RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 C1orf64Q8NEQ6 169 aa10.86□□□□□ -0.67
SCN3B-202ENST00000392770 RPL37AP61513 92 aaKnown RBP10.85□□□□□ -0.67
SCN3B-202ENST00000392770 CRYGAP11844 174 aa10.84□□□□□ -0.67
SCN3B-202ENST00000392770 A0A087WTM6 91 aa10.83□□□□□ -0.68
SCN3B-202ENST00000392770 TRBV7-4A0A0J9YYF1 115 aa10.83□□□□□ -0.68
SCN3B-202ENST00000392770 PLA2G2DQ9UNK4 145 aa10.83□□□□□ -0.68
SCN3B-202ENST00000392770 PRO0628Q9UI54 55 aa10.83□□□□□ -0.68
SCN3B-202ENST00000392770 XIRP2A4UGR9 3374 aa10.82□□□□□ -0.68
SCN3B-202ENST00000392770 TYMSOSQ8TAI1 123 aa10.82□□□□□ -0.68
SCN3B-202ENST00000392770 HECTD1Q9ULT8 2610 aa10.82□□□□□ -0.68
SCN3B-202ENST00000392770 FAM104AQ969W3 186 aa10.81□□□□□ -0.68
SCN3B-202ENST00000392770 FAM229AH3BQW9 127 aa10.8□□□□□ -0.68
SCN3B-202ENST00000392770 TP53AIP1Q9HCN2 124 aa10.79□□□□□ -0.68
SCN3B-202ENST00000392770 ZNF292O60281 2723 aa10.79□□□□□ -0.68
SCN3B-202ENST00000392770 MGAQ8IWI9 3026 aa10.78□□□□□ -0.68
SCN3B-202ENST00000392770 AKAP13Q12802 2813 aa10.78□□□□□ -0.68
SCN3B-202ENST00000392770 WIPF1O43516 503 aa10.77□□□□□ -0.68
SCN3B-202ENST00000392770 C9orf163Q8N9P6 203 aa10.77□□□□□ -0.68
SCN3B-202ENST00000392770 IGKV2D-30A0A075B6S6 120 aa10.77□□□□□ -0.69
SCN3B-202ENST00000392770 IGKV2-30P06310 120 aa10.77□□□□□ -0.69
SCN3B-202ENST00000392770 A0A1W2PNN7 141 aa10.76□□□□□ -0.69
SCN3B-202ENST00000392770 IGFL1Q6UW32 110 aa10.76□□□□□ -0.69
SCN3B-202ENST00000392770 Q8N377 158 aa10.76□□□□□ -0.69
SCN3B-202ENST00000392770 CNBPP62633 177 aaKnown RBP10.74□□□□□ -0.69
SCN3B-202ENST00000392770 LINC00313P59037 77 aa10.74□□□□□ -0.69
SCN3B-202ENST00000392770 FLNAP21333 2647 aaKnown RBP10.73□□□□□ -0.69
SCN3B-202ENST00000392770 K7EQZ3 153 aa10.72□□□□□ -0.69
SCN3B-202ENST00000392770 C4orf26Q17RF5 130 aa10.72□□□□□ -0.69
SCN3B-202ENST00000392770 A8MWP4 228 aa10.71□□□□□ -0.69
SCN3B-202ENST00000392770 ZNF861PO60384 105 aa10.7□□□□□ -0.7
SCN3B-202ENST00000392770 SPTBN5Q9NRC6 3674 aaKnown RBP10.69□□□□□ -0.7
SCN3B-202ENST00000392770 A0A0G2JQZ4 141 aa10.69□□□□□ -0.7
SCN3B-202ENST00000392770 C7orf65Q6ZTY9 151 aa10.68□□□□□ -0.7
SCN3B-202ENST00000392770 CFAP54Q96N23 3096 aa10.68□□□□□ -0.7
SCN3B-202ENST00000392770 WDFY4Q6ZS81 3184 aa10.67□□□□□ -0.7
SCN3B-202ENST00000392770 ITPR3Q14573 2671 aa10.66□□□□□ -0.7
SCN3B-202ENST00000392770 TRIOO75962 3097 aa10.66□□□□□ -0.7
SCN3B-202ENST00000392770 ERC2-IT1O76042 136 aa10.66□□□□□ -0.7
SCN3B-202ENST00000392770 TRAV22A0A0B4J277 110 aa10.65□□□□□ -0.7
SCN3B-202ENST00000392770 IGLV5-37A0A075B6J1 123 aa10.64□□□□□ -0.71
SCN3B-202ENST00000392770 H3BPC8 53 aa10.64□□□□□ -0.71
SCN3B-202ENST00000392770 Q96NJ1 140 aa10.64□□□□□ -0.71
SCN3B-202ENST00000392770 PSORS1C2Q9UIG4 136 aa10.63□□□□□ -0.71
SCN3B-202ENST00000392770 ANAPC11Q9NYG5 84 aa10.62□□□□□ -0.71
SCN3B-202ENST00000392770 VCANP13611 3396 aa10.62□□□□□ -0.71
SCN3B-202ENST00000392770 IGLV7-43P04211 117 aa10.61□□□□□ -0.71
SCN3B-202ENST00000392770 C8orf87E5RJ46 101 aa10.6□□□□□ -0.71
SCN3B-202ENST00000392770 MRPL34Q9BQ48 92 aaKnown RBP10.59□□□□□ -0.71
SCN3B-202ENST00000392770 LAMA1P25391 3075 aa10.58□□□□□ -0.72
SCN3B-202ENST00000392770 ACYP2P14621 99 aa10.58□□□□□ -0.72
SCN3B-202ENST00000392770 SMR3BP02814 79 aaPredicted RBP10.57□□□□□ -0.72
SCN3B-202ENST00000392770 SPRR4Q96PI1 79 aa10.57□□□□□ -0.72
SCN3B-202ENST00000392770 SSBP3-AS1Q7Z2R9 100 aa10.56□□□□□ -0.72
SCN3B-202ENST00000392770 PRR15Q8IV56 129 aa10.56□□□□□ -0.72
SCN3B-202ENST00000392770 DSCR10P59022 87 aa10.55□□□□□ -0.72
SCN3B-202ENST00000392770 RPS28P62857 69 aaKnown RBP10.55□□□□□ -0.72
SCN3B-202ENST00000392770 LINC00336Q6ZUF6 198 aa10.54□□□□□ -0.72
SCN3B-202ENST00000392770 C8orf17Q9NRJ1 99 aa10.54□□□□□ -0.72
SCN3B-202ENST00000392770 HELZ2Q9BYK8 2649 aaKnown RBP10.54□□□□□ -0.72
SCN3B-202ENST00000392770 CELSR3Q9NYQ7 3312 aa10.54□□□□□ -0.72
SCN3B-202ENST00000392770 LINC00304Q8N9R0 145 aa10.54□□□□□ -0.72
SCN3B-202ENST00000392770 A0A1W2PNM2 257 aa10.53□□□□□ -0.72
SCN3B-202ENST00000392770 USP24Q9UPU5 2620 aa10.53□□□□□ -0.72
SCN3B-202ENST00000392770 OBSCN-AS1Q96MR7 158 aa10.52□□□□□ -0.72
SCN3B-202ENST00000392770 TNP2Q05952 138 aa10.52□□□□□ -0.73
SCN3B-202ENST00000392770 TNRC18O15417 2968 aaPredicted RBP10.52□□□□□ -0.73
SCN3B-202ENST00000392770 A0A1B0GVX0 72 aa10.52□□□□□ -0.73
SCN3B-202ENST00000392770 LOC101927531A0A1B0GV80 90 aa10.51□□□□□ -0.73
SCN3B-202ENST00000392770 CFAP46Q8IYW2 2715 aa10.5□□□□□ -0.73
SCN3B-202ENST00000392770 VPS13AQ96RL7 3174 aa10.5□□□□□ -0.73
SCN3B-202ENST00000392770 FLNBO75369 2602 aaKnown RBP10.49□□□□□ -0.73
SCN3B-202ENST00000392770 SPAG11AQ6PDA7 123 aa10.49□□□□□ -0.73
SCN3B-202ENST00000392770 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.48□□□□□ -0.73
SCN3B-202ENST00000392770 IGLV5-48A0A075B6I7 105 aa10.47□□□□□ -0.73
SCN3B-202ENST00000392770 Q8NDZ9 215 aa10.47□□□□□ -0.73
SCN3B-202ENST00000392770 A0A1B0GU69 56 aa10.46□□□□□ -0.73
SCN3B-202ENST00000392770 ATP11AUNQ6ZP68 121 aa10.46□□□□□ -0.74
SCN3B-202ENST00000392770 LINC01600Q96MT4 127 aa10.46□□□□□ -0.74
SCN3B-202ENST00000392770 C9orf92A6NGG3 77 aa10.43□□□□□ -0.74
SCN3B-202ENST00000392770 J3QL48 77 aa10.41□□□□□ -0.74
SCN3B-202ENST00000392770 DSPP15924 2871 aaKnown RBP10.4□□□□□ -0.74
SCN3B-202ENST00000392770 EYSQ5T1H1 3165 aa10.38□□□□□ -0.75
SCN3B-202ENST00000392770 IGSF10Q6WRI0 2623 aa10.38□□□□□ -0.75
SCN3B-202ENST00000392770 KLKP1Q107X0 134 aa10.37□□□□□ -0.75
SCN3B-202ENST00000392770 ATRQ13535 2644 aa10.37□□□□□ -0.75
SCN3B-202ENST00000392770 KRTAP1-5Q9BYS1 174 aa10.36□□□□□ -0.75
SCN3B-202ENST00000392770 REV3LO60673 3130 aa10.36□□□□□ -0.75
SCN3B-202ENST00000392770 KRTAP26-1Q6PEX3 210 aa10.36□□□□□ -0.75
SCN3B-202ENST00000392770 COL6A3P12111 3177 aa10.36□□□□□ -0.75
SCN3B-202ENST00000392770 COA5Q86WW8 74 aa10.36□□□□□ -0.75
SCN3B-202ENST00000392770 IGLV8-61A0A075B6I0 122 aa10.34□□□□□ -0.75
SCN3B-202ENST00000392770 CENPEQ02224 2701 aa10.34□□□□□ -0.75
SCN3B-202ENST00000392770 SPEGQ15772 3267 aa10.33□□□□□ -0.76
SCN3B-202ENST00000392770 SPINT4Q6UDR6 99 aa10.32□□□□□ -0.76
SCN3B-202ENST00000392770 COX6B2Q6YFQ2 88 aa10.32□□□□□ -0.76
SCN3B-202ENST00000392770 PLAC8Q9NZF1 115 aa10.32□□□□□ -0.76
SCN3B-202ENST00000392770 SPRR1AP35321 89 aa10.3□□□□□ -0.76
SCN3B-202ENST00000392770 H7BZZ5 65 aa10.28□□□□□ -0.76
SCN3B-202ENST00000392770 USP34Q70CQ2 3546 aa10.27□□□□□ -0.76
SCN3B-202ENST00000392770 CD164Q04900 197 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms