNC80Q8N2C7 3258 aa3.63□□□□□ -1.83
VPS13C-204ENST00000395898 C4orf26Q17RF5 130 aa3.62□□□□□ -1.83
VPS13C-204ENST00000395898 UQCR11O14957 56 aa3.62□□□□□ -1.83
VPS13C-204ENST00000395898 C19orf73Q9NVV2 129 aa3.61□□□□□ -1.83
VPS13C-204ENST00000395898 PRR15Q8IV56 129 aa3.61□□□□□ -1.83
VPS13C-204ENST00000395898 KLKP1Q107X0 134 aa3.61□□□□□ -1.83
VPS13C-204ENST00000395898 IGFL1Q6UW32 110 aa3.61□□□□□ -1.83
VPS13C-204ENST00000395898 Q8N377 158 aa3.61□□□□□ -1.83
VPS13C-204ENST00000395898 IGLV8-61A0A075B6I0 122 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 J3QL48 77 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 C15orf56Q8N910 161 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 COA5Q86WW8 74 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 LINC00304Q8N9R0 145 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 LINC01600Q96MT4 127 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 A0A1B0GVX0 72 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 K7EIL1 84 aa3.6□□□□□ -1.83
VPS13C-204ENST00000395898 C9orf163Q8N9P6 203 aa3.59□□□□□ -1.83
VPS13C-204ENST00000395898 KRTAP10-11P60412 298 aa3.59□□□□□ -1.83
VPS13C-204ENST00000395898 LINC00612Q8N6U2 182 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 WDFY4Q6ZS81 3184 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 A0A087WTM6 91 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 C9orf129Q5T035 196 aaKnown RBP3.58□□□□□ -1.84
VPS13C-204ENST00000395898 A0A096LNT2 108 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 C8orf17Q9NRJ1 99 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 TRANK1O15050 2925 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 SPINT4Q6UDR6 99 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 LINC00336Q6ZUF6 198 aa3.58□□□□□ -1.84
VPS13C-204ENST00000395898 GIG44P09565 113 aaPredicted RBP3.57□□□□□ -1.84
VPS13C-204ENST00000395898 CNBPP62633 177 aaKnown RBP3.57□□□□□ -1.84
VPS13C-204ENST00000395898 RBM12B-AS1Q9P1G2 102 aa3.57□□□□□ -1.84
VPS13C-204ENST00000395898 SZT2Q5T011 3432 aa3.57□□□□□ -1.84
VPS13C-204ENST00000395898 OBSCN-AS1Q96MR7 158 aa3.57□□□□□ -1.84
VPS13C-204ENST00000395898 ITPR3Q14573 2671 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 LAMA1P25391 3075 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 AKAP13Q12802 2813 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 FLNAP21333 2647 aaKnown RBP3.56□□□□□ -1.84
VPS13C-204ENST00000395898 MGAQ8IWI9 3026 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 COX6B2Q6YFQ2 88 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 IGLV7-43P04211 117 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 CRIPTQ9P021 101 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 CFAP46Q8IYW2 2715 aa3.56□□□□□ -1.84
VPS13C-204ENST00000395898 DSCR10P59022 87 aa3.55□□□□□ -1.84
VPS13C-204ENST00000395898 MIR22HGQ0VDD5 57 aa3.55□□□□□ -1.84
VPS13C-204ENST00000395898 SPANXA2-OT1Q8N9U9 137 aa3.55□□□□□ -1.84
VPS13C-204ENST00000395898 EPG5Q9HCE0 2579 aa3.55□□□□□ -1.84
VPS13C-204ENST00000395898 FREM2Q5SZK8 3169 aa3.55□□□□□ -1.84
VPS13C-204ENST00000395898 EIF4EBP3O60516 100 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-204ENST00000395898 PSORS1C2Q9UIG4 136 aa3.54□□□□□ -1.84
VPS13C-204ENST00000395898 KRTAP10-3P60369 221 aa3.54□□□□□ -1.84
VPS13C-204ENST00000395898 FLG2Q5D862 2391 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-204ENST00000395898 A8MUN3 132 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 ZNF575Q86XF7 245 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 COL6A3P12111 3177 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 IGLV5-48A0A075B6I7 105 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 IGLV5-37A0A075B6J1 123 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 SPRR4Q96PI1 79 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 H7BZZ5 65 aa3.53□□□□□ -1.84
VPS13C-204ENST00000395898 APLNQ9ULZ1 77 aa3.52□□□□□ -1.85
VPS13C-204ENST00000395898 C9orf92A6NGG3 77 aa3.52□□□□□ -1.85
VPS13C-204ENST00000395898 USP34Q70CQ2 3546 aa3.52□□□□□ -1.85
VPS13C-204ENST00000395898 A0A1W2PNN7 141 aa3.52□□□□□ -1.85
VPS13C-204ENST00000395898 FRYQ5TBA9 3013 aa3.51□□□□□ -1.85
VPS13C-204ENST00000395898 CD164Q04900 197 aa3.51□□□□□ -1.85
VPS13C-204ENST00000395898 MGAM2Q2M2H8 2515 aa3.51□□□□□ -1.85
VPS13C-204ENST00000395898 HELZ2Q9BYK8 2649 aaKnown RBP3.5□□□□□ -1.85
VPS13C-204ENST00000395898 KRTAP1-3Q8IUG1 177 aa3.5□□□□□ -1.85
VPS13C-204ENST00000395898 ATRQ13535 2644 aa3.49□□□□□ -1.85
VPS13C-204ENST00000395898 FLNBO75369 2602 aaKnown RBP3.49□□□□□ -1.85
VPS13C-204ENST00000395898 SMR3BP02814 79 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-204ENST00000395898 FAM104AQ969W3 186 aa3.49□□□□□ -1.85
VPS13C-204ENST00000395898 CHD9Q3L8U1 2897 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 CENPEQ02224 2701 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 CDC42SE1Q9NRR8 79 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 ANAPC11Q9NYG5 84 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 A0A1W2PNM2 257 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 KTN1-AS1Q86SY8 53 aa3.48□□□□□ -1.85
VPS13C-204ENST00000395898 CHD6Q8TD26 2715 aa3.47□□□□□ -1.85
VPS13C-204ENST00000395898 KMT2BQ9UMN6 2715 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-204ENST00000395898 MAST4O15021 2626 aa3.46□□□□□ -1.86
VPS13C-204ENST00000395898 HECTD1Q9ULT8 2610 aa3.46□□□□□ -1.86
VPS13C-204ENST00000395898 WIPF1O43516 503 aa3.46□□□□□ -1.86
VPS13C-204ENST00000395898 A0A0G2JQZ4 141 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms