RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 C9orf129Q5T035 196 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-204ENST00000389857 TLX1NBP0CAT3 122 aa8.42□□□□□ -1.06
CCDC88C-204ENST00000389857 KLKP1Q107X0 134 aa8.42□□□□□ -1.06
CCDC88C-204ENST00000389857 CDC42SE1Q9NRR8 79 aa8.41□□□□□ -1.06
CCDC88C-204ENST00000389857 Q8N377 158 aa8.41□□□□□ -1.06
CCDC88C-204ENST00000389857 PRR34Q9NV39 138 aa8.41□□□□□ -1.06
CCDC88C-204ENST00000389857 KRTAP10-11P60412 298 aa8.4□□□□□ -1.06
CCDC88C-204ENST00000389857 A0A087WTM6 91 aa8.4□□□□□ -1.07
CCDC88C-204ENST00000389857 K7EIL1 84 aa8.39□□□□□ -1.07
CCDC88C-204ENST00000389857 JMJD1CQ15652 2540 aa8.38□□□□□ -1.07
CCDC88C-204ENST00000389857 FN1P02751 2386 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-204ENST00000389857 IGLV7-43P04211 117 aa8.38□□□□□ -1.07
CCDC88C-204ENST00000389857 C19orf73Q9NVV2 129 aa8.38□□□□□ -1.07
CCDC88C-204ENST00000389857 LINC00336Q6ZUF6 198 aa8.37□□□□□ -1.07
CCDC88C-204ENST00000389857 KTN1-AS1Q86SY8 53 aa8.35□□□□□ -1.07
CCDC88C-204ENST00000389857 FAM104AQ969W3 186 aa8.35□□□□□ -1.07
CCDC88C-204ENST00000389857 LINC01554Q52M75 96 aa8.34□□□□□ -1.07
CCDC88C-204ENST00000389857 SPANXA2-OT1Q8N9U9 137 aa8.34□□□□□ -1.07
CCDC88C-204ENST00000389857 C9orf163Q8N9P6 203 aa8.34□□□□□ -1.07
CCDC88C-204ENST00000389857 CHD7Q9P2D1 2997 aa8.34□□□□□ -1.07
CCDC88C-204ENST00000389857 CD164Q04900 197 aa8.34□□□□□ -1.07
CCDC88C-204ENST00000389857 ABCA12Q86UK0 2595 aa8.33□□□□□ -1.08
CCDC88C-204ENST00000389857 LCA10Q71F78 164 aa8.33□□□□□ -1.08
CCDC88C-204ENST00000389857 A0A0D9SG42 100 aa8.32□□□□□ -1.08
CCDC88C-204ENST00000389857 TLN2Q9Y4G6 2542 aa8.32□□□□□ -1.08
CCDC88C-204ENST00000389857 SMR3BP02814 79 aaPredicted RBP8.32□□□□□ -1.08
CCDC88C-204ENST00000389857 SPRR4Q96PI1 79 aa8.32□□□□□ -1.08
CCDC88C-204ENST00000389857 CHD9Q3L8U1 2897 aa8.32□□□□□ -1.08
CCDC88C-204ENST00000389857 LUZP6Q538Z0 58 aa8.31□□□□□ -1.08
CCDC88C-204ENST00000389857 ACANP16112 2415 aa8.31□□□□□ -1.08
CCDC88C-204ENST00000389857 PSORS1C2Q9UIG4 136 aa8.3□□□□□ -1.08
CCDC88C-204ENST00000389857 ANKRD11Q6UB99 2663 aaPredicted RBP8.3□□□□□ -1.08
CCDC88C-204ENST00000389857 ZNF462Q96JM2 2506 aa8.3□□□□□ -1.08
CCDC88C-204ENST00000389857 H7BZZ5 65 aa8.29□□□□□ -1.08
CCDC88C-204ENST00000389857 ANAPC11Q9NYG5 84 aa8.29□□□□□ -1.08
CCDC88C-204ENST00000389857 IGLV5-48A0A075B6I7 105 aa8.29□□□□□ -1.08
CCDC88C-204ENST00000389857 CNBPP62633 177 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-204ENST00000389857 LINC00612Q8N6U2 182 aa8.28□□□□□ -1.08
CCDC88C-204ENST00000389857 A0A0G2JQZ4 141 aa8.28□□□□□ -1.08
CCDC88C-204ENST00000389857 A0A1W2PNN7 141 aa8.28□□□□□ -1.08
CCDC88C-204ENST00000389857 Q8N1X5 172 aa8.27□□□□□ -1.09
CCDC88C-204ENST00000389857 ANKRD17O75179 2603 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-204ENST00000389857 ZNF575Q86XF7 245 aa8.25□□□□□ -1.09
CCDC88C-204ENST00000389857 USP9XQ93008 2570 aaPredicted RBP8.25□□□□□ -1.09
CCDC88C-204ENST00000389857 EIF4EBP3O60516 100 aaPredicted RBP8.25□□□□□ -1.09
CCDC88C-204ENST00000389857 LINC00483Q53H64 154 aa8.23□□□□□ -1.09
CCDC88C-204ENST00000389857 GIG44P09565 113 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-204ENST00000389857 SPTBN4Q9H254 2564 aa8.22□□□□□ -1.09
CCDC88C-204ENST00000389857 KRTAP10-3P60369 221 aa8.22□□□□□ -1.09
CCDC88C-204ENST00000389857 TRANK1O15050 2925 aa8.22□□□□□ -1.09
CCDC88C-204ENST00000389857 M0R2T5 61 aa8.21□□□□□ -1.09
CCDC88C-204ENST00000389857 Q6ZSA8 131 aa8.21□□□□□ -1.09
CCDC88C-204ENST00000389857 CEP295Q9C0D2 2601 aa8.21□□□□□ -1.09
CCDC88C-204ENST00000389857 A0A1W2PNM2 257 aa8.2□□□□□ -1.1
CCDC88C-204ENST00000389857 SETD2Q9BYW2 2564 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-204ENST00000389857 Q1T7F1 81 aa8.18□□□□□ -1.1
CCDC88C-204ENST00000389857 USP9YO00507 2555 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-204ENST00000389857 CAMK2N1Q7Z7J9 78 aa8.16□□□□□ -1.1
CCDC88C-204ENST00000389857 A0A096LNT2 108 aa8.15□□□□□ -1.1
CCDC88C-204ENST00000389857 CASC10Q5T4H9 136 aa8.15□□□□□ -1.11
CCDC88C-204ENST00000389857 PRR26Q8N8Z3 221 aa8.14□□□□□ -1.11
CCDC88C-204ENST00000389857 CHD8Q9HCK8 2581 aa8.12□□□□□ -1.11
CCDC88C-204ENST00000389857 IGLV7-46A0A075B6I9 117 aa8.12□□□□□ -1.11
CCDC88C-204ENST00000389857 A0A1B0GU33 70 aa8.11□□□□□ -1.11
CCDC88C-204ENST00000389857 CR1P17927 2039 aa8.1□□□□□ -1.11
CCDC88C-204ENST00000389857 HRES1P13985 223 aa8.08□□□□□ -1.12
CCDC88C-204ENST00000389857 OCR1Q9BZK8 76 aa8.08□□□□□ -1.12
CCDC88C-204ENST00000389857 PKD1L2Q7Z442 2459 aa8.07□□□□□ -1.12
CCDC88C-204ENST00000389857 RANBP2P49792 3224 aaKnown RBP8.07□□□□□ -1.12
CCDC88C-204ENST00000389857 A0A0C4DFX4 3053 aa8.07□□□□□ -1.12
CCDC88C-204ENST00000389857 FAM229BQ4G0N7 80 aa8.06□□□□□ -1.12
CCDC88C-204ENST00000389857 S4R3F8 94 aa8.05□□□□□ -1.12
CCDC88C-204ENST00000389857 Q75L30 129 aa8.05□□□□□ -1.12
CCDC88C-204ENST00000389857 C5orf42Q9H799 3197 aa8.04□□□□□ -1.12
CCDC88C-204ENST00000389857 FASNP49327 2511 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-204ENST00000389857 PRRC2CQ9Y520 2896 aaKnown RBP8.04□□□□□ -1.12
CCDC88C-204ENST00000389857 DMAC1Q96GE9 116 aa8.03□□□□□ -1.12
CCDC88C-204ENST00000389857 MTORP42345 2549 aa8.03□□□□□ -1.12
CCDC88C-204ENST00000389857 TNP2Q05952 138 aa8.02□□□□□ -1.12
CCDC88C-204ENST00000389857 BRCA2P51587 3418 aa8.01□□□□□ -1.13
CCDC88C-204ENST00000389857 CSAG1Q6PB30 78 aa8□□□□□ -1.13
CCDC88C-204ENST00000389857 ZCCHC13Q8WW36 166 aaKnown RBP8□□□□□ -1.13
CCDC88C-204ENST00000389857 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.97□□□□□ -1.13
CCDC88C-204ENST00000389857 KRTAP1-3Q8IUG1 177 aa7.97□□□□□ -1.13
CCDC88C-204ENST00000389857 POLQO75417 2590 aa7.96□□□□□ -1.13
CCDC88C-204ENST00000389857 MKI67P46013 3256 aaKnown RBP7.96□□□□□ -1.13
CCDC88C-204ENST00000389857 LAMA2P24043 3122 aaKnown RBP7.96□□□□□ -1.14
CCDC88C-204ENST00000389857 LINC01558Q9Y6Z2 57 aa7.94□□□□□ -1.14
CCDC88C-204ENST00000389857 PLAC8Q9NZF1 115 aa7.93□□□□□ -1.14
CCDC88C-204ENST00000389857 A0A0A0MQY5 61 aa7.91□□□□□ -1.14
CCDC88C-204ENST00000389857 MMP24-AS1A0A0U1RRL7 71 aa7.91□□□□□ -1.14
CCDC88C-204ENST00000389857 KRTAP1-1Q07627 177 aa7.91□□□□□ -1.14
CCDC88C-204ENST00000389857 LAMA3Q16787 3333 aa7.9□□□□□ -1.15
CCDC88C-204ENST00000389857 R4GN34 69 aa7.88□□□□□ -1.15
CCDC88C-204ENST00000389857 WIPF1O43516 503 aa7.87□□□□□ -1.15
CCDC88C-204ENST00000389857 SEC61BP60468 96 aaKnown RBP7.86□□□□□ -1.15
CCDC88C-204ENST00000389857 Q5W150 140 aa7.86□□□□□ -1.15
CCDC88C-204ENST00000389857 FLG2Q5D862 2391 aaPredicted RBP7.86□□□□□ -1.15
CCDC88C-204ENST00000389857 Q8N9P0 234 aaPredicted RBP7.85□□□□□ -1.15
CCDC88C-204ENST00000389857 SPRR1AP35321 89 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms