RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 CXCL6P80162 114 aa12.82□□□□□ -0.36
CCDC50-202ENST00000392456 LINC00588Q9Y4M8 146 aa12.82□□□□□ -0.36
CCDC50-202ENST00000392456 Q6ZVQ6 151 aa12.82□□□□□ -0.36
CCDC50-202ENST00000392456 TMEM256-PLSCR3K7ERE1 68 aa12.8□□□□□ -0.36
CCDC50-202ENST00000392456 FAM19A3Q7Z5A8 133 aa12.8□□□□□ -0.36
CCDC50-202ENST00000392456 M0R378 163 aa12.79□□□□□ -0.36
CCDC50-202ENST00000392456 Q6ZQT0 140 aa12.79□□□□□ -0.36
CCDC50-202ENST00000392456 DEFB131BA0A096LNP1 70 aa12.78□□□□□ -0.36
CCDC50-202ENST00000392456 PSPHP1O15172 72 aa12.78□□□□□ -0.36
CCDC50-202ENST00000392456 IGKV3OR2-268A0A0C4DH90 116 aa12.77□□□□□ -0.37
CCDC50-202ENST00000392456 A8MU10 97 aa12.76□□□□□ -0.37
CCDC50-202ENST00000392456 TRAV22A0A0B4J277 110 aa12.75□□□□□ -0.37
CCDC50-202ENST00000392456 LRCOL1A6NCL2 159 aa12.74□□□□□ -0.37
CCDC50-202ENST00000392456 M0R2N4 97 aa12.74□□□□□ -0.37
CCDC50-202ENST00000392456 LOC110117498A0A087WWA1 95 aa12.73□□□□□ -0.37
CCDC50-202ENST00000392456 BPY2O14599 106 aa12.73□□□□□ -0.37
CCDC50-202ENST00000392456 CCL18P55774 89 aa12.73□□□□□ -0.37
CCDC50-202ENST00000392456 Q8N814 137 aa12.73□□□□□ -0.37
CCDC50-202ENST00000392456 B9D2Q9BPU9 175 aa12.73□□□□□ -0.37
CCDC50-202ENST00000392456 UBE2BP63146 152 aa12.72□□□□□ -0.37
CCDC50-202ENST00000392456 SYCNQ0VAF6 134 aa12.72□□□□□ -0.37
CCDC50-202ENST00000392456 CSMD3Q7Z407 3707 aa12.72□□□□□ -0.37
CCDC50-202ENST00000392456 CLPSL2Q6UWE3 100 aa12.72□□□□□ -0.37
CCDC50-202ENST00000392456 LYSTQ99698 3801 aa12.72□□□□□ -0.37
CCDC50-202ENST00000392456 H3BNG1 76 aa12.71□□□□□ -0.37
CCDC50-202ENST00000392456 LELP1Q5T871 98 aa12.7□□□□□ -0.38
CCDC50-202ENST00000392456 A0A1B0GUV1 79 aa12.7□□□□□ -0.38
CCDC50-202ENST00000392456 TENM2Q9NT68 2774 aa12.7□□□□□ -0.38
CCDC50-202ENST00000392456 C1orf64Q8NEQ6 169 aa12.69□□□□□ -0.38
CCDC50-202ENST00000392456 OCR1Q9BZK8 76 aa12.68□□□□□ -0.38
CCDC50-202ENST00000392456 NDUFS5O43920 106 aa12.67□□□□□ -0.38
CCDC50-202ENST00000392456 KRTAP21-3Q3LHN1 58 aa12.67□□□□□ -0.38
CCDC50-202ENST00000392456 LINC00269Q8N2A0 174 aa12.67□□□□□ -0.38
CCDC50-202ENST00000392456 H3BS24 57 aa12.66□□□□□ -0.38
CCDC50-202ENST00000392456 WFDC10BQ8IUB3 73 aa12.66□□□□□ -0.38
CCDC50-202ENST00000392456 HIGD2AQ9BW72 106 aa12.66□□□□□ -0.38
CCDC50-202ENST00000392456 LINC00959A0A1B0GUT2 108 aa12.65□□□□□ -0.38
CCDC50-202ENST00000392456 FBN3Q75N90 2809 aa12.65□□□□□ -0.38
CCDC50-202ENST00000392456 C8orf87E5RJ46 101 aa12.65□□□□□ -0.38
CCDC50-202ENST00000392456 ANGP03950 147 aaKnown RBP12.65□□□□□ -0.38
CCDC50-202ENST00000392456 LINC00158P58513 81 aa12.65□□□□□ -0.38
CCDC50-202ENST00000392456 A8MUN3 132 aa12.64□□□□□ -0.39
CCDC50-202ENST00000392456 SCXQ7RTU7 201 aa12.64□□□□□ -0.39
CCDC50-202ENST00000392456 ZNF73O43830 326 aaPredicted RBP12.63□□□□□ -0.39
CCDC50-202ENST00000392456 CD164L2Q6UWJ8 174 aa12.63□□□□□ -0.39
CCDC50-202ENST00000392456 PHF5AQ7RTV0 110 aaKnown RBP12.63□□□□□ -0.39
CCDC50-202ENST00000392456 COX7B2Q8TF08 81 aa12.62□□□□□ -0.39
CCDC50-202ENST00000392456 IGLV10-54A0A075B6I4 117 aa12.62□□□□□ -0.39
CCDC50-202ENST00000392456 IGHV3OR16-9A0A0B4J2B5 98 aa12.61□□□□□ -0.39
CCDC50-202ENST00000392456 KLK12Q9UKR0 248 aa12.61□□□□□ -0.39
CCDC50-202ENST00000392456 REG3AQ06141 175 aa12.61□□□□□ -0.39
CCDC50-202ENST00000392456 Q5VV11 94 aa12.61□□□□□ -0.39
CCDC50-202ENST00000392456 C16orf90A8MZG2 172 aa12.6□□□□□ -0.39
CCDC50-202ENST00000392456 TGP01266 2768 aa12.59□□□□□ -0.39
CCDC50-202ENST00000392456 DNAH7Q8WXX0 4024 aa12.58□□□□□ -0.4
CCDC50-202ENST00000392456 TOMM7Q9P0U1 55 aa12.57□□□□□ -0.4
CCDC50-202ENST00000392456 PLECQ15149 4684 aaKnown RBP12.57□□□□□ -0.4
CCDC50-202ENST00000392456 DYNC2H1Q8NCM8 4307 aaKnown RBP12.57□□□□□ -0.4
CCDC50-202ENST00000392456 A6NN06 94 aa12.56□□□□□ -0.4
CCDC50-202ENST00000392456 PSCAO43653 123 aa12.56□□□□□ -0.4
CCDC50-202ENST00000392456 UBE2AP49459 152 aa12.56□□□□□ -0.4
CCDC50-202ENST00000392456 PDE6GP18545 87 aa12.55□□□□□ -0.4
CCDC50-202ENST00000392456 CHCHD10Q8WYQ3 142 aaPredicted RBP12.55□□□□□ -0.4
CCDC50-202ENST00000392456 PRR34Q9NV39 138 aa12.55□□□□□ -0.4
CCDC50-202ENST00000392456 STARD9Q9P2P6 4700 aa12.54□□□□□ -0.4
CCDC50-202ENST00000392456 ATP11AUNQ6ZP68 121 aa12.53□□□□□ -0.4
CCDC50-202ENST00000392456 IGKV4-1P06312 121 aa12.51□□□□□ -0.41
CCDC50-202ENST00000392456 SPTSSBQ8NFR3 76 aa12.51□□□□□ -0.41
CCDC50-202ENST00000392456 CYP4F30PQ9H0H9 118 aa12.5□□□□□ -0.41
CCDC50-202ENST00000392456 MUC7Q8TAX7 377 aa12.49□□□□□ -0.41
CCDC50-202ENST00000392456 DNAH1Q9P2D7 4330 aa12.48□□□□□ -0.41
CCDC50-202ENST00000392456 LCE6AA0A183 80 aa12.48□□□□□ -0.41
CCDC50-202ENST00000392456 LINC01556Q5JQF7 62 aa12.48□□□□□ -0.41
CCDC50-202ENST00000392456 LINC00575Q6W349 94 aa12.48□□□□□ -0.41
CCDC50-202ENST00000392456 C7orf65Q6ZTY9 151 aa12.48□□□□□ -0.41
CCDC50-202ENST00000392456 HCG22E2RYF7 251 aa12.47□□□□□ -0.41
CCDC50-202ENST00000392456 Q8N9L7 120 aa12.47□□□□□ -0.41
CCDC50-202ENST00000392456 DIRC1Q969H9 104 aa12.47□□□□□ -0.41
CCDC50-202ENST00000392456 CHKB-CPT1BH3BT56 60 aa12.46□□□□□ -0.41
CCDC50-202ENST00000392456 APLNQ9ULZ1 77 aa12.46□□□□□ -0.42
CCDC50-202ENST00000392456 DNAH10OSP0CZ25 163 aa12.45□□□□□ -0.42
CCDC50-202ENST00000392456 LCA10Q71F78 164 aa12.45□□□□□ -0.42
CCDC50-202ENST00000392456 ZCCHC13Q8WW36 166 aaKnown RBP12.45□□□□□ -0.42
CCDC50-202ENST00000392456 KRTAP26-1Q6PEX3 210 aa12.44□□□□□ -0.42
CCDC50-202ENST00000392456 C6orf99Q4VX62 202 aa12.42□□□□□ -0.42
CCDC50-202ENST00000392456 PRR3P79522 188 aaKnown RBP12.42□□□□□ -0.42
CCDC50-202ENST00000392456 KIAA0087Q14695 138 aa12.42□□□□□ -0.42
CCDC50-202ENST00000392456 DNAH10Q8IVF4 4471 aa12.41□□□□□ -0.42
CCDC50-202ENST00000392456 Q8IZM0 81 aa12.38□□□□□ -0.43
CCDC50-202ENST00000392456 IGKV2D-24A0A075B6R9 120 aa12.37□□□□□ -0.43
CCDC50-202ENST00000392456 FAM30AQ9NZY2 134 aa12.37□□□□□ -0.43
CCDC50-202ENST00000392456 KRTAP1-5Q9BYS1 174 aa12.36□□□□□ -0.43
CCDC50-202ENST00000392456 LIMD2Q9BT23 127 aa12.36□□□□□ -0.43
CCDC50-202ENST00000392456 NUPR2A6NF83 97 aa12.35□□□□□ -0.43
CCDC50-202ENST00000392456 H3BQ85 93 aa12.35□□□□□ -0.43
CCDC50-202ENST00000392456 Q8N9P0 234 aaPredicted RBP12.35□□□□□ -0.43
CCDC50-202ENST00000392456 C10orf25Q5T742 122 aa12.34□□□□□ -0.43
CCDC50-202ENST00000392456 CASC10Q5T4H9 136 aa12.34□□□□□ -0.43
CCDC50-202ENST00000392456 PRR26Q8N8Z3 221 aa12.34□□□□□ -0.43
CCDC50-202ENST00000392456 C9orf116Q5BN46 136 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms