RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RPS28P62857 69 aaKnown RBP8.06□□□□□ -1.12
COL9A1-202ENST00000357250 C1orf64Q8NEQ6 169 aa8.05□□□□□ -1.12
COL9A1-202ENST00000357250 STAB1Q9NY15 2570 aa8.05□□□□□ -1.12
COL9A1-202ENST00000357250 PCOTHQ58A44 107 aa8.05□□□□□ -1.12
COL9A1-202ENST00000357250 Q8NBF4 154 aa8.05□□□□□ -1.12
COL9A1-202ENST00000357250 LRBAP50851 2863 aa8.05□□□□□ -1.12
COL9A1-202ENST00000357250 Q6ZQT0 140 aa8.04□□□□□ -1.12
COL9A1-202ENST00000357250 GCN1Q92616 2671 aaKnown RBP8.04□□□□□ -1.12
COL9A1-202ENST00000357250 FAM218AQ96MZ4 157 aa8.04□□□□□ -1.12
COL9A1-202ENST00000357250 Q6ZRX8 168 aa8.03□□□□□ -1.12
COL9A1-202ENST00000357250 UBR5O95071 2799 aaPredicted RBP8.03□□□□□ -1.12
COL9A1-202ENST00000357250 Q8NAQ8 132 aa8.02□□□□□ -1.13
COL9A1-202ENST00000357250 MUC3AQ02505 3323 aa8.02□□□□□ -1.13
COL9A1-202ENST00000357250 UNC79Q9P2D8 2635 aa8.01□□□□□ -1.13
COL9A1-202ENST00000357250 NOTCH1P46531 2555 aa8.01□□□□□ -1.13
COL9A1-202ENST00000357250 SMIM29Q86T20 159 aa8.01□□□□□ -1.13
COL9A1-202ENST00000357250 LITAFQ99732 161 aa8.01□□□□□ -1.13
COL9A1-202ENST00000357250 COL6A5A8TX70 2615 aa8.01□□□□□ -1.13
COL9A1-202ENST00000357250 DEFB116Q30KQ4 102 aa8□□□□□ -1.13
COL9A1-202ENST00000357250 MDFIQ99750 246 aa8□□□□□ -1.13
COL9A1-202ENST00000357250 C16orf90A8MZG2 172 aa7.99□□□□□ -1.13
COL9A1-202ENST00000357250 ITPR1Q14643 2758 aa7.98□□□□□ -1.13
COL9A1-202ENST00000357250 PSPHP1O15172 72 aa7.98□□□□□ -1.13
COL9A1-202ENST00000357250 A0A096LNT2 108 aa7.97□□□□□ -1.13
COL9A1-202ENST00000357250 IGLV6-57P01721 117 aa7.97□□□□□ -1.13
COL9A1-202ENST00000357250 DNAH10OSP0CZ25 163 aa7.97□□□□□ -1.13
COL9A1-202ENST00000357250 LINC00476Q8WZB0 136 aa7.97□□□□□ -1.13
COL9A1-202ENST00000357250 TRBV7-4A0A0J9YYF1 115 aa7.96□□□□□ -1.13
COL9A1-202ENST00000357250 ACYP2P14621 99 aa7.96□□□□□ -1.14
COL9A1-202ENST00000357250 PRO0628Q9UI54 55 aa7.96□□□□□ -1.14
COL9A1-202ENST00000357250 WDFY3Q8IZQ1 3526 aa7.96□□□□□ -1.14
COL9A1-202ENST00000357250 ERC2-IT1O76042 136 aa7.94□□□□□ -1.14
COL9A1-202ENST00000357250 VPREB1P12018 145 aa7.94□□□□□ -1.14
COL9A1-202ENST00000357250 MOBPQ13875 183 aa7.94□□□□□ -1.14
COL9A1-202ENST00000357250 NBDYA0A0U1RRE5 68 aa7.94□□□□□ -1.14
COL9A1-202ENST00000357250 NBEAL2Q6ZNJ1 2754 aa7.94□□□□□ -1.14
COL9A1-202ENST00000357250 KRTAP24-1Q3LI83 254 aa7.93□□□□□ -1.14
COL9A1-202ENST00000357250 TRAV22A0A0B4J277 110 aa7.93□□□□□ -1.14
COL9A1-202ENST00000357250 LINC00588Q9Y4M8 146 aa7.92□□□□□ -1.14
COL9A1-202ENST00000357250 NBEAL1Q6ZS30 2694 aa7.92□□□□□ -1.14
COL9A1-202ENST00000357250 CSNK1G2-AS1Q8NCQ2 148 aa7.92□□□□□ -1.14
COL9A1-202ENST00000357250 Q6ZRP5 223 aa7.92□□□□□ -1.14
COL9A1-202ENST00000357250 EPM2AB3EWF7 344 aa7.91□□□□□ -1.14
COL9A1-202ENST00000357250 IGKV2D-30A0A075B6S6 120 aa7.9□□□□□ -1.14
COL9A1-202ENST00000357250 SPINK1P00995 79 aa7.9□□□□□ -1.14
COL9A1-202ENST00000357250 IGKV2-30P06310 120 aa7.9□□□□□ -1.14
COL9A1-202ENST00000357250 RETNLBQ9BQ08 111 aa7.9□□□□□ -1.14
COL9A1-202ENST00000357250 KCNQ1DNQ9H478 68 aa7.9□□□□□ -1.15
COL9A1-202ENST00000357250 DCHS1Q96JQ0 3298 aa7.89□□□□□ -1.15
COL9A1-202ENST00000357250 A0A1B0GU69 56 aa7.89□□□□□ -1.15
COL9A1-202ENST00000357250 PRR34Q9NV39 138 aa7.89□□□□□ -1.15
COL9A1-202ENST00000357250 C8orf87E5RJ46 101 aa7.88□□□□□ -1.15
COL9A1-202ENST00000357250 PHF5AQ7RTV0 110 aaKnown RBP7.88□□□□□ -1.15
COL9A1-202ENST00000357250 ITPR2Q14571 2701 aa7.88□□□□□ -1.15
COL9A1-202ENST00000357250 RTL8CO15255 209 aa7.88□□□□□ -1.15
COL9A1-202ENST00000357250 ASPMQ8IZT6 3477 aa7.88□□□□□ -1.15
COL9A1-202ENST00000357250 LOC101927531A0A1B0GV80 90 aa7.87□□□□□ -1.15
COL9A1-202ENST00000357250 C7orf65Q6ZTY9 151 aa7.87□□□□□ -1.15
COL9A1-202ENST00000357250 LINC00612Q8N6U2 182 aa7.87□□□□□ -1.15
COL9A1-202ENST00000357250 LINC00528Q8N1L1 170 aa7.87□□□□□ -1.15
COL9A1-202ENST00000357250 KRTAP1-3Q8IUG1 177 aa7.86□□□□□ -1.15
COL9A1-202ENST00000357250 SPACA4Q8TDM5 124 aa7.86□□□□□ -1.15
COL9A1-202ENST00000357250 A8MWP4 228 aa7.86□□□□□ -1.15
COL9A1-202ENST00000357250 LINC00313P59037 77 aa7.86□□□□□ -1.15
COL9A1-202ENST00000357250 ZANQ9Y493 2812 aa7.85□□□□□ -1.15
COL9A1-202ENST00000357250 IGLV1-50A0A075B6I6 118 aa7.85□□□□□ -1.15
COL9A1-202ENST00000357250 TM2D3Q9BRN9 247 aa7.85□□□□□ -1.15
COL9A1-202ENST00000357250 ASH1LQ9NR48 2969 aaKnown RBP7.85□□□□□ -1.15
COL9A1-202ENST00000357250 ST20-AS1Q8NBB2 130 aa7.85□□□□□ -1.15
COL9A1-202ENST00000357250 FAM229AH3BQW9 127 aa7.84□□□□□ -1.15
COL9A1-202ENST00000357250 UTP20O75691 2785 aaKnown RBP7.83□□□□□ -1.16
COL9A1-202ENST00000357250 KRTAP10-3P60369 221 aa7.83□□□□□ -1.16
COL9A1-202ENST00000357250 PLA2G2DQ9UNK4 145 aa7.83□□□□□ -1.16
COL9A1-202ENST00000357250 C19orf73Q9NVV2 129 aa7.82□□□□□ -1.16
COL9A1-202ENST00000357250 TLX1NBP0CAT3 122 aa7.82□□□□□ -1.16
COL9A1-202ENST00000357250 RPL37AP61513 92 aaKnown RBP7.8□□□□□ -1.16
COL9A1-202ENST00000357250 TYMSOSQ8TAI1 123 aa7.8□□□□□ -1.16
COL9A1-202ENST00000357250 RELNP78509 3460 aa7.8□□□□□ -1.16
COL9A1-202ENST00000357250 LAMA5O15230 3695 aa7.8□□□□□ -1.16
COL9A1-202ENST00000357250 BAHCC1Q9P281 2608 aa7.8□□□□□ -1.16
COL9A1-202ENST00000357250 MRPL34Q9BQ48 92 aaKnown RBP7.79□□□□□ -1.16
COL9A1-202ENST00000357250 KRTAP1-1Q07627 177 aa7.79□□□□□ -1.16
COL9A1-202ENST00000357250 GIG44P09565 113 aaPredicted RBP7.78□□□□□ -1.16
COL9A1-202ENST00000357250 KLKP1Q107X0 134 aa7.78□□□□□ -1.16
COL9A1-202ENST00000357250 SERTAD4-AS1Q5TG53 156 aa7.78□□□□□ -1.16
COL9A1-202ENST00000357250 CYP4F30PQ9H0H9 118 aa7.78□□□□□ -1.16
COL9A1-202ENST00000357250 NSD1Q96L73 2696 aaPredicted RBP7.77□□□□□ -1.16
COL9A1-202ENST00000357250 SSBP3-AS1Q7Z2R9 100 aa7.77□□□□□ -1.17
COL9A1-202ENST00000357250 CRYBG3Q68DQ2 2970 aa7.77□□□□□ -1.17
COL9A1-202ENST00000357250 DMDP11532 3685 aa7.77□□□□□ -1.17
COL9A1-202ENST00000357250 WWC2-AS2Q96NR7 200 aa7.77□□□□□ -1.17
COL9A1-202ENST00000357250 SPAG11AQ6PDA7 123 aa7.77□□□□□ -1.17
COL9A1-202ENST00000357250 C15orf56Q8N910 161 aa7.76□□□□□ -1.17
COL9A1-202ENST00000357250 K7EQZ3 153 aa7.76□□□□□ -1.17
COL9A1-202ENST00000357250 CHTF8P0CG12 524 aa7.75□□□□□ -1.17
COL9A1-202ENST00000357250 C4orf26Q17RF5 130 aa7.75□□□□□ -1.17
COL9A1-202ENST00000357250 EIF4EBP3O60516 100 aaPredicted RBP7.75□□□□□ -1.17
COL9A1-202ENST00000357250 PRR15Q8IV56 129 aa7.75□□□□□ -1.17
COL9A1-202ENST00000357250 IGFL1Q6UW32 110 aa7.74□□□□□ -1.17
COL9A1-202ENST00000357250 FAM168BA1KXE4 195 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms