RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ACANP16112 2415 aa7.83□□□□□ -1.16
SYNPO-202ENST00000394243 LINC00588Q9Y4M8 146 aa7.83□□□□□ -1.16
SYNPO-202ENST00000394243 Q8NAQ8 132 aa7.82□□□□□ -1.16
SYNPO-202ENST00000394243 OBSCN-AS1Q96MR7 158 aa7.82□□□□□ -1.16
SYNPO-202ENST00000394243 Q5XG85 94 aa7.8□□□□□ -1.16
SYNPO-202ENST00000394243 NCOR2Q9Y618 2525 aa7.8□□□□□ -1.16
SYNPO-202ENST00000394243 USP9YO00507 2555 aaPredicted RBP7.78□□□□□ -1.16
SYNPO-202ENST00000394243 A0A0D9SG42 100 aa7.78□□□□□ -1.16
SYNPO-202ENST00000394243 FAM104AQ969W3 186 aa7.77□□□□□ -1.17
SYNPO-202ENST00000394243 OCR1Q9BZK8 76 aa7.77□□□□□ -1.17
SYNPO-202ENST00000394243 DNAH10OSP0CZ25 163 aa7.77□□□□□ -1.17
SYNPO-202ENST00000394243 DNAH12Q6ZR08 3092 aa7.76□□□□□ -1.17
SYNPO-202ENST00000394243 A0A1W2PNM2 257 aa7.76□□□□□ -1.17
SYNPO-202ENST00000394243 PRO3102Q9H379 93 aa7.76□□□□□ -1.17
SYNPO-202ENST00000394243 FAM229BQ4G0N7 80 aa7.76□□□□□ -1.17
SYNPO-202ENST00000394243 NBDYA0A0U1RRE5 68 aa7.76□□□□□ -1.17
SYNPO-202ENST00000394243 C15orf56Q8N910 161 aa7.75□□□□□ -1.17
SYNPO-202ENST00000394243 PRR26Q8N8Z3 221 aa7.75□□□□□ -1.17
SYNPO-202ENST00000394243 KLK9Q2XQG4 91 aa7.75□□□□□ -1.17
SYNPO-202ENST00000394243 PCSK5Q92824 1860 aa7.74□□□□□ -1.17
SYNPO-202ENST00000394243 LINC01554Q52M75 96 aa7.74□□□□□ -1.17
SYNPO-202ENST00000394243 CR1P17927 2039 aa7.74□□□□□ -1.17
SYNPO-202ENST00000394243 LUZP6Q538Z0 58 aa7.74□□□□□ -1.17
SYNPO-202ENST00000394243 C9orf163Q8N9P6 203 aa7.73□□□□□ -1.17
SYNPO-202ENST00000394243 Q75L30 129 aa7.72□□□□□ -1.17
SYNPO-202ENST00000394243 PRR34Q9NV39 138 aa7.71□□□□□ -1.17
SYNPO-202ENST00000394243 BRCA2P51587 3418 aa7.71□□□□□ -1.18
SYNPO-202ENST00000394243 CSNK1G2-AS1Q8NCQ2 148 aa7.71□□□□□ -1.18
SYNPO-202ENST00000394243 FP248Q71RG6 208 aaPredicted RBP7.71□□□□□ -1.18
SYNPO-202ENST00000394243 Q8N1X5 172 aa7.71□□□□□ -1.18
SYNPO-202ENST00000394243 PRAC1Q96KF2 57 aa7.71□□□□□ -1.18
SYNPO-202ENST00000394243 CYSTM1Q9H1C7 97 aa7.7□□□□□ -1.18
SYNPO-202ENST00000394243 C9orf92A6NGG3 77 aa7.7□□□□□ -1.18
SYNPO-202ENST00000394243 ANAPC11Q9NYG5 84 aa7.69□□□□□ -1.18
SYNPO-202ENST00000394243 PLA2G2DQ9UNK4 145 aa7.67□□□□□ -1.18
SYNPO-202ENST00000394243 IGLV5-48A0A075B6I7 105 aa7.67□□□□□ -1.18
SYNPO-202ENST00000394243 ZNF861PO60384 105 aa7.66□□□□□ -1.18
SYNPO-202ENST00000394243 MTORP42345 2549 aa7.66□□□□□ -1.18
SYNPO-202ENST00000394243 ANKRD17O75179 2603 aaKnown RBP7.65□□□□□ -1.18
SYNPO-202ENST00000394243 IGLV7-46A0A075B6I9 117 aa7.65□□□□□ -1.19
SYNPO-202ENST00000394243 TLX1NBP0CAT3 122 aa7.64□□□□□ -1.19
SYNPO-202ENST00000394243 Q8N9P0 234 aaPredicted RBP7.64□□□□□ -1.19
SYNPO-202ENST00000394243 CEP350Q5VT06 3117 aa7.62□□□□□ -1.19
SYNPO-202ENST00000394243 COL4A2P08572 1712 aa7.62□□□□□ -1.19
SYNPO-202ENST00000394243 MKI67P46013 3256 aaKnown RBP7.62□□□□□ -1.19
SYNPO-202ENST00000394243 ANKRD11Q6UB99 2663 aaPredicted RBP7.62□□□□□ -1.19
SYNPO-202ENST00000394243 LINC00304Q8N9R0 145 aa7.62□□□□□ -1.19
SYNPO-202ENST00000394243 PIEZO1Q92508 2521 aa7.61□□□□□ -1.19
SYNPO-202ENST00000394243 CSAG1Q6PB30 78 aa7.6□□□□□ -1.19
SYNPO-202ENST00000394243 CHD8Q9HCK8 2581 aa7.6□□□□□ -1.19
SYNPO-202ENST00000394243 Q5VV11 94 aa7.6□□□□□ -1.19
SYNPO-202ENST00000394243 LAMA3Q16787 3333 aa7.6□□□□□ -1.19
SYNPO-202ENST00000394243 GIG44P09565 113 aaPredicted RBP7.6□□□□□ -1.19
SYNPO-202ENST00000394243 LINC01558Q9Y6Z2 57 aa7.59□□□□□ -1.19
SYNPO-202ENST00000394243 IGLV5-37A0A075B6J1 123 aa7.59□□□□□ -1.19
SYNPO-202ENST00000394243 A0A1B0GU33 70 aa7.58□□□□□ -1.2
SYNPO-202ENST00000394243 SPRR4Q96PI1 79 aa7.58□□□□□ -1.2
SYNPO-202ENST00000394243 M0R2T5 61 aa7.57□□□□□ -1.2
SYNPO-202ENST00000394243 OXTP01178 125 aa7.56□□□□□ -1.2
SYNPO-202ENST00000394243 ZNF575Q86XF7 245 aa7.56□□□□□ -1.2
SYNPO-202ENST00000394243 A0A096LNT2 108 aa7.55□□□□□ -1.2
SYNPO-202ENST00000394243 HRES1P13985 223 aa7.55□□□□□ -1.2
SYNPO-202ENST00000394243 LINC00612Q8N6U2 182 aa7.54□□□□□ -1.2
SYNPO-202ENST00000394243 PSORS1C2Q9UIG4 136 aa7.54□□□□□ -1.2
SYNPO-202ENST00000394243 SPINK7P58062 85 aa7.53□□□□□ -1.2
SYNPO-202ENST00000394243 CNBPP62633 177 aaKnown RBP7.53□□□□□ -1.2
SYNPO-202ENST00000394243 CASC10Q5T4H9 136 aa7.53□□□□□ -1.2
SYNPO-202ENST00000394243 POLQO75417 2590 aa7.53□□□□□ -1.2
SYNPO-202ENST00000394243 SPTBN4Q9H254 2564 aa7.52□□□□□ -1.21
SYNPO-202ENST00000394243 IGLV7-43P04211 117 aa7.52□□□□□ -1.21
SYNPO-202ENST00000394243 BPTFQ12830 3046 aa7.51□□□□□ -1.21
SYNPO-202ENST00000394243 KRTAP24-1Q3LI83 254 aa7.51□□□□□ -1.21
SYNPO-202ENST00000394243 C19orf73Q9NVV2 129 aa7.51□□□□□ -1.21
SYNPO-202ENST00000394243 CEP295Q9C0D2 2601 aa7.5□□□□□ -1.21
SYNPO-202ENST00000394243 A0A0A0MQY5 61 aa7.49□□□□□ -1.21
SYNPO-202ENST00000394243 C5orf42Q9H799 3197 aa7.49□□□□□ -1.21
SYNPO-202ENST00000394243 A0A087WTM6 91 aa7.48□□□□□ -1.21
SYNPO-202ENST00000394243 KRTAP10-11P60412 298 aa7.47□□□□□ -1.21
SYNPO-202ENST00000394243 DMAC1Q96GE9 116 aa7.46□□□□□ -1.21
SYNPO-202ENST00000394243 LAMA2P24043 3122 aaKnown RBP7.46□□□□□ -1.22
SYNPO-202ENST00000394243 USP24Q9UPU5 2620 aa7.44□□□□□ -1.22
SYNPO-202ENST00000394243 PRRC2CQ9Y520 2896 aaKnown RBP7.44□□□□□ -1.22
SYNPO-202ENST00000394243 MMP24-AS1A0A0U1RRL7 71 aa7.44□□□□□ -1.22
SYNPO-202ENST00000394243 LINC00483Q53H64 154 aa7.43□□□□□ -1.22
SYNPO-202ENST00000394243 SMR3BP02814 79 aaPredicted RBP7.42□□□□□ -1.22
SYNPO-202ENST00000394243 CAMK2N1Q7Z7J9 78 aa7.4□□□□□ -1.22
SYNPO-202ENST00000394243 XIRP2A4UGR9 3374 aa7.4□□□□□ -1.22
SYNPO-202ENST00000394243 K7EIL1 84 aa7.39□□□□□ -1.23
SYNPO-202ENST00000394243 KRTAP10-3P60369 221 aa7.38□□□□□ -1.23
SYNPO-202ENST00000394243 Q8NDZ9 215 aa7.38□□□□□ -1.23
SYNPO-202ENST00000394243 CDH23Q9H251 3354 aa7.37□□□□□ -1.23
SYNPO-202ENST00000394243 WWC2-AS2Q96NR7 200 aa7.34□□□□□ -1.23
SYNPO-202ENST00000394243 Q5W150 140 aa7.33□□□□□ -1.24
SYNPO-202ENST00000394243 FLG2Q5D862 2391 aaPredicted RBP7.33□□□□□ -1.24
SYNPO-202ENST00000394243 ROMO1P60602 79 aa7.3□□□□□ -1.24
SYNPO-202ENST00000394243 LINC00472Q9H8W2 130 aa7.3□□□□□ -1.24
SYNPO-202ENST00000394243 ZCCHC13Q8WW36 166 aaKnown RBP7.29□□□□□ -1.24
SYNPO-202ENST00000394243 SZT2Q5T011 3432 aa7.28□□□□□ -1.24
SYNPO-202ENST00000394243 DNAH14Q0VDD8 3507 aa7.27□□□□□ -1.25
SYNPO-202ENST00000394243 PRUNE2Q8WUY3 3088 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms