RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 LINC00476Q8WZB0 136 aa6.91□□□□□ -1.3
COL6A3-205ENST00000392004 RBM3P98179 157 aaKnown RBP6.9□□□□□ -1.3
COL6A3-205ENST00000392004 FAM19A3Q7Z5A8 133 aa6.9□□□□□ -1.3
COL6A3-205ENST00000392004 C22orf24Q9Y442 160 aa6.9□□□□□ -1.31
COL6A3-205ENST00000392004 LINC00612Q8N6U2 182 aa6.89□□□□□ -1.31
COL6A3-205ENST00000392004 Q8IZM0 81 aa6.89□□□□□ -1.31
COL6A3-205ENST00000392004 ANK3Q12955 4377 aaKnown RBP6.89□□□□□ -1.31
COL6A3-205ENST00000392004 GHRHP01286 108 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 TNP2Q05952 138 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 C6orf99Q4VX62 202 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 JMJD7-PLA2G4BH0Y9G9 81 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 RTL8CO15255 209 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 C4orf26Q17RF5 130 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 C20orf197Q8N268 126 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 UBL5Q9BZL1 73 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 FBN3Q75N90 2809 aa6.88□□□□□ -1.31
COL6A3-205ENST00000392004 BRK1Q8WUW1 75 aa6.87□□□□□ -1.31
COL6A3-205ENST00000392004 FAM236DA0A1B0GTK5 79 aa6.87□□□□□ -1.31
COL6A3-205ENST00000392004 CCKP06307 115 aa6.87□□□□□ -1.31
COL6A3-205ENST00000392004 FAM236CP0DP71 79 aa6.87□□□□□ -1.31
COL6A3-205ENST00000392004 TRAV23DV6A0A075B6W5 121 aa6.86□□□□□ -1.31
COL6A3-205ENST00000392004 ATP5EP2Q5VTU8 51 aa6.86□□□□□ -1.31
COL6A3-205ENST00000392004 DIRC1Q969H9 104 aa6.86□□□□□ -1.31
COL6A3-205ENST00000392004 C9orf129Q5T035 196 aaKnown RBP6.86□□□□□ -1.31
COL6A3-205ENST00000392004 C1orf137Q5JT78 98 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 LINC01561Q8N1V8 128 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 NDUFC2O95298 119 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 C6orf48Q9UBA6 75 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 A0A0U1RQV1 116 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 NDUFC2-KCTD14E9PQ53 114 aa6.85□□□□□ -1.31
COL6A3-205ENST00000392004 TMEM256-PLSCR3K7ERE1 68 aa6.84□□□□□ -1.31
COL6A3-205ENST00000392004 PRLHP81277 87 aa6.84□□□□□ -1.31
COL6A3-205ENST00000392004 TRBV10-3A0A0K0K1G6 114 aa6.83□□□□□ -1.32
COL6A3-205ENST00000392004 OBSCN-AS1Q96MR7 158 aa6.83□□□□□ -1.32
COL6A3-205ENST00000392004 CYSTM1Q9H1C7 97 aa6.83□□□□□ -1.32
COL6A3-205ENST00000392004 FAM168BA1KXE4 195 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 PHF5AQ7RTV0 110 aaKnown RBP6.82□□□□□ -1.32
COL6A3-205ENST00000392004 KRTAP1-5Q9BYS1 174 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 A0A087WTM6 91 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 IGLV9-49A0A0B4J1Y8 123 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 COX7BP24311 80 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 UPK3BQ9BT76 320 aa6.82□□□□□ -1.32
COL6A3-205ENST00000392004 KRTAP21-3Q3LHN1 58 aa6.81□□□□□ -1.32
COL6A3-205ENST00000392004 Q8N814 137 aa6.8□□□□□ -1.32
COL6A3-205ENST00000392004 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
COL6A3-205ENST00000392004 M0R378 163 aa6.78□□□□□ -1.32
COL6A3-205ENST00000392004 Q6ZRP5 223 aa6.78□□□□□ -1.32
COL6A3-205ENST00000392004 LINC00474Q9P2X8 69 aa6.78□□□□□ -1.32
COL6A3-205ENST00000392004 AKAP9Q99996 3911 aa6.78□□□□□ -1.32
COL6A3-205ENST00000392004 MRPL55Q7Z7F7 128 aaKnown RBP6.77□□□□□ -1.33
COL6A3-205ENST00000392004 Q6ZQY7 126 aa6.77□□□□□ -1.33
COL6A3-205ENST00000392004 PRR34Q9NV39 138 aa6.77□□□□□ -1.33
COL6A3-205ENST00000392004 SMIM26A0A096LP01 95 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 C15orf56Q8N910 161 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 SERP1Q9Y6X1 66 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 ZNF73O43830 326 aaPredicted RBP6.76□□□□□ -1.33
COL6A3-205ENST00000392004 TRAV7A0A075B6U4 112 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 CDK2AP2O75956 126 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 SPINK6Q6UWN8 80 aa6.76□□□□□ -1.33
COL6A3-205ENST00000392004 LINC00167Q96N53 147 aa6.75□□□□□ -1.33
COL6A3-205ENST00000392004 OXTP01178 125 aa6.74□□□□□ -1.33
COL6A3-205ENST00000392004 MPLKIPQ8TAP9 179 aa6.74□□□□□ -1.33
COL6A3-205ENST00000392004 COX17Q14061 63 aa6.73□□□□□ -1.33
COL6A3-205ENST00000392004 BCE1O60756 84 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 REG3GQ6UW15 175 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 SNURFQ9Y675 71 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 PDE6GP18545 87 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 LINC00336Q6ZUF6 198 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 CIRBP-AS1Q8TBR5 109 aa6.72□□□□□ -1.33
COL6A3-205ENST00000392004 SERTAD4-AS1Q5TG53 156 aa6.71□□□□□ -1.33
COL6A3-205ENST00000392004 Q5XG85 94 aa6.71□□□□□ -1.33
COL6A3-205ENST00000392004 GVQW2A0A096LPI5 108 aaPredicted RBP6.71□□□□□ -1.34
COL6A3-205ENST00000392004 FAM229AH3BQW9 127 aa6.71□□□□□ -1.34
COL6A3-205ENST00000392004 LINC00575Q6W349 94 aa6.71□□□□□ -1.34
COL6A3-205ENST00000392004 LINC01547P58512 204 aaPredicted RBP6.7□□□□□ -1.34
COL6A3-205ENST00000392004 LCE6AA0A183 80 aa6.7□□□□□ -1.34
COL6A3-205ENST00000392004 H3BQ85 93 aa6.7□□□□□ -1.34
COL6A3-205ENST00000392004 Q6ZQT0 140 aa6.7□□□□□ -1.34
COL6A3-205ENST00000392004 Q6ZVQ6 151 aa6.69□□□□□ -1.34
COL6A3-205ENST00000392004 VPREB1P12018 145 aa6.69□□□□□ -1.34
COL6A3-205ENST00000392004 KIAA0087Q14695 138 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 PMAIP1Q13794 54 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 MEGF8Q7Z7M0 2845 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 LOC110117498A0A087WWA1 95 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 C9orf163Q8N9P6 203 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 ANAPC11Q9NYG5 84 aa6.68□□□□□ -1.34
COL6A3-205ENST00000392004 H7BZZ5 65 aa6.67□□□□□ -1.34
COL6A3-205ENST00000392004 NDUFC1O43677 76 aa6.67□□□□□ -1.34
COL6A3-205ENST00000392004 ATP5EP56381 51 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-205ENST00000392004 A0A1W2PNN7 141 aa6.67□□□□□ -1.34
COL6A3-205ENST00000392004 KRTAP10-2P60368 255 aa6.67□□□□□ -1.34
COL6A3-205ENST00000392004 SCXQ7RTU7 201 aa6.67□□□□□ -1.34
COL6A3-205ENST00000392004 CXCL6P80162 114 aa6.66□□□□□ -1.34
COL6A3-205ENST00000392004 CD164Q04900 197 aa6.66□□□□□ -1.34
COL6A3-205ENST00000392004 KLKP1Q107X0 134 aa6.66□□□□□ -1.34
COL6A3-205ENST00000392004 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.66□□□□□ -1.34
COL6A3-205ENST00000392004 H3BS24 57 aa6.64□□□□□ -1.35
COL6A3-205ENST00000392004 DNHD1Q96M86 4753 aa6.64□□□□□ -1.35
COL6A3-205ENST00000392004 NDUFS5O43920 106 aa6.63□□□□□ -1.35
COL6A3-205ENST00000392004 TRBV7-6A0A0J9YX20 115 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms