RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 Q6ZR54 194 aa4.08□□□□□ -1.76
CDC42BPA-201ENST00000334218 PRR34Q9NV39 138 aa4.08□□□□□ -1.76
CDC42BPA-201ENST00000334218 A0A096LNJ9 63 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 CHD8Q9HCK8 2581 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 PP632Q6XCG6 107 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 ODF3BA8MYP8 253 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 K7EQZ3 153 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 GVQW2A0A096LPI5 108 aaPredicted RBP4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 LMO4P61968 165 aa4.07□□□□□ -1.76
CDC42BPA-201ENST00000334218 A0A1B0GVX0 72 aa4.06□□□□□ -1.76
CDC42BPA-201ENST00000334218 HRES1P13985 223 aa4.06□□□□□ -1.76
CDC42BPA-201ENST00000334218 PRRC2CQ9Y520 2896 aaKnown RBP4.06□□□□□ -1.76
CDC42BPA-201ENST00000334218 KRTAP25-1Q3LHN0 102 aa4.05□□□□□ -1.76
CDC42BPA-201ENST00000334218 COL4A3Q01955 1670 aa4.05□□□□□ -1.76
CDC42BPA-201ENST00000334218 FAM229BQ4G0N7 80 aa4.04□□□□□ -1.76
CDC42BPA-201ENST00000334218 UNQ6190/PRO20217Q6UXQ8 127 aa4.04□□□□□ -1.76
CDC42BPA-201ENST00000334218 CENPEQ02224 2701 aa4.04□□□□□ -1.76
CDC42BPA-201ENST00000334218 A6NN06 94 aa4.04□□□□□ -1.76
CDC42BPA-201ENST00000334218 FAM218AQ96MZ4 157 aa4.03□□□□□ -1.76
CDC42BPA-201ENST00000334218 USP9XQ93008 2570 aaPredicted RBP4.03□□□□□ -1.76
CDC42BPA-201ENST00000334218 HECTD1Q9ULT8 2610 aa4.02□□□□□ -1.77
CDC42BPA-201ENST00000334218 DEFB136Q30KP8 78 aa4.02□□□□□ -1.77
CDC42BPA-201ENST00000334218 ZNF295-AS1Q8N0V1 137 aa4.02□□□□□ -1.77
CDC42BPA-201ENST00000334218 C9orf163Q8N9P6 203 aa4.02□□□□□ -1.77
CDC42BPA-201ENST00000334218 PIEZO2Q9H5I5 2752 aa4.01□□□□□ -1.77
CDC42BPA-201ENST00000334218 FASNP49327 2511 aaKnown RBP4.01□□□□□ -1.77
CDC42BPA-201ENST00000334218 CASC10Q5T4H9 136 aa4.01□□□□□ -1.77
CDC42BPA-201ENST00000334218 C15orf56Q8N910 161 aa4.01□□□□□ -1.77
CDC42BPA-201ENST00000334218 RPL37P61927 97 aaKnown RBP4□□□□□ -1.77
CDC42BPA-201ENST00000334218 CHD6Q8TD26 2715 aa4□□□□□ -1.77
CDC42BPA-201ENST00000334218 SPATA8Q6RVD6 105 aa4□□□□□ -1.77
CDC42BPA-201ENST00000334218 RTL8CO15255 209 aa3.99□□□□□ -1.77
CDC42BPA-201ENST00000334218 PLAC4Q8WY50 150 aa3.99□□□□□ -1.77
CDC42BPA-201ENST00000334218 ZNF580Q9UK33 172 aa3.99□□□□□ -1.77
CDC42BPA-201ENST00000334218 DEFB135Q30KP9 77 aa3.99□□□□□ -1.77
CDC42BPA-201ENST00000334218 C20orf166-AS1Q96NR2 134 aa3.99□□□□□ -1.77
CDC42BPA-201ENST00000334218 WISP2O76076 250 aa3.98□□□□□ -1.77
CDC42BPA-201ENST00000334218 C19orf73Q9NVV2 129 aa3.97□□□□□ -1.77
CDC42BPA-201ENST00000334218 PSORS1C2Q9UIG4 136 aa3.97□□□□□ -1.77
CDC42BPA-201ENST00000334218 C16orf95Q9H693 158 aa3.96□□□□□ -1.77
CDC42BPA-201ENST00000334218 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.95□□□□□ -1.78
CDC42BPA-201ENST00000334218 H3BNG1 76 aa3.95□□□□□ -1.78
CDC42BPA-201ENST00000334218 SPRR4Q96PI1 79 aa3.95□□□□□ -1.78
CDC42BPA-201ENST00000334218 ST20-AS1Q8NBB2 130 aa3.95□□□□□ -1.78
CDC42BPA-201ENST00000334218 KRTAP23-1A1A580 65 aa3.94□□□□□ -1.78
CDC42BPA-201ENST00000334218 LINC01556Q5JQF7 62 aa3.94□□□□□ -1.78
CDC42BPA-201ENST00000334218 LITAFQ99732 161 aa3.94□□□□□ -1.78
CDC42BPA-201ENST00000334218 IGLV5-48A0A075B6I7 105 aa3.94□□□□□ -1.78
CDC42BPA-201ENST00000334218 H1FX-AS1Q4G0G2 97 aa3.94□□□□□ -1.78
CDC42BPA-201ENST00000334218 IGLV1-51P01701 117 aa3.93□□□□□ -1.78
CDC42BPA-201ENST00000334218 TYMSOSQ8TAI1 123 aa3.93□□□□□ -1.78
CDC42BPA-201ENST00000334218 Q96NJ1 140 aa3.93□□□□□ -1.78
CDC42BPA-201ENST00000334218 KRTAP10-9P60411 292 aa3.93□□□□□ -1.78
CDC42BPA-201ENST00000334218 A8MTW9 85 aa3.92□□□□□ -1.78
CDC42BPA-201ENST00000334218 A0A0D9SG42 100 aa3.92□□□□□ -1.78
CDC42BPA-201ENST00000334218 C1orf229Q6ZS94 237 aaPredicted RBP3.91□□□□□ -1.78
CDC42BPA-201ENST00000334218 GCN1Q92616 2671 aaKnown RBP3.91□□□□□ -1.78
CDC42BPA-201ENST00000334218 ANAPC11Q9NYG5 84 aa3.91□□□□□ -1.78
CDC42BPA-201ENST00000334218 GAS8-AS1O95177 125 aa3.9□□□□□ -1.78
CDC42BPA-201ENST00000334218 NOTCH1P46531 2555 aa3.9□□□□□ -1.79
CDC42BPA-201ENST00000334218 LINC00315P59091 139 aa3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 SRCAPQ6ZRS2 3230 aa3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 PROK1P58294 105 aa3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 IGFL1Q6UW32 110 aa3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 COL4A2P08572 1712 aa3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 GOLGB1Q14789 3259 aaKnown RBP3.89□□□□□ -1.79
CDC42BPA-201ENST00000334218 SPACA4Q8TDM5 124 aa3.88□□□□□ -1.79
CDC42BPA-201ENST00000334218 A0A1W2PNN7 141 aa3.88□□□□□ -1.79
CDC42BPA-201ENST00000334218 ZNF575Q86XF7 245 aa3.87□□□□□ -1.79
CDC42BPA-201ENST00000334218 A0A1W2PPR1 153 aa3.87□□□□□ -1.79
CDC42BPA-201ENST00000334218 BRWD1-AS2P59051 145 aa3.87□□□□□ -1.79
CDC42BPA-201ENST00000334218 SMR3AQ99954 134 aa3.86□□□□□ -1.79
CDC42BPA-201ENST00000334218 Q8N377 158 aa3.85□□□□□ -1.79
CDC42BPA-201ENST00000334218 CNBPP62633 177 aaKnown RBP3.85□□□□□ -1.79
CDC42BPA-201ENST00000334218 OXTP01178 125 aa3.84□□□□□ -1.79
CDC42BPA-201ENST00000334218 CRIP3Q6Q6R5 217 aa3.84□□□□□ -1.79
CDC42BPA-201ENST00000334218 A0A0G2JQZ4 141 aa3.84□□□□□ -1.79
CDC42BPA-201ENST00000334218 FAM168BA1KXE4 195 aa3.84□□□□□ -1.79
CDC42BPA-201ENST00000334218 USP24Q9UPU5 2620 aa3.84□□□□□ -1.8
CDC42BPA-201ENST00000334218 ZCCHC13Q8WW36 166 aaKnown RBP3.83□□□□□ -1.8
CDC42BPA-201ENST00000334218 ZNF292O60281 2723 aa3.82□□□□□ -1.8
CDC42BPA-201ENST00000334218 ITPR3Q14573 2671 aa3.81□□□□□ -1.8
CDC42BPA-201ENST00000334218 KRTAP24-1Q3LI83 254 aa3.81□□□□□ -1.8
CDC42BPA-201ENST00000334218 ZNF861PO60384 105 aa3.81□□□□□ -1.8
CDC42BPA-201ENST00000334218 ADM2Q7Z4H4 148 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 WWC2-AS2Q96NR7 200 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 DEFB1P60022 68 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 A8MUU9 505 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 STAB1Q9NY15 2570 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 A0A1W2PNM2 257 aa3.8□□□□□ -1.8
CDC42BPA-201ENST00000334218 DSCR10P59022 87 aa3.79□□□□□ -1.8
CDC42BPA-201ENST00000334218 DEFB4AO15263 64 aa3.79□□□□□ -1.8
CDC42BPA-201ENST00000334218 NBEAL1Q6ZS30 2694 aa3.79□□□□□ -1.8
CDC42BPA-201ENST00000334218 BPTFQ12830 3046 aa3.79□□□□□ -1.8
CDC42BPA-201ENST00000334218 UTRNP46939 3433 aa3.78□□□□□ -1.8
CDC42BPA-201ENST00000334218 BAHCC1Q9P281 2608 aa3.78□□□□□ -1.8
CDC42BPA-201ENST00000334218 M0QZ58 72 aa3.78□□□□□ -1.8
CDC42BPA-201ENST00000334218 FLNCQ14315 2725 aa3.77□□□□□ -1.81
CDC42BPA-201ENST00000334218 UNC79Q9P2D8 2635 aa3.77□□□□□ -1.81
CDC42BPA-201ENST00000334218 S4R3F8 94 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms