RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 HECTD1Q9ULT8 2610 aa13.06□□□□□ -0.32
CCDC88B-202ENST00000356786 Q8NAQ8 132 aa13.05□□□□□ -0.32
CCDC88B-202ENST00000356786 IGLV8-61A0A075B6I0 122 aa13.05□□□□□ -0.32
CCDC88B-202ENST00000356786 A8MWP4 228 aa13.04□□□□□ -0.32
CCDC88B-202ENST00000356786 MGAM2Q2M2H8 2515 aa13.02□□□□□ -0.33
CCDC88B-202ENST00000356786 SPACA4Q8TDM5 124 aa13.01□□□□□ -0.33
CCDC88B-202ENST00000356786 KCNQ1DNQ9H478 68 aa13.01□□□□□ -0.33
CCDC88B-202ENST00000356786 FAM168BA1KXE4 195 aa13.01□□□□□ -0.33
CCDC88B-202ENST00000356786 C1orf134Q5TEV5 83 aa13□□□□□ -0.33
CCDC88B-202ENST00000356786 CENPEQ02224 2701 aa13□□□□□ -0.33
CCDC88B-202ENST00000356786 LOC101927531A0A1B0GV80 90 aa12.99□□□□□ -0.33
CCDC88B-202ENST00000356786 C16orf90A8MZG2 172 aa12.99□□□□□ -0.33
CCDC88B-202ENST00000356786 Q8N377 158 aa12.97□□□□□ -0.33
CCDC88B-202ENST00000356786 CSNK1G2-AS1Q8NCQ2 148 aa12.97□□□□□ -0.33
CCDC88B-202ENST00000356786 VPS13AQ96RL7 3174 aa12.96□□□□□ -0.33
CCDC88B-202ENST00000356786 CHTF8P0CG12 524 aa12.95□□□□□ -0.34
CCDC88B-202ENST00000356786 IGLV1-50A0A075B6I6 118 aa12.95□□□□□ -0.34
CCDC88B-202ENST00000356786 CD164Q04900 197 aa12.95□□□□□ -0.34
CCDC88B-202ENST00000356786 IGFL1Q6UW32 110 aa12.94□□□□□ -0.34
CCDC88B-202ENST00000356786 LINC01600Q96MT4 127 aa12.94□□□□□ -0.34
CCDC88B-202ENST00000356786 LINC00588Q9Y4M8 146 aa12.93□□□□□ -0.34
CCDC88B-202ENST00000356786 ZNF575Q86XF7 245 aa12.93□□□□□ -0.34
CCDC88B-202ENST00000356786 LINC00313P59037 77 aa12.93□□□□□ -0.34
CCDC88B-202ENST00000356786 PRR15Q8IV56 129 aa12.92□□□□□ -0.34
CCDC88B-202ENST00000356786 ATRQ13535 2644 aa12.92□□□□□ -0.34
CCDC88B-202ENST00000356786 MRPL34Q9BQ48 92 aaKnown RBP12.92□□□□□ -0.34
CCDC88B-202ENST00000356786 PRR34Q9NV39 138 aa12.91□□□□□ -0.34
CCDC88B-202ENST00000356786 MDFIQ99750 246 aa12.9□□□□□ -0.34
CCDC88B-202ENST00000356786 A0A0G2JQZ4 141 aa12.9□□□□□ -0.35
CCDC88B-202ENST00000356786 A0A1W2PNN7 141 aa12.9□□□□□ -0.35
CCDC88B-202ENST00000356786 LAMA1P25391 3075 aa12.88□□□□□ -0.35
CCDC88B-202ENST00000356786 A0A096LNT2 108 aa12.88□□□□□ -0.35
CCDC88B-202ENST00000356786 GIG44P09565 113 aaPredicted RBP12.88□□□□□ -0.35
CCDC88B-202ENST00000356786 UQCR11O14957 56 aa12.87□□□□□ -0.35
CCDC88B-202ENST00000356786 DNAH10OSP0CZ25 163 aa12.87□□□□□ -0.35
CCDC88B-202ENST00000356786 OBSCN-AS1Q96MR7 158 aa12.87□□□□□ -0.35
CCDC88B-202ENST00000356786 FAM229AH3BQW9 127 aa12.85□□□□□ -0.35
CCDC88B-202ENST00000356786 KTN1-AS1Q86SY8 53 aa12.84□□□□□ -0.35
CCDC88B-202ENST00000356786 AKAP13Q12802 2813 aa12.84□□□□□ -0.35
CCDC88B-202ENST00000356786 C15orf56Q8N910 161 aa12.84□□□□□ -0.35
CCDC88B-202ENST00000356786 VCANP13611 3396 aa12.83□□□□□ -0.36
CCDC88B-202ENST00000356786 WIPF1O43516 503 aa12.82□□□□□ -0.36
CCDC88B-202ENST00000356786 A0A1W2PNM2 257 aa12.82□□□□□ -0.36
CCDC88B-202ENST00000356786 FLNAP21333 2647 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-202ENST00000356786 C8orf17Q9NRJ1 99 aa12.81□□□□□ -0.36
CCDC88B-202ENST00000356786 DSPP15924 2871 aaKnown RBP12.79□□□□□ -0.36
CCDC88B-202ENST00000356786 MAST4O15021 2626 aa12.79□□□□□ -0.36
CCDC88B-202ENST00000356786 C19orf73Q9NVV2 129 aa12.78□□□□□ -0.36
CCDC88B-202ENST00000356786 DNAH14Q0VDD8 3507 aa12.78□□□□□ -0.36
CCDC88B-202ENST00000356786 CFAP46Q8IYW2 2715 aa12.77□□□□□ -0.37
CCDC88B-202ENST00000356786 ITPR3Q14573 2671 aa12.76□□□□□ -0.37
CCDC88B-202ENST00000356786 MIR22HGQ0VDD5 57 aa12.76□□□□□ -0.37
CCDC88B-202ENST00000356786 SPINT4Q6UDR6 99 aa12.76□□□□□ -0.37
CCDC88B-202ENST00000356786 NBDYA0A0U1RRE5 68 aa12.75□□□□□ -0.37
CCDC88B-202ENST00000356786 LINC00612Q8N6U2 182 aa12.75□□□□□ -0.37
CCDC88B-202ENST00000356786 OCR1Q9BZK8 76 aa12.74□□□□□ -0.37
CCDC88B-202ENST00000356786 RTL8CO15255 209 aa12.74□□□□□ -0.37
CCDC88B-202ENST00000356786 SSBP3-AS1Q7Z2R9 100 aa12.73□□□□□ -0.37
CCDC88B-202ENST00000356786 HELZ2Q9BYK8 2649 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-202ENST00000356786 LCA10Q71F78 164 aa12.73□□□□□ -0.37
CCDC88B-202ENST00000356786 A0A1B0GVX0 72 aa12.71□□□□□ -0.37
CCDC88B-202ENST00000356786 KRTAP24-1Q3LI83 254 aa12.71□□□□□ -0.37
CCDC88B-202ENST00000356786 Q96NJ1 140 aa12.71□□□□□ -0.37
CCDC88B-202ENST00000356786 SPANXA2-OT1Q8N9U9 137 aa12.71□□□□□ -0.38
CCDC88B-202ENST00000356786 CELSR3Q9NYQ7 3312 aa12.7□□□□□ -0.38
CCDC88B-202ENST00000356786 FAM104AQ969W3 186 aa12.7□□□□□ -0.38
CCDC88B-202ENST00000356786 CYSTM1Q9H1C7 97 aa12.69□□□□□ -0.38
CCDC88B-202ENST00000356786 IGLV5-48A0A075B6I7 105 aa12.68□□□□□ -0.38
CCDC88B-202ENST00000356786 TYMSOSQ8TAI1 123 aa12.67□□□□□ -0.38
CCDC88B-202ENST00000356786 DSCR10P59022 87 aa12.66□□□□□ -0.38
CCDC88B-202ENST00000356786 CR1P17927 2039 aa12.66□□□□□ -0.38
CCDC88B-202ENST00000356786 Q5XG85 94 aa12.65□□□□□ -0.38
CCDC88B-202ENST00000356786 TLX1NBP0CAT3 122 aa12.65□□□□□ -0.38
CCDC88B-202ENST00000356786 PLA2G2DQ9UNK4 145 aa12.65□□□□□ -0.38
CCDC88B-202ENST00000356786 KRTAP1-3Q8IUG1 177 aa12.65□□□□□ -0.38
CCDC88B-202ENST00000356786 Q1T7F1 81 aa12.64□□□□□ -0.39
CCDC88B-202ENST00000356786 CDC42SE1Q9NRR8 79 aa12.64□□□□□ -0.39
CCDC88B-202ENST00000356786 COL6A3P12111 3177 aa12.64□□□□□ -0.39
CCDC88B-202ENST00000356786 MAP1AP78559 2803 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-202ENST00000356786 FP248Q71RG6 208 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-202ENST00000356786 CHD6Q8TD26 2715 aa12.56□□□□□ -0.4
CCDC88B-202ENST00000356786 PRR26Q8N8Z3 221 aa12.56□□□□□ -0.4
CCDC88B-202ENST00000356786 ANAPC11Q9NYG5 84 aa12.54□□□□□ -0.4
CCDC88B-202ENST00000356786 ZNF861PO60384 105 aa12.54□□□□□ -0.4
CCDC88B-202ENST00000356786 CASC10Q5T4H9 136 aa12.53□□□□□ -0.4
CCDC88B-202ENST00000356786 KRTAP1-1Q07627 177 aa12.52□□□□□ -0.4
CCDC88B-202ENST00000356786 FRYQ5TBA9 3013 aa12.52□□□□□ -0.4
CCDC88B-202ENST00000356786 KRTAP10-3P60369 221 aa12.52□□□□□ -0.41
CCDC88B-202ENST00000356786 FAM229BQ4G0N7 80 aa12.51□□□□□ -0.41
CCDC88B-202ENST00000356786 C9orf163Q8N9P6 203 aa12.51□□□□□ -0.41
CCDC88B-202ENST00000356786 PLA2G1BP04054 148 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-202ENST00000356786 EYSQ5T1H1 3165 aa12.51□□□□□ -0.41
CCDC88B-202ENST00000356786 SPRR4Q96PI1 79 aa12.48□□□□□ -0.41
CCDC88B-202ENST00000356786 IGSF10Q6WRI0 2623 aa12.48□□□□□ -0.41
CCDC88B-202ENST00000356786 TNRC18O15417 2968 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-202ENST00000356786 SPTBN5Q9NRC6 3674 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-202ENST00000356786 REV3LO60673 3130 aa12.47□□□□□ -0.41
CCDC88B-202ENST00000356786 KRTAP10-11P60412 298 aa12.46□□□□□ -0.41
CCDC88B-202ENST00000356786 CRIPTQ9P021 101 aa12.45□□□□□ -0.42
CCDC88B-202ENST00000356786 RBM12B-AS1Q9P1G2 102 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms