RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 PRM2P04554 102 aa5.55□□□□□ -1.52
ATG4A-201ENST00000343524 KRTAP9-7A8MTY7 169 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 NDUFS5O43920 106 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 IGLV6-57P01721 117 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 C16orf74Q96GX8 76 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 KMT2CQ8NEZ4 4911 aaKnown RBP5.54□□□□□ -1.52
ATG4A-201ENST00000343524 TRAV22A0A0B4J277 110 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 TRGV4A0A0C4DH28 118 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 A0A1B0GUV1 79 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 C1orf64Q8NEQ6 169 aa5.54□□□□□ -1.52
ATG4A-201ENST00000343524 TRGV2A0A075B6R0 118 aa5.53□□□□□ -1.52
ATG4A-201ENST00000343524 PRR3P79522 188 aaKnown RBP5.53□□□□□ -1.52
ATG4A-201ENST00000343524 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.53□□□□□ -1.52
ATG4A-201ENST00000343524 HIGD2BQ4VC39 106 aa5.52□□□□□ -1.53
ATG4A-201ENST00000343524 SVEP1Q4LDE5 3571 aa5.52□□□□□ -1.53
ATG4A-201ENST00000343524 KRTAP4-11Q9BYQ6 195 aa5.52□□□□□ -1.53
ATG4A-201ENST00000343524 ESM1Q9NQ30 184 aa5.51□□□□□ -1.53
ATG4A-201ENST00000343524 IGHV4-61A0A0C4DH41 118 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 CMC4P56277 68 aaPredicted RBP5.5□□□□□ -1.53
ATG4A-201ENST00000343524 ELOF1P60002 83 aaKnown RBP5.5□□□□□ -1.53
ATG4A-201ENST00000343524 KIAA0087Q14695 138 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 LIMD2Q9BT23 127 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 NOP10Q9NPE3 64 aaKnown RBP5.5□□□□□ -1.53
ATG4A-201ENST00000343524 PSPHP1O15172 72 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 PSCAO43653 123 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 LINC01006Q8NI28 216 aa5.5□□□□□ -1.53
ATG4A-201ENST00000343524 ZCCHC13Q8WW36 166 aaKnown RBP5.5□□□□□ -1.53
ATG4A-201ENST00000343524 PRKDCP78527 4128 aaKnown RBP5.49□□□□□ -1.53
ATG4A-201ENST00000343524 LOC100131303A0A0U1RQF7 123 aa5.49□□□□□ -1.53
ATG4A-201ENST00000343524 ETDCA0A1B0GVM5 59 aa5.49□□□□□ -1.53
ATG4A-201ENST00000343524 ZNF73O43830 326 aaPredicted RBP5.49□□□□□ -1.53
ATG4A-201ENST00000343524 SYCNQ0VAF6 134 aa5.49□□□□□ -1.53
ATG4A-201ENST00000343524 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
ATG4A-201ENST00000343524 CELA1Q9UNI1 258 aa5.49□□□□□ -1.53
ATG4A-201ENST00000343524 A0A1W2PPR1 153 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 IGHV4-30-4P0DP06 118 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 SLURP1P55000 103 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 SMIM29Q86T20 159 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 LINC00588Q9Y4M8 146 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 BIRC6Q9NR09 4857 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 MSMBP08118 114 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 ATP11AUNQ6ZP68 121 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 RBM12B-AS1Q9P1G2 102 aa5.48□□□□□ -1.53
ATG4A-201ENST00000343524 A0A0J9YWU9 116 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 Q8N9L7 120 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 C4orf3Q8WVX3 66 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 FAM30AQ9NZY2 134 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 TENM1Q9UKZ4 2725 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 WNK1Q9H4A3 2382 aa5.47□□□□□ -1.53
ATG4A-201ENST00000343524 ODF3L2Q3SX64 289 aa5.46□□□□□ -1.53
ATG4A-201ENST00000343524 C10orf99Q6UWK7 81 aa5.46□□□□□ -1.53
ATG4A-201ENST00000343524 LINC00269Q8N2A0 174 aa5.46□□□□□ -1.53
ATG4A-201ENST00000343524 MAPK1IP1LQ8NDC0 245 aa5.46□□□□□ -1.53
ATG4A-201ENST00000343524 TRRAPQ9Y4A5 3859 aa5.46□□□□□ -1.54
ATG4A-201ENST00000343524 GVQW2A0A096LPI5 108 aaPredicted RBP5.46□□□□□ -1.54
ATG4A-201ENST00000343524 VPREB1P12018 145 aa5.46□□□□□ -1.54
ATG4A-201ENST00000343524 A8MUN3 132 aa5.45□□□□□ -1.54
ATG4A-201ENST00000343524 SPAG11BQ08648 103 aa5.45□□□□□ -1.54
ATG4A-201ENST00000343524 Q5VV11 94 aa5.45□□□□□ -1.54
ATG4A-201ENST00000343524 PHF5AQ7RTV0 110 aaKnown RBP5.45□□□□□ -1.54
ATG4A-201ENST00000343524 CCL19Q99731 98 aa5.45□□□□□ -1.54
ATG4A-201ENST00000343524 CR1P17927 2039 aa5.45□□□□□ -1.54
ATG4A-201ENST00000343524 LRCOL1A6NCL2 159 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 M0R378 163 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 SPANXA2-OT1Q8N9U9 137 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 LINC01356Q8N9X3 169 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 Q8NDZ9 215 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 CHCHD10Q8WYQ3 142 aaPredicted RBP5.44□□□□□ -1.54
ATG4A-201ENST00000343524 B4DSR2 109 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 MP68P56378 58 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 Q9BRP9 147 aa5.44□□□□□ -1.54
ATG4A-201ENST00000343524 H3BPC8 53 aa5.43□□□□□ -1.54
ATG4A-201ENST00000343524 CHKB-CPT1BH3BT56 60 aa5.43□□□□□ -1.54
ATG4A-201ENST00000343524 DEFB112Q30KQ8 113 aa5.43□□□□□ -1.54
ATG4A-201ENST00000343524 KRTAP4-5Q9BYR2 181 aa5.43□□□□□ -1.54
ATG4A-201ENST00000343524 ZNF702PQ9H963 129 aa5.43□□□□□ -1.54
ATG4A-201ENST00000343524 C9orf116Q5BN46 136 aaPredicted RBP5.42□□□□□ -1.54
ATG4A-201ENST00000343524 Q75L30 129 aa5.42□□□□□ -1.54
ATG4A-201ENST00000343524 LINC00612Q8N6U2 182 aa5.42□□□□□ -1.54
ATG4A-201ENST00000343524 B9D2Q9BPU9 175 aa5.42□□□□□ -1.54
ATG4A-201ENST00000343524 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.42□□□□□ -1.54
ATG4A-201ENST00000343524 REG3AQ06141 175 aa5.42□□□□□ -1.54
ATG4A-201ENST00000343524 CLPSL2Q6UWE3 100 aa5.42□□□□□ -1.54
ATG4A-201ENST00000343524 IGLV5-48A0A075B6I7 105 aa5.41□□□□□ -1.54
ATG4A-201ENST00000343524 C3orf84H3BNL1 204 aa5.41□□□□□ -1.54
ATG4A-201ENST00000343524 DEFB136Q30KP8 78 aa5.41□□□□□ -1.54
ATG4A-201ENST00000343524 C7orf65Q6ZTY9 151 aa5.41□□□□□ -1.54
ATG4A-201ENST00000343524 HCG22E2RYF7 251 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 GYPEP15421 78 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 LCE5AQ5TCM9 118 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 LINC00208Q96KT6 92 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 C19orf73Q9NVV2 129 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 KLK12Q9UKR0 248 aa5.4□□□□□ -1.54
ATG4A-201ENST00000343524 C16orf90A8MZG2 172 aa5.4□□□□□ -1.55
ATG4A-201ENST00000343524 KPRPQ5T749 579 aaPredicted RBP5.4□□□□□ -1.55
ATG4A-201ENST00000343524 UNQ6190/PRO20217Q6UXQ8 127 aa5.4□□□□□ -1.55
ATG4A-201ENST00000343524 PRR15LQ9BU68 103 aa5.4□□□□□ -1.55
ATG4A-201ENST00000343524 KCNQ1DNQ9H478 68 aa5.4□□□□□ -1.55
ATG4A-201ENST00000343524 VWFP04275 2813 aa5.4□□□□□ -1.55
ATG4A-201ENST00000343524 ANGP03950 147 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms